Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Forward (+)

58941736 .. 58945493

Gene Structure 3758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG328700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATCGGATGCACAATGAGTTACTTAAGCCTGAAGGACAATCCTCATGCTTAAAAGGGGGAAAATCATCTCTTGTATCATTTGCAAAAGAAGATGAATCGGAGATGGTTGGCCCAAAGAATACATCGATCTGCAGTGGTAGAACTGTTAGAAGGGCTTTTGAGTTTGGAAGAACCTATGTAGTCCGACCTAAAGCAAACACCAGGCCACCCTGGTTCCAGCTCTTGGAAACTCTCCCCCTTCCTAATATTAAATGGATTTGTCCAACCGCTCCTATTGAACCAATTTCAGGTTTTGGTGGTTTTCCTTCCATTGCTTGTGATGCTGTGGTTCCTTATAAGTTTGGTGAGAAATCTTCACGAGCTGTGACTGCAACTGGCTTTCAGGACGTGACCTTCAAATCCTATAATGGGTATGTGGTTCCTTATTTTGTGTTTAGGTTCTTGCAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

151

Amino Acids

16.82

Weight (kDa)

9.27

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	272
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	54
AfiI	CCNNNNNNNGG	3 cut(s)	226, 290, 411
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	281, 400
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	203, 212
AluBI	AGCT	2 cut(s)	223, 365
AluI	AGCT	2 cut(s)	223, 365
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	112, 206
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	359
BauI	CACGAG	1 cut(s)	360
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	205, 214
BfmI	CTRYAG	1 cut(s)	133
BfrI	CTTAAG	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	205, 214
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	3 cut(s)	218, 333, 423
BmrFI	CCNGG	2 cut(s)	205, 214
BmsI	GCATC	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 290, 411
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	205, 214
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	226, 290, 411
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	114, 208
BshVI	ATCGAT	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	226, 290, 411
BsnI	GGCC	2 cut(s)	114, 208
Bsp143I	GATC	2 cut(s)	4, 129
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	114, 208
BspDI	ATCGAT	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	218, 333, 423
BspMAI	CTGCAG	1 cut(s)	137
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	4, 129
BssSI	CACGAG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	205, 214
Bst4CI	ACNGT	1 cut(s)	148
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	2 cut(s)	7, 132
BstMBI	GATC	2 cut(s)	4, 129
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 371
BstNI	CCWGG	2 cut(s)	205, 214
BstSCI	CCNGG	2 cut(s)	203, 212
BstSFI	CTRYAG	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	114, 208
BsuTUI	ATCGAT	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	128
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	7 cut(s)	31, 114, 158, 208, 223, 365, 381
CviKI_1	RGCY	7 cut(s)	31, 114, 158, 208, 223, 365, 381
DpnI	GATC	2 cut(s)	6, 131
DpnII	GATC	2 cut(s)	4, 129
Eco57I	CTGAAG	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	203, 212
FaeI	CATG	1 cut(s)	51
FaiI	YATR	6 cut(s)	49, 180, 339, 408, 417, 454
FatI	CATG	1 cut(s)	47
FokI	GGATG	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	114, 208
Hin1II	CATG	1 cut(s)	51
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	9, 103, 188
Hpy188III	TCNNGA	2 cut(s)	360, 386
HpyAV	CCTTC	5 cut(s)	29, 147, 251, 318, 406
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	5 cut(s)	13, 86, 135, 374, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 371
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	4, 129
LmnI	GCTCC	1 cut(s)	277
LweI	GCATC	1 cut(s)	313
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	3 cut(s)	21, 367, 391
MalI	GATC	2 cut(s)	6, 131
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	2 cut(s)	4, 129
MboII	GAAGA	3 cut(s)	104, 183, 348
MluCI	AATT	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	211, 290
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	3 cut(s)	27, 53, 252
MspCI	CTTAAG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	205, 214
MvaI	CCWGG	2 cut(s)	205, 214
MwoI	GCNNNNNNNGC	2 cut(s)	323, 371
NdeII	GATC	2 cut(s)	4, 129
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	3 cut(s)	218, 333, 423
NmuCI	GTSAC	2 cut(s)	367, 391
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	203, 212
PspGI	CCWGG	2 cut(s)	203, 212
PspN4I	GGNNCC	3 cut(s)	218, 333, 423
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	27, 53, 252
Sau3AI	GATC	2 cut(s)	4, 129
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	205, 214
SetI	ASST	8 cut(s)	179, 193, 225, 295, 367, 393, 398, 443
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	270
SspI	AATATT	1 cut(s)	250
StyD4I	CCNGG	2 cut(s)	203, 212
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	128
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	3 cut(s)	27, 53, 252
Tru9I	TTAA	3 cut(s)	27, 53, 252
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	367, 391
Tsp45I	GTSAC	2 cut(s)	367, 391
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.