Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8384817.1

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

407 .. 1090

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8384817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgggtgcagctacagctctgtactcagccacctgctttgctatacagaaatatgggaatggtactccatatccatccaatctgagtgcagttgttggactcagtggatggcttccatgttccaagaccttgagtaagaagtttgaagaagcaagtgaagctgcaagacgtgctgcctcctttccacttttgttatgtcatggaaaaggtgatgatgtggttccttataagttcggcgagaaatcttcacgagctctgagtgcaactggcttccaggacgtgacgttcaaatcctataatgggcttggtcattacacaattcctgaagagatggatgaggtttgtgcttggctaaattcaaagttggggctggacggaactccttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

129

Amino Acids

13.75

Weight (kDa)

6.71

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AarI	CACCTGC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	23, 64
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	146, 289, 360
AjiI	CACGTC	2 cut(s)	170, 280
AjnI	CCWGG	1 cut(s)	273
AloI	GAACNNNNNNTCC	2 cut(s)	269, 301
AluBI	AGCT	4 cut(s)	11, 17, 161, 254
AluI	AGCT	4 cut(s)	11, 17, 161, 254
Alw21I	GWGCWC	1 cut(s)	256
ApeKI	GCWGC	3 cut(s)	8, 161, 173
ApoI	RAATTY	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	20, 148, 160
BccI	CCATC	3 cut(s)	82, 102, 325
BciT130I	CCWGG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	9, 162, 174
BlsI	GCNGC	3 cut(s)	10, 163, 175
Bme1390I	CCNGG	1 cut(s)	275
BmgBI	CACGTC	2 cut(s)	170, 280
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	275
BseGI	GGATG	3 cut(s)	74, 113, 340
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	4 cut(s)	39, 74, 115, 248
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	3 cut(s)	20, 148, 160
BsgI	GTGCAG	2 cut(s)	27, 108
BsiHKAI	GWGCWC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	256
BspCNI	CTCAG	4 cut(s)	38, 75, 114, 249
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstDEI	CTNAG	4 cut(s)	25, 83, 101, 257
BstF5I	GGATG	3 cut(s)	74, 113, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 158, 170, 260
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	20, 148, 160
BtrI	CACGTC	2 cut(s)	170, 280
BtsCI	GGATG	3 cut(s)	74, 113, 340
BtsIMutI	CAGTG	1 cut(s)	109
BveI	ACCTGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	22, 63
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	2 cut(s)	117, 200
CviQI	GTAC	2 cut(s)	22, 63
DdeI	CTNAG	4 cut(s)	25, 83, 101, 257
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	2 cut(s)	120, 203
FaiI	YATR	9 cut(s)	44, 54, 70, 118, 196, 201, 228, 297, 388
FatI	CATG	2 cut(s)	116, 199
Fnu4HI	GCNGC	3 cut(s)	9, 162, 174
FokI	GGATG	3 cut(s)	61, 120, 347
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	3 cut(s)	9, 162, 174
GluI	GCNGC	3 cut(s)	9, 162, 174
Hin1II	CATG	2 cut(s)	120, 203
HinfI	GANTC	1 cut(s)	99
HphI	GGTGA	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	84, 258
Hpy188III	TCNNGA	2 cut(s)	249, 323
HpyCH4IV	ACGT	3 cut(s)	169, 279, 284
HpyCH4V	TGCA	4 cut(s)	8, 89, 164, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 158, 170, 260
HpyF3I	CTNAG	4 cut(s)	25, 83, 101, 257
HpySE526I	ACGT	3 cut(s)	169, 279, 284
Hsp92II	CATG	2 cut(s)	120, 203
LpnPI	CCDG	6 cut(s)	46, 252, 260, 287, 336, 356
Lsp1109I	GCAGC	3 cut(s)	20, 148, 160
MaeII	ACGT	3 cut(s)	169, 279, 284
MaeIII	GTNAC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	158, 237, 338
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	2 cut(s)	318, 355
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	2 cut(s)	187, 331
MroXI	GAANNNNTTC	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	4 cut(s)	14, 158, 170, 260
NlaIII	CATG	2 cut(s)	120, 203
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	382
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	10, 163, 175
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PsiI	TTATAA	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	222
RsaI	GTAC	2 cut(s)	23, 64
RsaNI	GTAC	2 cut(s)	22, 63
SacI	GAGCTC	1 cut(s)	256
SatI	GCNGC	3 cut(s)	9, 162, 174
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	2 cut(s)	318, 355
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	273
TaiI	ACGT	3 cut(s)	172, 282, 287
TasI	AATT	2 cut(s)	318, 355
TatI	WGTACW	1 cut(s)	21
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	8, 161, 173
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	375
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.