Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Forward (+)

89198458 .. 89202197

Gene Structure 3740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAGCTTCACATCTCCATCTGTGGGTTCTGGTGGTAGAACTGTTAGAAGGGCATTTGAGTTTGGAAGAACCTATGTAGTCCGACCTAAAGGCAAACACCAGGCCACCATAGTTTGGCTACATGGCCTTGGTGATAATGGCTCAAGCTGGTCCCAGCTCTTGGAAACCCTCCCTCTTCCAAATGTAAGAATGAATACATCTACACTATTGGAAAAGTTGAATGTTCCCATTGTTAGCCATACTTATAATATTGTGCTGCAGATTAAATGGATTTGTCCAACCGCTCCTACTCAACCAATTTCAGTTTTTGGTGGTTTTCCTTCCACTGCTTGGTTTGATGTTGGAGAACTCTCAGAAGATGCTCCGGATGATATGGAGGGCTTGGATGCTTCAGCAGCACATGTAGCTAATTTGCTGTCAACGGAGCCTGATGACATTAAACTTGGAGTTGGAGGTTTTAGTATGGGTGCAGCTACAGCTCTGTACTCAGCCACCTGCTTTGCTATAAAGAAATATGGGAATGGTACTCCATATCCATCCAATCTGAGTGCAGTTGTTGGACTCAGTGGATGGCTTCCATGTTCCAAGACCTTGAGTAAGAAGTTTGAAGAAGCAAGTGAAGCTGCAAGACGTGCTGCCACCTTTCCACTTTTGTTATGTCATGGAAAAGGTGATAATGTGGTTCCTTATAAGTTCGGCGAGAAATCTTCACGAGCTCTGAGTGCAACTGGCTTTCAGGACGTGACGTTCAAATCCTATAATGGGCTTGGTCATTACACAATTCCTGAAGAGATGGATGAGGTTTGTGCTTGGCTAAATTCAAAGTTGGGGCTGGACGGAACTCCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

283

Amino Acids

30.37

Weight (kDa)

6.31

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	25 - 62	2.5e-06	Phospholipase/Carboxylesterase
Abhydrolase_2	PF02230	86 - 273	1.2e-26	Phospholipase/Carboxylesterase
FSH1	PF03959	107 - 241	1.8e-06	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	246, 690
AarI	CACCTGC	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	503
AccB7I	CCANNNNNTGG	3 cut(s)	114, 160, 330
AccBSI	CCGCTC	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	2 cut(s)	375, 807
AfaI	GTAC	2 cut(s)	485, 526
AfiI	CCNNNNNNNGG	5 cut(s)	23, 114, 160, 330, 762
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	4 cut(s)	220, 608, 751, 822
AjiI	CACGTC	2 cut(s)	632, 742
AjnI	CCWGG	1 cut(s)	99
AloI	GAACNNNNNNTCC	2 cut(s)	731, 763
AluBI	AGCT	8 cut(s)	6, 147, 157, 407, 473, 479, 623, 716
AluI	AGCT	8 cut(s)	6, 147, 157, 407, 473, 479, 623, 716
Alw21I	GWGCWC	1 cut(s)	718
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	2 cut(s)	102, 124
ApeKI	GCWGC	5 cut(s)	256, 395, 470, 623, 635
ApoI	RAATTY	1 cut(s)	817
Asp700I	GAANNNNTTC	1 cut(s)	844
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	143, 683
AvaII	GGWCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	718
BauI	CACGAG	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	5 cut(s)	243, 407, 482, 610, 622
BccI	CCATC	4 cut(s)	25, 544, 564, 787
BciT130I	CCWGG	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	257, 474
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	5 cut(s)	257, 396, 471, 624, 636
BlsI	GCNGC	5 cut(s)	258, 397, 472, 625, 637
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	150
BmgBI	CACGTC	2 cut(s)	632, 742
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	152, 426, 684
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	349, 376
BpuEI	CTTGAG	2 cut(s)	127, 613
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 114, 160, 330, 762
Bse1I	ACTGG	1 cut(s)	733
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	5 cut(s)	373, 391, 536, 575, 802
BseLI	CCNNNNNNNGG	5 cut(s)	23, 114, 160, 330, 762
BseMII	CTCAG	5 cut(s)	366, 501, 536, 577, 710
BseNI	ACTGG	1 cut(s)	733
BseXI	GCAGC	5 cut(s)	243, 407, 482, 610, 622
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	489, 570
BshFI	GGCC	2 cut(s)	104, 126
BsiHKAI	GWGCWC	1 cut(s)	718
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	5 cut(s)	23, 114, 160, 330, 762
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	104, 126
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp13I	TCCGGA	1 cut(s)	364
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	2 cut(s)	104, 126
BspCNI	CTCAG	5 cut(s)	365, 500, 537, 576, 711
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	152, 426, 684
BspMAI	CTGCAG	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	503
BsrBI	CCGCTC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	733
BssECI	CCNNGG	1 cut(s)	127
BssSI	CACGAG	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	180, 783
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstDEI	CTNAG	5 cut(s)	352, 487, 545, 563, 719
BstF5I	GGATG	5 cut(s)	373, 391, 536, 575, 802
BstMWI	GCNNNNNNNGC	6 cut(s)	395, 404, 476, 620, 632, 722
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	2 cut(s)	257, 474
BstV1I	GCAGC	5 cut(s)	243, 407, 482, 610, 622
BsuRI	GGCC	2 cut(s)	104, 126
BtrI	CACGTC	2 cut(s)	632, 742
BtsCI	GGATG	5 cut(s)	373, 391, 536, 575, 802
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	324, 571
BveI	ACCTGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	484, 525
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	4 cut(s)	122, 401, 579, 662
CviQI	GTAC	2 cut(s)	484, 525
DdeI	CTNAG	5 cut(s)	352, 487, 545, 563, 719
Eam1104I	CTCTTC	2 cut(s)	180, 783
EarI	CTCTTC	2 cut(s)	180, 783
Ecl136II	GAGCTC	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	716
Eco57I	CTGAAG	2 cut(s)	375, 807
EcoICRI	GAGCTC	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	4 cut(s)	125, 404, 582, 665
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	4 cut(s)	121, 400, 578, 661
Fnu4HI	GCNGC	5 cut(s)	257, 396, 471, 624, 636
FokI	GGATG	5 cut(s)	380, 398, 523, 582, 809
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	5 cut(s)	257, 396, 471, 624, 636
GluI	GCNGC	5 cut(s)	257, 396, 471, 624, 636
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	104, 126
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	4 cut(s)	125, 404, 582, 665
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	1 cut(s)	561
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	2 cut(s)	143, 683
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	83, 355, 546, 720
Hpy188III	TCNNGA	4 cut(s)	365, 711, 737, 785
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	42, 330
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	3 cut(s)	631, 741, 746
HpyCH4V	TGCA	5 cut(s)	259, 470, 551, 626, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	395, 404, 476, 620, 632, 722
HpyF3I	CTNAG	5 cut(s)	352, 487, 545, 563, 719
HpySE526I	ACGT	3 cut(s)	631, 741, 746
Hsp92II	CATG	4 cut(s)	125, 404, 582, 665
Kpn2I	TCCGGA	1 cut(s)	364
LmnI	GCTCC	3 cut(s)	289, 367, 424
Lsp1109I	GCAGC	5 cut(s)	243, 407, 482, 610, 622
LweI	GCATC	2 cut(s)	349, 376
MaeII	ACGT	3 cut(s)	631, 741, 746
MaeIII	GTNAC	1 cut(s)	742
MbiI	CCGCTC	1 cut(s)	284
MboII	GAAGA	6 cut(s)	78, 167, 368, 620, 699, 800
MhlI	GDGCHC	1 cut(s)	718
MluCI	AATT	4 cut(s)	297, 409, 780, 817
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	5 cut(s)	106, 302, 322, 430, 538
MnlI	CCTC	5 cut(s)	179, 183, 370, 446, 793
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	844
MseI	TTAA	2 cut(s)	264, 438
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	6 cut(s)	395, 404, 476, 620, 632, 722
NlaIII	CATG	4 cut(s)	125, 404, 582, 665
NlaIV	GGNNCC	3 cut(s)	152, 426, 684
NmuCI	GTSAC	1 cut(s)	742
NspI	RCATGY	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	503
PciI	ACATGT	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	844
PflMI	CCANNNNNTGG	3 cut(s)	114, 160, 330
PkrI	GCNGC	5 cut(s)	258, 397, 472, 625, 637
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
PscI	ACATGT	1 cut(s)	400
PsiI	TTATAA	2 cut(s)	246, 690
Psp124BI	GAGCTC	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	3 cut(s)	152, 426, 684
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	261
RsaI	GTAC	2 cut(s)	485, 526
RsaNI	GTAC	2 cut(s)	484, 525
SacI	GAGCTC	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	264, 438
SatI	GCNGC	5 cut(s)	257, 396, 471, 624, 636
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	718
SfaNI	GCATC	2 cut(s)	349, 376
SfcI	CTRYAG	2 cut(s)	257, 474
SinI	GGWCC	1 cut(s)	150
SmlI	CTYRAG	2 cut(s)	142, 592
SmoI	CTYRAG	2 cut(s)	142, 592
Sse9I	AATT	4 cut(s)	297, 409, 780, 817
SsiI	CCGC	1 cut(s)	282
SspI	AATATT	1 cut(s)	250
SstI	GAGCTC	1 cut(s)	718
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	3 cut(s)	634, 744, 749
TasI	AATT	4 cut(s)	297, 409, 780, 817
TatI	WGTACW	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	264, 438
Tru9I	TTAA	2 cut(s)	264, 438
TscAI	CASTG	2 cut(s)	331, 571
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	5 cut(s)	256, 395, 470, 623, 635
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	2 cut(s)	206, 837
TspGWI	ACGGA	2 cut(s)	437, 852
TspRI	CASTG	2 cut(s)	331, 571
Van91I	CCANNNNNTGG	3 cut(s)	114, 160, 330
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.