Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

3519772 .. 3523545

Gene Structure 3774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAGCTTCACGTCTCCATCTGTGGGTTCTGGTGGTAGAACTGTTAGAAGGGCATTTGAGTTTGGAAGAACCTATGTAGTCCGACCTAAAGGCAAACACCAGGCCACCGTAGTTTGGCTACATGGCCTTGGTGATAATGGCTCAAGCTGGTCCCAGCTCTTGGAAACCCTCCCTCTTCCAAATATTAAATGGATTTGTCCAACTGCTCCTACTCAACCAATTTCAGTTTTTGGTGGTTTTCCTTCCACTGCTTGGTTTGATGTTGGAGAACTCTCAGAAGATGCTCCGGATGATATGGAGGGCTTGGATGCTTCAGCAGCACATGTAGCTAATTTGCTGTCAACGGAGCCCGATGACATTAAACTTGGAGTTGGAGGTTTTAGTATGGGTGCAGCTACAGCTTTGTACTCAGCCACCTGCTTTGCTATAAAGAAATATGGGAATGGTACTCCATATCCATCCAATCTGAGTGCAGTTGTTGGACTCAGTGGATGGCTTCCATGTTCCAAGTTTGGCTTCTCACACTCCTCCTCATCTCAGTTTAACCCCTCTATCTTCTTTTGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

189

Amino Acids

20.02

Weight (kDa)

6.04

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	25 - 171	1.6e-27	Phospholipase/Carboxylesterase
Abhydrolase_6	PF12697	37 - 138	7.4e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	425
AccB7I	CCANNNNNTGG	2 cut(s)	160, 252
AccIII	TCCGGA	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	2 cut(s)	407, 448
AfiI	CCNNNNNNNGG	4 cut(s)	23, 114, 160, 252
AflIII	ACRYGT	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	6 cut(s)	6, 147, 157, 329, 395, 401
AluI	AGCT	6 cut(s)	6, 147, 157, 329, 395, 401
Alw26I	GTCTC	1 cut(s)	18
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	2 cut(s)	102, 124
ApeKI	GCWGC	2 cut(s)	317, 392
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	329, 404
BccI	CCATC	3 cut(s)	25, 466, 486
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	2 cut(s)	318, 393
BlsI	GCNGC	2 cut(s)	319, 394
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	152, 348
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	271, 298
BpuEI	CTTGAG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 114, 160, 252
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	4 cut(s)	295, 313, 458, 497
BseLI	CCNNNNNNNGG	4 cut(s)	23, 114, 160, 252
BseMII	CTCAG	5 cut(s)	288, 423, 458, 499, 551
BseRI	GAGGAG	2 cut(s)	517, 520
BseXI	GCAGC	2 cut(s)	329, 404
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	411, 492
BshFI	GGCC	2 cut(s)	104, 126
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	4 cut(s)	23, 114, 160, 252
BsmAI	GTCTC	1 cut(s)	18
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	104, 126
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	286
BspANI	GGCC	2 cut(s)	104, 126
BspCNI	CTCAG	5 cut(s)	287, 422, 459, 498, 550
BspEI	TCCGGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	152, 348
BspMI	ACCTGC	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	43, 109
Bst6I	CTCTTC	1 cut(s)	180
BstDEI	CTNAG	5 cut(s)	274, 409, 467, 485, 537
BstF5I	GGATG	4 cut(s)	295, 313, 458, 497
BstMAI	GTCTC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 326, 398
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	329, 404
BsuRI	GGCC	2 cut(s)	104, 126
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	295, 313, 458, 497
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	246, 493
BveI	ACCTGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	406, 447
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	3 cut(s)	122, 323, 501
CviQI	GTAC	2 cut(s)	406, 447
DdeI	CTNAG	5 cut(s)	274, 409, 467, 485, 537
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	3 cut(s)	125, 326, 504
FaiI	YATR	9 cut(s)	75, 123, 296, 324, 386, 428, 438, 454, 502
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	121, 322, 500
Fnu4HI	GCNGC	2 cut(s)	318, 393
FokI	GGATG	4 cut(s)	302, 320, 445, 504
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	318, 393
GluI	GCNGC	2 cut(s)	318, 393
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	104, 126
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	3 cut(s)	125, 326, 504
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	483
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	3 cut(s)	83, 277, 468
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	42, 252
HpyCH4III	ACNGT	2 cut(s)	43, 109
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	392, 473, 564
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 326, 398
HpyF3I	CTNAG	5 cut(s)	274, 409, 467, 485, 537
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	125, 326, 504
Kpn2I	TCCGGA	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	211, 289, 346
LpnPI	CCDG	7 cut(s)	15, 86, 113, 133, 167, 300, 430
Lsp1109I	GCAGC	2 cut(s)	329, 404
LweI	GCATC	2 cut(s)	271, 298
MaeII	ACGT	1 cut(s)	11
MboII	GAAGA	4 cut(s)	78, 167, 290, 547
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	2 cut(s)	219, 331
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	5 cut(s)	106, 224, 244, 352, 460
MnlI	CCTC	7 cut(s)	179, 183, 292, 368, 538, 541, 559
MroI	TCCGGA	1 cut(s)	286
MseI	TTAA	3 cut(s)	186, 360, 543
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	317, 326, 398
NlaIII	CATG	3 cut(s)	125, 326, 504
NlaIV	GGNNCC	2 cut(s)	152, 348
NspI	RCATGY	1 cut(s)	326
PaqCI	CACCTGC	1 cut(s)	425
PciI	ACATGT	1 cut(s)	322
PflMI	CCANNNNNTGG	2 cut(s)	160, 252
PkrI	GCNGC	2 cut(s)	319, 394
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
PscI	ACATGT	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	152, 348
PspPI	GGNCC	1 cut(s)	150
RsaI	GTAC	2 cut(s)	407, 448
RsaNI	GTAC	2 cut(s)	406, 447
SaqAI	TTAA	3 cut(s)	186, 360, 543
SatI	GCNGC	2 cut(s)	318, 393
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	2 cut(s)	271, 298
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	219, 331
SspI	AATATT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	43, 109
TaiI	ACGT	1 cut(s)	14
TasI	AATT	2 cut(s)	219, 331
TatI	WGTACW	1 cut(s)	405
Tru1I	TTAA	3 cut(s)	186, 360, 543
Tru9I	TTAA	3 cut(s)	186, 360, 543
TscAI	CASTG	2 cut(s)	253, 493
TseI	GCWGC	2 cut(s)	317, 392
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	253, 493
Van91I	CCANNNNNTGG	2 cut(s)	160, 252
VpaK11BI	GGWCC	1 cut(s)	150
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.