Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Forward (+)

10571637 .. 10575012

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGTATAAATAGATATGACCAACATTGGCTTTTCTCCATTGCAGGAAGTCAGCATAGGTTTGCGCATTTCGTGTGTATTTTGGGGGCGAGGATGAGCTACAATAGCTCCAACGCTGGTTCTGGTAGTAGAACTGCTAGCAGGGCGTTTGAGTTCGGAAGGACCCATGTGGTCAGGCCTAAAGGGAGACATCAAGCAACAATAGTTTGGCTGCATGGCCTTGGTGATAAGGGCTCAAGCTGGTCCCAGCTCTTGGAAAGCCTTCCTCTTCCTAATATTAAGTGGATTTGCCCTACTGCTCCTTCTCGACCTGTGGCTCTATTTGGCGGATTTCCTTGTACTGCCTGGTTTGACATGGGAGAGATTTCAGAAGATGCTCCTGATGATATCGAGGGGTTAGATGCCTCAGCAGCGCATGTCGCAAACCTTTTGTCAACAGAGCCTGCTAATGTAAAACTTGGTGTTGGGGGCTTCAGTATGGGTGCTGCAACTGCCCTCTACTCTGCTACGTGCCGTGTTTTAGGGCAATATGGGAATGGAAACCCGTACCCAATTAACCTAAGTGCAATTGTTGGTTTAAGTGGCTGGCTTCCGTGTTCAAGAACTTTGAGGAATCGGATGGAAAGGTCGCACGAGGCTGCAAGGCATGCAGCATCATTGCCCATTTTGCTATGTCATGGCTTAGGTGATGACGAGGTTGCATATGCACACGGAGAGAAATCTGCGCAGACCTTGAGTTCAGCAGGATTTAGAAACCTCGTGTTTAGAAAATACAACGGGCTGGGTCACTACACAATCCCTGAAGAGACCGATGACGTTTGTACTTGGCTAACTGCAAGTTTGGGGCTTGAGGGGTCCCGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

289

Amino Acids

31.06

Weight (kDa)

7.19

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	66, 726
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	1 cut(s)	327
AcuI	CTGAAG	2 cut(s)	457, 822
AfaI	GTAC	3 cut(s)	340, 548, 823
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	600
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	4 cut(s)	99, 108, 240, 250
AluI	AGCT	4 cut(s)	99, 108, 240, 250
Alw26I	GTCTC	2 cut(s)	181, 800
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	176, 217
ApeKI	GCWGC	5 cut(s)	211, 410, 485, 638, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	3 cut(s)	67, 415, 727
AspS9I	GGNCC	3 cut(s)	162, 243, 855
AsuHPI	GGTGA	2 cut(s)	236, 698
AsuNHI	GCTAGC	1 cut(s)	137
AvaII	GGWCC	3 cut(s)	162, 243, 855
BanII	GRGCYC	1 cut(s)	236
BauI	CACGAG	2 cut(s)	632, 758
BbvCI	CCTCAGC	1 cut(s)	406
BbvI	GCAGC	5 cut(s)	198, 422, 472, 625, 662
BccI	CCATC	1 cut(s)	613
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	181, 800
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	5 cut(s)	212, 411, 486, 639, 651
BlsI	GCNGC	5 cut(s)	213, 412, 487, 640, 652
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	3 cut(s)	162, 243, 855
BmgT120I	GGNCC	3 cut(s)	162, 243, 855
BmiI	GGNNCC	4 cut(s)	164, 245, 856, 857
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	3 cut(s)	364, 391, 662
BmtI	GCTAGC	1 cut(s)	141
Bpu10I	CCTNAGC	2 cut(s)	406, 682
BpuEI	CTTGAG	2 cut(s)	220, 754
BsaAI	YACGTR	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse3DI	GCAATG	2 cut(s)	39, 656
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	99, 624
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	2 cut(s)	39, 656
BseMII	CTCAG	1 cut(s)	420
BseXI	GCAGC	5 cut(s)	198, 422, 472, 625, 662
BseYI	CCCAGC	2 cut(s)	246, 781
BshFI	GGCC	2 cut(s)	178, 219
BslFI	GGGAC	2 cut(s)	229, 841
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	181, 800
BsmFI	GGGAC	2 cut(s)	229, 841
BsnI	GGCC	2 cut(s)	178, 219
Bso31I	GGTCTC	1 cut(s)	800
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	860
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	2 cut(s)	178, 219
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	4 cut(s)	164, 245, 856, 857
BspOI	GCTAGC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	800
BsrDI	GCAATG	2 cut(s)	39, 656
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	860
BssSI	CACGAG	2 cut(s)	632, 758
BssT1I	CCWWGG	1 cut(s)	220
Bst2BI	CACGAG	2 cut(s)	632, 758
Bst2UI	CCWGG	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	273, 798
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	510
BstC8I	GCNNGC	4 cut(s)	139, 444, 587, 648
BstDEI	CTNAG	4 cut(s)	406, 560, 682, 864
BstF5I	GGATG	2 cut(s)	99, 624
BstHHI	GCGC	3 cut(s)	67, 415, 727
BstKTI	GATC	1 cut(s)	863
BstMAI	GTCTC	2 cut(s)	181, 800
BstMBI	GATC	1 cut(s)	860
BstMWI	GCNNNNNNNGC	7 cut(s)	105, 143, 410, 419, 491, 647, 667
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	419, 650
BstSCI	CCNGG	1 cut(s)	344
BstV1I	GCAGC	5 cut(s)	198, 422, 472, 625, 662
BsuRI	GGCC	2 cut(s)	178, 219
BtsCI	GGATG	2 cut(s)	99, 624
Cac8I	GCNNGC	4 cut(s)	139, 444, 587, 648
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	3 cut(s)	67, 415, 727
Cfr13I	GGNCC	3 cut(s)	162, 243, 855
Csp6I	GTAC	3 cut(s)	339, 547, 822
CviAII	CATG	6 cut(s)	167, 215, 355, 416, 647, 677
CviQI	GTAC	3 cut(s)	339, 547, 822
DdeI	CTNAG	4 cut(s)	406, 560, 682, 864
DpnI	GATC	1 cut(s)	862
DpnII	GATC	1 cut(s)	860
Eam1104I	CTCTTC	2 cut(s)	273, 798
EarI	CTCTTC	2 cut(s)	273, 798
EciI	GGCGGA	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	800
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	3 cut(s)	162, 243, 855
Eco57I	CTGAAG	2 cut(s)	457, 822
EcoO109I	RGGNCCY	2 cut(s)	162, 855
EcoRII	CCWGG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	6 cut(s)	170, 218, 358, 419, 650, 680
FaqI	GGGAC	2 cut(s)	229, 841
FatI	CATG	6 cut(s)	166, 214, 354, 415, 646, 676
FauNDI	CATATG	1 cut(s)	703
Fnu4HI	GCNGC	5 cut(s)	212, 411, 486, 639, 651
FokI	GGATG	2 cut(s)	106, 631
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	5 cut(s)	212, 411, 486, 639, 651
FspBI	CTAG	1 cut(s)	138
FspI	TGCGCA	2 cut(s)	66, 726
GlaI	GCGC	3 cut(s)	66, 414, 726
GluI	GCNGC	5 cut(s)	212, 411, 486, 639, 651
GsaI	CCCAGC	2 cut(s)	250, 785
HaeIII	GGCC	2 cut(s)	178, 219
HhaI	GCGC	3 cut(s)	67, 415, 727
Hin1II	CATG	6 cut(s)	170, 218, 358, 419, 650, 680
Hin6I	GCGC	3 cut(s)	65, 413, 725
HinP1I	GCGC	3 cut(s)	65, 413, 725
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	1 cut(s)	613
HphI	GGTGA	2 cut(s)	236, 698
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	3 cut(s)	158, 370, 618
Hpy188III	TCNNGA	4 cut(s)	306, 380, 600, 858
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	3 cut(s)	153, 272, 312
HpyCH4IV	ACGT	2 cut(s)	509, 816
HpyCH4V	TGCA	9 cut(s)	44, 214, 488, 566, 641, 650, 701, 707, 836
HpyF10VI	GCNNNNNNNGC	7 cut(s)	105, 143, 410, 419, 491, 647, 667
HpyF3I	CTNAG	4 cut(s)	406, 560, 682, 864
HpySE526I	ACGT	2 cut(s)	509, 816
Hsp92II	CATG	6 cut(s)	170, 218, 358, 419, 650, 680
HspAI	GCGC	3 cut(s)	65, 413, 725
KflI	GGGWCCC	1 cut(s)	855
Kzo9I	GATC	1 cut(s)	860
LmnI	GCTCC	3 cut(s)	113, 304, 382
Lsp1109I	GCAGC	5 cut(s)	198, 422, 472, 625, 662
LweI	GCATC	3 cut(s)	364, 391, 662
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	2 cut(s)	509, 816
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	1 cut(s)	862
MboI	GATC	1 cut(s)	860
MboII	GAAGA	3 cut(s)	260, 383, 815
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	2 cut(s)	552, 567
MmeI	TCCRAC	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	3 cut(s)	279, 555, 578
MspR9I	CCNGG	1 cut(s)	346
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	7 cut(s)	105, 143, 410, 419, 491, 647, 667
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	1 cut(s)	860
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	6 cut(s)	170, 218, 358, 419, 650, 680
NlaIV	GGNNCC	4 cut(s)	164, 245, 856, 857
NmuCI	GTSAC	1 cut(s)	785
NsbI	TGCGCA	2 cut(s)	66, 726
NspI	RCATGY	2 cut(s)	419, 650
PaeI	GCATGC	1 cut(s)	650
PceI	AGGCCT	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	613
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	5 cut(s)	213, 412, 487, 640, 652
Ppu21I	YACGTR	1 cut(s)	510
PpuMI	RGGWCCY	2 cut(s)	162, 855
Psp5II	RGGWCCY	2 cut(s)	162, 855
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	2 cut(s)	246, 781
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	4 cut(s)	164, 245, 856, 857
PspPI	GGNCC	3 cut(s)	162, 243, 855
PspPPI	RGGWCCY	2 cut(s)	162, 855
PstNI	CAGNNNCTG	1 cut(s)	443
RsaI	GTAC	3 cut(s)	340, 548, 823
RsaNI	GTAC	3 cut(s)	339, 547, 822
SaqAI	TTAA	3 cut(s)	279, 555, 578
SatI	GCNGC	5 cut(s)	212, 411, 486, 639, 651
Sau3AI	GATC	1 cut(s)	860
Sau96I	GGNCC	3 cut(s)	162, 243, 855
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	3 cut(s)	364, 391, 662
SinI	GGWCC	3 cut(s)	162, 243, 855
SmlI	CTYRAG	3 cut(s)	235, 733, 848
SmoI	CTYRAG	3 cut(s)	235, 733, 848
SphI	GCATGC	1 cut(s)	650
Sse9I	AATT	2 cut(s)	552, 567
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	1 cut(s)	327
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	220
TaiI	ACGT	2 cut(s)	512, 819
TaqI	TCGA	2 cut(s)	307, 390
TaqII	GACCGA	1 cut(s)	824
TasI	AATT	2 cut(s)	552, 567
TatI	WGTACW	2 cut(s)	338, 821
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	3 cut(s)	279, 555, 578
Tru9I	TTAA	3 cut(s)	279, 555, 578
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	5 cut(s)	211, 410, 485, 638, 650
Tsp45I	GTSAC	1 cut(s)	785
TspGWI	ACGGA	2 cut(s)	582, 726
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	3 cut(s)	162, 243, 855
XceI	RCATGY	2 cut(s)	419, 650
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.