Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

22912999 .. 22917883

Gene Structure 4885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29580.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGCTACAATAATCCCAATACTGGTTCTGGTAGTAGAACTGGGAGGTTGGAGTTTGGAAGGACTCATGTGGTCAGGCCAAAAGGGACACACCAAGCAACTATAGTTTGGCTTCATGGCCTTGGTGATAAGGGCTCAAGTTGGTCCCAGCTCTTGGAAACCCTTCCTCTTCCAAATATCAAGTGGATTTGCCCTACTGCTCCCTCTCGGCCTGTAGCATTATTTGGCGGATTTCCTTGCACTGCTTGGTTTGACATGGGGGACATTTCAGAAGATGCTCCTGATGACATGGAGGGGTTAGATGCCTCAGCAGCGCATGTTGCAAATCTCTTGTCAACAGAACCTGCTGATATAAAACTAGGTGTTGGAGGCTTCAGCATGGGTGCTGCAACTGCCCTCTACTCTGCCACATGTCGCGTTTTAGGCCAATATGGAAATGGAAACCCATATCCAGTTAACCTTAGTGCAATTGTTGGTCTAAGTGGCTGGCTGCCATGTTCGAGGACCTTAAGGAACCGGATGGAAAGGTCACGCGAGGCTTCAAGGCATGCAGCATCCTTGCCCATTTTGATTTGTCATGGCACAGGTGATGATGTGGTTGCACATAAACATGGAGAGAAATCCGCACAGACCTTAAGTGCAGCTGGATTTCAAAATCTCATGTTTAGAACATACAATGGTCTAGGCCATTATACCATCCCTGAAGAAACTGATGAACTTTGTACTTGGCTGACTGCAAGTTTGGGGCTTGAAGGATCCCGATCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

257

Amino Acids

27.45

Weight (kDa)

6.29

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	23 - 245	1e-36	Phospholipase/Carboxylesterase
FSH1	PF03959	81 - 212	1e-05	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccII	CGCG	2 cut(s)	417, 534
AciI	CCGC	2 cut(s)	228, 624
AclWI	GGATC	2 cut(s)	750, 763
AcuI	CTGAAG	2 cut(s)	358, 723
AfaI	GTAC	1 cut(s)	724
AfiI	CCNNNNNNNGG	2 cut(s)	23, 154
AflII	CTTAAG	2 cut(s)	508, 634
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	543, 653, 752
AluBI	AGCT	3 cut(s)	6, 151, 644
AluI	AGCT	3 cut(s)	6, 151, 644
AlwI	GGATC	2 cut(s)	750, 763
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	5 cut(s)	77, 118, 209, 424, 685
ApeKI	GCWGC	5 cut(s)	311, 386, 490, 551, 641
ArsI	GACNNNNNNTTYG	4 cut(s)	317, 349, 724, 756
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	144, 504
AsuHPI	GGTGA	2 cut(s)	137, 599
AvaII	GGWCC	2 cut(s)	144, 504
BamHI	GGATCC	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	307
BbvI	GCAGC	5 cut(s)	323, 373, 477, 563, 653
BccI	CCATC	2 cut(s)	514, 704
BfaI	CTAG	3 cut(s)	359, 683, 769
BfmI	CTRYAG	2 cut(s)	102, 213
BfrI	CTTAAG	2 cut(s)	508, 634
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	5 cut(s)	312, 387, 491, 552, 642
BlsI	GCNGC	5 cut(s)	313, 388, 492, 553, 643
Bme18I	GGWCC	2 cut(s)	144, 504
BmgT120I	GGNCC	2 cut(s)	144, 504
BmiI	GGNNCC	3 cut(s)	146, 515, 757
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	3 cut(s)	265, 292, 563
BmuI	ACTGGG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	121
BsaBI	GATNNNNATC	1 cut(s)	760
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 154
Bse1I	ACTGG	3 cut(s)	28, 46, 452
Bse8I	GATNNNNATC	1 cut(s)	760
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	3 cut(s)	525, 554, 696
BseJI	GATNNNNATC	1 cut(s)	760
BseLI	CCNNNNNNNGG	2 cut(s)	23, 154
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	28, 46, 452
BseXI	GCAGC	5 cut(s)	323, 373, 477, 563, 653
BseYI	CCCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	2 cut(s)	417, 534
BshFI	GGCC	5 cut(s)	79, 120, 211, 426, 687
BsiSI	CCGG	1 cut(s)	517
BslFI	GGGAC	3 cut(s)	100, 130, 275
BslI	CCNNNNNNNGG	2 cut(s)	23, 154
BsmFI	GGGAC	3 cut(s)	100, 130, 275
BsnI	GGCC	5 cut(s)	79, 120, 211, 426, 687
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	755, 761
BspACI	CCGC	2 cut(s)	228, 624
BspANI	GGCC	5 cut(s)	79, 120, 211, 426, 687
BspCNI	CTCAG	1 cut(s)	320
BspFNI	CGCG	2 cut(s)	417, 534
BspLI	GGNNCC	3 cut(s)	146, 515, 757
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	750, 763
BspTI	CTTAAG	2 cut(s)	508, 634
BsrI	ACTGG	3 cut(s)	28, 46, 452
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	755, 761
BssT1I	CCWWGG	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	2 cut(s)	508, 634
BstC8I	GCNNGC	2 cut(s)	488, 549
BstDEI	CTNAG	3 cut(s)	307, 461, 479
BstF5I	GGATG	3 cut(s)	525, 554, 696
BstFNI	CGCG	2 cut(s)	417, 534
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	758, 764
BstMBI	GATC	2 cut(s)	755, 761
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 320, 392, 423
BstNSI	RCATGY	3 cut(s)	320, 414, 551
BstSFI	CTRYAG	2 cut(s)	102, 213
BstUI	CGCG	2 cut(s)	417, 534
BstV1I	GCAGC	5 cut(s)	323, 373, 477, 563, 653
BstX2I	RGATCY	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	755
BsuRI	GGCC	5 cut(s)	79, 120, 211, 426, 687
BtsCI	GGATG	3 cut(s)	525, 554, 696
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	488, 549
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	144, 504
Csp6I	GTAC	1 cut(s)	723
CviQI	GTAC	1 cut(s)	723
DdeI	CTNAG	3 cut(s)	307, 461, 479
DpnI	GATC	2 cut(s)	757, 763
DpnII	GATC	2 cut(s)	755, 761
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	144, 504
Eco57I	CTGAAG	2 cut(s)	358, 723
EcoO109I	RGGNCCY	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	121
FaqI	GGGAC	3 cut(s)	100, 130, 275
Fnu4HI	GCNGC	5 cut(s)	312, 387, 491, 552, 642
FokI	GGATG	3 cut(s)	532, 541, 683
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	312, 387, 491, 552, 642
FspBI	CTAG	3 cut(s)	359, 683, 769
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	5 cut(s)	312, 387, 491, 552, 642
GsaI	CCCAGC	1 cut(s)	151
HaeIII	GGCC	5 cut(s)	79, 120, 211, 426, 687
HapII	CCGG	1 cut(s)	517
HhaI	GCGC	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	2 cut(s)	336, 457
HindII	GTYRAC	2 cut(s)	336, 457
HinfI	GANTC	1 cut(s)	64
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	2 cut(s)	137, 599
Hpy166II	GTNNAC	2 cut(s)	336, 457
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	2 cut(s)	281, 759
Hpy8I	GTNNAC	2 cut(s)	336, 457
HpyAV	CCTTC	3 cut(s)	54, 173, 746
HpyCH4V	TGCA	8 cut(s)	240, 323, 389, 467, 551, 602, 641, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 320, 392, 423
HpyF3I	CTNAG	3 cut(s)	307, 461, 479
HspAI	GCGC	1 cut(s)	314
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	755, 761
LmnI	GCTCC	2 cut(s)	205, 283
Lsp1109I	GCAGC	5 cut(s)	323, 373, 477, 563, 653
LweI	GCATC	3 cut(s)	265, 292, 563
MaeI	CTAG	3 cut(s)	359, 683, 769
MaeIII	GTNAC	1 cut(s)	528
MalI	GATC	2 cut(s)	757, 763
MboI	GATC	2 cut(s)	755, 761
MboII	GAAGA	3 cut(s)	161, 284, 716
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	755
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	2 cut(s)	30, 346
MnlI	CCTC	9 cut(s)	39, 177, 214, 286, 316, 362, 407, 495, 529
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	3 cut(s)	456, 509, 635
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	644
MspCI	CTTAAG	2 cut(s)	508, 634
MspI	CCGG	1 cut(s)	517
MunI	CAATTG	1 cut(s)	468
MvnI	CGCG	2 cut(s)	417, 534
MwoI	GCNNNNNNNGC	4 cut(s)	311, 320, 392, 423
NdeII	GATC	2 cut(s)	755, 761
NlaIV	GGNNCC	3 cut(s)	146, 515, 757
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	528
NspI	RCATGY	3 cut(s)	320, 414, 551
PaeI	GCATGC	1 cut(s)	551
PciI	ACATGT	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	5 cut(s)	313, 388, 492, 553, 643
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	504
PscI	ACATGT	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	146, 515, 757
PspPI	GGNCC	2 cut(s)	144, 504
PspPPI	RGGWCCY	1 cut(s)	504
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	755
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	724
RsaNI	GTAC	1 cut(s)	723
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	456, 509, 635
SatI	GCNGC	5 cut(s)	312, 387, 491, 552, 642
Sau3AI	GATC	2 cut(s)	755, 761
Sau96I	GGNCC	2 cut(s)	144, 504
SchI	GAGTC	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	3 cut(s)	265, 292, 563
SfcI	CTRYAG	2 cut(s)	102, 213
SinI	GGWCC	2 cut(s)	144, 504
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	3 cut(s)	136, 508, 634
SmoI	CTYRAG	3 cut(s)	136, 508, 634
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	1 cut(s)	468
SsiI	CCGC	2 cut(s)	228, 624
SspMI	CTAG	3 cut(s)	359, 683, 769
StyI	CCWWGG	1 cut(s)	121
TaqI	TCGA	1 cut(s)	500
TasI	AATT	1 cut(s)	468
TatI	WGTACW	1 cut(s)	722
Tru1I	TTAA	3 cut(s)	456, 509, 635
Tru9I	TTAA	3 cut(s)	456, 509, 635
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	528
TseI	GCWGC	5 cut(s)	311, 386, 490, 551, 641
Tsp45I	GTSAC	1 cut(s)	528
TspDTI	ATGAA	2 cut(s)	104, 729
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	154
Vha464I	CTTAAG	2 cut(s)	508, 634
VpaK11BI	GGWCC	2 cut(s)	144, 504
XceI	RCATGY	3 cut(s)	320, 414, 551
XcmI	CCANNNNNNNNNTGG	2 cut(s)	180, 434
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	3 cut(s)	359, 683, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.