Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7984268.1

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 516

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7984268.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 199 bp

tgtacttataatattgtgacgcagattaaatggatttgtccaactgctcctactcaaccaatttcagtttttggtggttttccttccactgcttggtttgatgttggagaactctcagaagatgctccagatgatatggagggcttggatgcttcagcagcacatgtagctaatttgctgtcaacggagcccgatgaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

66

Amino Acids

7.06

Weight (kDa)

4.05

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	93
AflIII	ACRYGT	1 cut(s)	163
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	2 cut(s)	112, 139
BpmI	CTGGAG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstNSI	RCATGY	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	3
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	3 cut(s)	144, 170, 190
CviKI_1	RGCY	3 cut(s)	144, 170, 190
CviQI	GTAC	1 cut(s)	3
DdeI	CTNAG	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	1 cut(s)	167
FaiI	YATR	3 cut(s)	9, 137, 165
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
HpyF3I	CTNAG	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	167
LmnI	GCTCC	3 cut(s)	52, 130, 187
LpnPI	CCDG	1 cut(s)	141
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	2 cut(s)	112, 139
MaeIII	GTNAC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	60, 172
MmeI	TCCRAC	2 cut(s)	65, 85
MnlI	CCTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	167
PciI	ACATGT	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	4
RsaNI	GTAC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	1 cut(s)	172
SfaNI	GCATC	2 cut(s)	112, 139
SgeI	CNNG	4 cut(s)	105, 140, 157, 176
Sse9I	AATT	2 cut(s)	60, 172
SspI	AATATT	1 cut(s)	13
TasI	AATT	2 cut(s)	60, 172
TatI	WGTACW	1 cut(s)	2
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	93
XceI	RCATGY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.