Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Forward (+)

7330520 .. 7333749

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10930.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGCTACAATAGCTCCAACGCCGCTTCTGGTAGTAGAACTGGTAGCAGGGCGTTTGAGTTTGGAAGGACCCATGTAGTGAGGCCTAAAGGGAGACACCAAGCAACTATAGTTTGGCTACATGGCCTTGGTGATAAGGGTTCAAGTTGGTCCCAGCTCTTGGAAAGCCTTCCTCTTCCTAATATTAAGTGGATTTGCCCTACTGCTCCTTCTCGACCTGTAGCTCTATTTGGCGGATTCCCTTGCACTGCTTGGTTTGACATGGGAGAAATTTCAGAAGATGCTCCTGATGATATGGAGGGGTTAGATGCCTCAGCAGCGCATGTCGCAAATCTTTTGTCAACAGAGCCTGCTGATATAAAACTTGGTGTTGGTGGCTTCAGTATGGGTGCTGCAACTGCCCTCTACTCAGCCACGTGCCGTGTTTTAGGGCAATATGGGAATGGAAACCCGTACCCAGTTAACCTAAGTGCAATTGTTGGTTTAAGTGGCTGGCTTCCGTGTTCAAGAACTTTGACGAACCGGATGGAAAGGTCACACGAGGCTGCAAGGCATGCAGCATTCTTGCCCATTTTGTTATGTCATGGCTTAGGTGATGATGTGGTCGCATATGAACATGGAGAGAAATCTGCGCAGACCTTGAATTCAGCAGGATTTAGAAATCTCATGTTTAGAAAATACAACGGGCTGGGTCACTACACAATCCCTGAAGAGACCGATGACGTTTGTACTTGGCTAACTTCTAGTCTGGGCCTTGAGGGATCCCGATCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

259

Amino Acids

27.74

Weight (kDa)

6.12

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	633
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	2 cut(s)	24, 234
AclWI	GGATC	2 cut(s)	756, 769
AcsI	RAATTY	2 cut(s)	270, 643
AcuI	CTGAAG	2 cut(s)	364, 729
AcvI	CACGTG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	455, 730
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	144, 507, 643
AluBI	AGCT	4 cut(s)	6, 15, 157, 224
AluI	AGCT	4 cut(s)	6, 15, 157, 224
Alw26I	GTCTC	2 cut(s)	88, 707
AlwI	GGATC	2 cut(s)	756, 769
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	83, 124, 751
ApeKI	GCWGC	4 cut(s)	317, 392, 545, 557
ApoI	RAATTY	2 cut(s)	270, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	322, 634
AspS9I	GGNCC	3 cut(s)	69, 150, 751
AsuHPI	GGTGA	2 cut(s)	143, 605
AvaII	GGWCC	2 cut(s)	69, 150
BamHI	GGATCC	1 cut(s)	761
BauI	CACGAG	1 cut(s)	539
BbrPI	CACGTG	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	313
BbvI	GCAGC	4 cut(s)	329, 379, 532, 569
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	405
BcoDI	GTCTC	2 cut(s)	88, 707
BfaI	CTAG	2 cut(s)	744, 775
BfmI	CTRYAG	2 cut(s)	108, 219
BisI	GCNGC	5 cut(s)	24, 318, 393, 546, 558
BlsI	GCNGC	5 cut(s)	25, 319, 394, 547, 559
Bme18I	GGWCC	2 cut(s)	69, 150
BmgT120I	GGNCC	3 cut(s)	69, 150, 751
BmiI	GGNNCC	3 cut(s)	71, 152, 763
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	2 cut(s)	271, 298
BmuI	ACTGGG	1 cut(s)	452
Bpu10I	CCTNAGC	2 cut(s)	313, 589
BpuEI	CTTGAG	1 cut(s)	776
BsaAI	YACGTR	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	766
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	46, 458
Bse8I	GATNNNNATC	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	531
BseJI	GATNNNNATC	1 cut(s)	766
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	327, 423
BseNI	ACTGG	2 cut(s)	46, 458
BseXI	GCAGC	4 cut(s)	329, 379, 532, 569
BseYI	CCCAGC	2 cut(s)	153, 688
BshFI	GGCC	3 cut(s)	85, 126, 753
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	88, 707
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	85, 126, 753
Bso31I	GGTCTC	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	761, 767
BspACI	CCGC	2 cut(s)	24, 234
BspANI	GGCC	3 cut(s)	85, 126, 753
BspCNI	CTCAG	2 cut(s)	326, 422
BspLI	GGNNCC	3 cut(s)	71, 152, 763
BspPI	GGATC	2 cut(s)	756, 769
BspTNI	GGTCTC	1 cut(s)	707
BsrI	ACTGG	2 cut(s)	46, 458
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	761, 767
BssSI	CACGAG	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	539
Bst6I	CTCTTC	2 cut(s)	180, 705
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	417
BstC8I	GCNNGC	3 cut(s)	351, 494, 555
BstDEI	CTNAG	4 cut(s)	313, 409, 467, 589
BstF5I	GGATG	1 cut(s)	531
BstHHI	GCGC	2 cut(s)	322, 634
BstKTI	GATC	2 cut(s)	764, 770
BstMAI	GTCTC	2 cut(s)	88, 707
BstMBI	GATC	2 cut(s)	761, 767
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 317, 326, 398, 554
BstNSI	RCATGY	2 cut(s)	326, 557
BstSFI	CTRYAG	2 cut(s)	108, 219
BstV1I	GCAGC	4 cut(s)	329, 379, 532, 569
BstX2I	RGATCY	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	761
BsuRI	GGCC	3 cut(s)	85, 126, 753
BtsCI	GGATG	1 cut(s)	531
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	351, 494, 555
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	2 cut(s)	322, 634
Cfr13I	GGNCC	3 cut(s)	69, 150, 751
Csp6I	GTAC	2 cut(s)	454, 729
CviAII	CATG	8 cut(s)	74, 122, 262, 323, 554, 584, 617, 667
CviQI	GTAC	2 cut(s)	454, 729
DdeI	CTNAG	4 cut(s)	313, 409, 467, 589
DpnI	GATC	2 cut(s)	763, 769
DpnII	GATC	2 cut(s)	761, 767
Eam1104I	CTCTTC	2 cut(s)	180, 705
EarI	CTCTTC	2 cut(s)	180, 705
EciI	GGCGGA	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	69, 150
Eco57I	CTGAAG	2 cut(s)	364, 729
Eco72I	CACGTG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	8 cut(s)	77, 125, 265, 326, 557, 587, 620, 670
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	8 cut(s)	73, 121, 261, 322, 553, 583, 616, 666
FauNDI	CATATG	1 cut(s)	610
Fnu4HI	GCNGC	5 cut(s)	24, 318, 393, 546, 558
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	5 cut(s)	24, 318, 393, 546, 558
FspBI	CTAG	2 cut(s)	744, 775
FspI	TGCGCA	1 cut(s)	633
GlaI	GCGC	2 cut(s)	321, 633
GluI	GCNGC	5 cut(s)	24, 318, 393, 546, 558
GsaI	CCCAGC	2 cut(s)	157, 692
HaeIII	GGCC	3 cut(s)	85, 126, 753
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	2 cut(s)	322, 634
Hin1II	CATG	8 cut(s)	77, 125, 265, 326, 557, 587, 620, 670
Hin6I	GCGC	2 cut(s)	320, 632
HinP1I	GCGC	2 cut(s)	320, 632
HincII	GTYRAC	2 cut(s)	342, 463
HindII	GTYRAC	2 cut(s)	342, 463
HinfI	GANTC	1 cut(s)	237
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	2 cut(s)	143, 605
Hpy166II	GTNNAC	2 cut(s)	342, 463
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	4 cut(s)	213, 287, 507, 765
Hpy8I	GTNNAC	2 cut(s)	342, 463
HpyAV	CCTTC	3 cut(s)	60, 179, 219
HpyCH4IV	ACGT	2 cut(s)	416, 723
HpyCH4V	TGCA	5 cut(s)	246, 395, 473, 548, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 317, 326, 398, 554
HpyF3I	CTNAG	4 cut(s)	313, 409, 467, 589
HpySE526I	ACGT	2 cut(s)	416, 723
Hsp92II	CATG	8 cut(s)	77, 125, 265, 326, 557, 587, 620, 670
HspAI	GCGC	2 cut(s)	320, 632
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	761, 767
LmnI	GCTCC	3 cut(s)	20, 211, 289
Lsp1109I	GCAGC	4 cut(s)	329, 379, 532, 569
LweI	GCATC	2 cut(s)	271, 298
MaeI	CTAG	2 cut(s)	744, 775
MaeII	ACGT	2 cut(s)	416, 723
MaeIII	GTNAC	2 cut(s)	534, 692
MalI	GATC	2 cut(s)	763, 769
MboI	GATC	2 cut(s)	761, 767
MboII	GAAGA	3 cut(s)	167, 290, 722
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	761
MluCI	AATT	3 cut(s)	270, 474, 643
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	75, 183, 292, 322, 413, 535, 751
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	186, 462, 485
MspI	CCGG	1 cut(s)	523
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	560
MwoI	GCNNNNNNNGC	5 cut(s)	12, 317, 326, 398, 554
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	2 cut(s)	761, 767
NlaIII	CATG	8 cut(s)	77, 125, 265, 326, 557, 587, 620, 670
NlaIV	GGNNCC	3 cut(s)	71, 152, 763
NmuCI	GTSAC	2 cut(s)	534, 692
NsbI	TGCGCA	1 cut(s)	633
NspI	RCATGY	2 cut(s)	326, 557
PaeI	GCATGC	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	85
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	25, 319, 394, 547, 559
PmaCI	CACGTG	1 cut(s)	417
PmlI	CACGTG	1 cut(s)	417
Ppu21I	YACGTR	1 cut(s)	417
PpuMI	RGGWCCY	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	69
PspCI	CACGTG	1 cut(s)	417
PspFI	CCCAGC	2 cut(s)	153, 688
PspN4I	GGNNCC	3 cut(s)	71, 152, 763
PspPI	GGNCC	3 cut(s)	69, 150, 751
PspPPI	RGGWCCY	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	761
RsaI	GTAC	2 cut(s)	455, 730
RsaNI	GTAC	2 cut(s)	454, 729
SaqAI	TTAA	3 cut(s)	186, 462, 485
SatI	GCNGC	5 cut(s)	24, 318, 393, 546, 558
Sau3AI	GATC	2 cut(s)	761, 767
Sau96I	GGNCC	3 cut(s)	69, 150, 751
SfaNI	GCATC	2 cut(s)	271, 298
SfcI	CTRYAG	2 cut(s)	108, 219
SinI	GGWCC	2 cut(s)	69, 150
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	3 cut(s)	270, 474, 643
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	24, 234
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	744, 775
StuI	AGGCCT	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	127
TaiI	ACGT	2 cut(s)	419, 726
TaqI	TCGA	1 cut(s)	214
TaqII	GACCGA	1 cut(s)	731
TasI	AATT	3 cut(s)	270, 474, 643
TatI	WGTACW	1 cut(s)	728
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	3 cut(s)	186, 462, 485
Tru9I	TTAA	3 cut(s)	186, 462, 485
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	534, 692
TseI	GCWGC	4 cut(s)	317, 392, 545, 557
Tsp45I	GTSAC	2 cut(s)	534, 692
TspDTI	ATGAA	1 cut(s)	627
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	69, 150
XapI	RAATTY	2 cut(s)	270, 643
XceI	RCATGY	2 cut(s)	326, 557
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	744, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.