Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

11047877 .. 11050380

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15850.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAACTTTACTGGTCCATCTGTTGGTTCTGGTGGTAGAACTGCTAGGAGGGCGTTTGAGTTTGGAAGAACCTATGTAGTCAGACCTAAAGGCAAACACCAGGCCACCGTAGTTTGGCTACATGGCCTCGGCGATAATGGTTCAAGCTGGTCCCAGCTCTTGGAATCCCTCCCTCTTCCAAATATTAAGTGGATCTGTCCAACTGCTCCTACTCAGCCAATTTCAGTTCTTGGTGGCTTTGCTTCCACTGCTTGGTTTGATGTTGGAGAACTTTCAGAAGATGCTCCGGATGATGTAGAGGGTTTGGATGCTTCTGCAACACATGTTGCAAAATTGTTATCGACAGAGCCTGATGACATTAAACTTGGCATTGGAGGTTTTAGTATGGGTGCAGCTACTGCACTATACTCCGCCACCTGCTTCTCTACAAGAAAATATGGGAATGGTAATCAATACCCATGCAATCTGAGTGCCGTTGTTGGACTAAGCGGATGGCTTCCATGTTCCAAGACCTTGAGTAAGAAGTTAGAAGAAGTAGATGAAGCTGCAAGGCGTGCTGCCTCCATTCCGCTTTTGTTATGTCATGGGAAAAGTGATGATGTGGTTCCTTACAAGTTTGGTGAGAAATCGTCGCAGACCTTAAGTTCAACTGGCTTTCAGAATGTGACATTCAAATCCTACAACAGGCTTGGTCATTATACAATTCCGGAAGAGATGGACGAGGTTTGTGCTTGGCTAAGATCAAAGTTGGGGCTTGACGGGACTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

258

Amino Acids

27.56

Weight (kDa)

6.21

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	425
AccB7I	CCANNNNNTGG	3 cut(s)	23, 160, 252
AccIII	TCCGGA	2 cut(s)	286, 706
AciI	CCGC	3 cut(s)	411, 489, 569
AclWI	GGATC	1 cut(s)	200
AfiI	CCNNNNNNNGG	5 cut(s)	23, 114, 160, 252, 684
AflII	CTTAAG	1 cut(s)	640
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	144, 648, 673
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	4 cut(s)	147, 157, 395, 545
AluI	AGCT	4 cut(s)	147, 157, 395, 545
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	2 cut(s)	350, 398
Aor13HI	TCCGGA	2 cut(s)	286, 706
AoxI	GGCC	2 cut(s)	102, 124
ApeKI	GCWGC	3 cut(s)	392, 545, 557
AspS9I	GGNCC	2 cut(s)	14, 150
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	14, 150
BbvI	GCAGC	3 cut(s)	404, 532, 544
BccI	CCATC	3 cut(s)	25, 486, 709
BceAI	ACGGC	1 cut(s)	458
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	640
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	3 cut(s)	393, 546, 558
BlsI	GCNGC	3 cut(s)	394, 547, 559
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	2 cut(s)	14, 150
BmgT120I	GGNCC	2 cut(s)	14, 150
BmiI	GGNNCC	2 cut(s)	152, 606
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	271, 298
BpuEI	CTTGAG	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	2 cut(s)	286, 706
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 114, 160, 252, 684
Bse1I	ACTGG	2 cut(s)	16, 655
BseAI	TCCGGA	2 cut(s)	286, 706
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	295, 313, 497
BseLI	CCNNNNNNNGG	5 cut(s)	23, 114, 160, 252, 684
BseMII	CTCAG	2 cut(s)	227, 458
BseNI	ACTGG	2 cut(s)	16, 655
BseXI	GCAGC	3 cut(s)	404, 532, 544
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	384, 411
BshFI	GGCC	2 cut(s)	104, 126
BsiSI	CCGG	2 cut(s)	287, 707
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	5 cut(s)	23, 114, 160, 252, 684
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	104, 126
Bsp13I	TCCGGA	2 cut(s)	286, 706
Bsp143I	GATC	2 cut(s)	192, 740
BspACI	CCGC	3 cut(s)	411, 489, 569
BspANI	GGCC	2 cut(s)	104, 126
BspCNI	CTCAG	2 cut(s)	226, 459
BspEI	TCCGGA	2 cut(s)	286, 706
BspLI	GGNNCC	2 cut(s)	152, 606
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	16, 655
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	192, 740
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	180, 705
BstAFI	CTTAAG	1 cut(s)	640
BstAPI	GCANNNNNTGC	2 cut(s)	398, 554
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	4 cut(s)	213, 467, 485, 737
BstENI	CCTNNNNNAGG	1 cut(s)	682
BstF5I	GGATG	3 cut(s)	295, 313, 497
BstKTI	GATC	2 cut(s)	195, 743
BstMBI	GATC	2 cut(s)	192, 740
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 248, 398, 554
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	404, 532, 544
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	104, 126
BtsCI	GGATG	3 cut(s)	295, 313, 497
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	555
CaiI	CAGNNNCTG	2 cut(s)	350, 398
Cfr13I	GGNCC	2 cut(s)	14, 150
CviAII	CATG	5 cut(s)	122, 323, 459, 501, 584
DdeI	CTNAG	4 cut(s)	213, 467, 485, 737
DpnI	GATC	2 cut(s)	194, 742
DpnII	GATC	2 cut(s)	192, 740
Eam1104I	CTCTTC	2 cut(s)	180, 705
EarI	CTCTTC	2 cut(s)	180, 705
EciI	GGCGGA	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	14, 150
EcoNI	CCTNNNNNAGG	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	125, 326, 462, 504, 587
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	5 cut(s)	121, 322, 458, 500, 583
Fnu4HI	GCNGC	3 cut(s)	393, 546, 558
FokI	GGATG	3 cut(s)	302, 320, 504
Fsp4HI	GCNGC	3 cut(s)	393, 546, 558
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	3 cut(s)	393, 546, 558
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	104, 126
HapII	CCGG	2 cut(s)	287, 707
Hin1II	CATG	5 cut(s)	125, 326, 462, 504, 587
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	287, 707
HphI	GGTGA	1 cut(s)	632
Hpy188I	TCNGA	4 cut(s)	83, 277, 468, 660
Hpy188III	TCNNGA	2 cut(s)	287, 707
Hpy99I	CGWCG	1 cut(s)	634
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	317, 329, 392, 401, 462, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 248, 398, 554
HpyF3I	CTNAG	4 cut(s)	213, 467, 485, 737
Hsp92II	CATG	5 cut(s)	125, 326, 462, 504, 587
Kpn2I	TCCGGA	2 cut(s)	286, 706
Kzo9I	GATC	2 cut(s)	192, 740
LmnI	GCTCC	2 cut(s)	211, 289
Lsp1109I	GCAGC	3 cut(s)	404, 532, 544
LweI	GCATC	2 cut(s)	271, 298
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	2 cut(s)	194, 742
MboI	GATC	2 cut(s)	192, 740
MboII	GAAGA	6 cut(s)	78, 167, 290, 542, 722, 759
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	3 cut(s)	219, 332, 702
MmeI	TCCRAC	3 cut(s)	224, 244, 460
MnlI	CCTC	8 cut(s)	42, 137, 179, 183, 292, 368, 571, 715
MroI	TCCGGA	2 cut(s)	286, 706
MseI	TTAA	3 cut(s)	186, 360, 641
MspCI	CTTAAG	1 cut(s)	640
MspI	CCGG	2 cut(s)	287, 707
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	50, 248, 398, 554
NdeII	GATC	2 cut(s)	192, 740
NlaIII	CATG	5 cut(s)	125, 326, 462, 504, 587
NlaIV	GGNNCC	2 cut(s)	152, 606
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	664
NspI	RCATGY	1 cut(s)	326
PaqCI	CACCTGC	1 cut(s)	425
PciI	ACATGT	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	3 cut(s)	23, 160, 252
PkrI	GCNGC	3 cut(s)	394, 547, 559
PscI	ACATGT	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	152, 606
PspPI	GGNCC	2 cut(s)	14, 150
PstNI	CAGNNNCTG	2 cut(s)	350, 398
PsuI	RGATCY	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	186, 360, 641
SatI	GCNGC	3 cut(s)	393, 546, 558
Sau3AI	GATC	2 cut(s)	192, 740
Sau96I	GGNCC	2 cut(s)	14, 150
ScrFI	CCNGG	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	271, 298
SinI	GGWCC	2 cut(s)	14, 150
SmlI	CTYRAG	2 cut(s)	514, 640
SmoI	CTYRAG	2 cut(s)	514, 640
Sse9I	AATT	3 cut(s)	219, 332, 702
SsiI	CCGC	3 cut(s)	411, 489, 569
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	219, 332, 702
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	3 cut(s)	186, 360, 641
Tru9I	TTAA	3 cut(s)	186, 360, 641
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	3 cut(s)	392, 545, 557
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	3 cut(s)	17, 555, 759
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	3 cut(s)	23, 160, 252
Vha464I	CTTAAG	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	14, 150
XagI	CCTNNNNNAGG	1 cut(s)	682
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.