Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

42047558 .. 42048362

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTGTTGCACAAGAATGCCTTGCTTCACCGGGTATGTTATAACCCTAGCAATATGTTGGGGGATGTCCTCAGCTGGTTGAATCAGTGTGCTATGGACTTGTCGTTATCTCAGTTTGGTGAACTCTTGTTCTCTCTATGGGGGATTTGGAAGGAAAGAAATGATCGAGTTTGGAACCAAAAGAGGTGTGAGGCTAGGGATGTTAGTTTGGGGATTGTTTCCAGGCTGCAGGAGTTTAGGTTTCATAATTTGAAGCCTTCCCAGCCCAAAACTACATGCCGAGCTGTGTGGAGAGCTCCTCCATTGGGGCTGGTTAAGATCAATGTGGATGGTGCCTTCCATCATGCTACTAGAAAAGGTGGTTTGGGTTTTGTGATCAGAAATGAGTCTGGGATGATGTTAGGGGGAGGTGCTTGGCCCTTGAGTGGTTTGACTTCTCCGGAGCATGCTGAAATCTTGGCCTGCAAAGCTGCGCTAGAGTTTGTGGGGGAGCACGATTTTGTTATACTGGAAACCGATGCTATGGAGGTTCGGCGTCAACTTTCATTGCATGACACTGCTAATCTATCTTTACTGGGCAGAATATATGATGATGTAGTGGCTCTGTTAGAAGCACAGAATGTTGTGCAGGTGCTACACGTAGGTCGCCAAGGTAATGGAGTAGCACATTTGTTGGCTAATCATGCCCATTCCCTTCGGCAGAATGCTTTTTATTTTTCAGTCCCAGAATTTTTACAAGCTGCGATTGCAGCTGAGCTTTGTACTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

256

Amino Acids

28.53

Weight (kDa)

7.2

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	108 - 229	3.4e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AarI	CACCTGC	1 cut(s)	619
Acc36I	ACCTGC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	332
AccIII	TCCGGA	1 cut(s)	439
AcsI	RAATTY	1 cut(s)	728
AcyI	GRCGYC	1 cut(s)	535
AfaI	GTAC	1 cut(s)	763
AfiI	CCNNNNNNNGG	2 cut(s)	305, 425
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	2 cut(s)	82, 253
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	7 cut(s)	75, 284, 296, 470, 740, 752, 757
AluI	AGCT	7 cut(s)	75, 284, 296, 470, 740, 752, 757
Alw21I	GWGCWC	2 cut(s)	298, 495
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	2 cut(s)	416, 459
ApeKI	GCWGC	4 cut(s)	226, 470, 740, 749
ApoI	RAATTY	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	20, 131
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	2 cut(s)	298, 495
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	213, 457, 727, 761
BccI	CCATC	2 cut(s)	323, 348
BciT130I	CCWGG	1 cut(s)	223
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	32
BfaI	CTAG	4 cut(s)	48, 195, 351, 476
BfmI	CTRYAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	4 cut(s)	227, 471, 741, 750
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	4 cut(s)	228, 472, 742, 751
Bme1390I	CCNGG	2 cut(s)	32, 223
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	176, 334
BmrFI	CCNGG	2 cut(s)	32, 223
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	508
BmuI	ACTGGG	1 cut(s)	584
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	640
BsaHI	GRCGYC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	649
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 425
Bse1I	ACTGG	2 cut(s)	513, 579
Bse3DI	GCAATG	1 cut(s)	545
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	4 cut(s)	70, 205, 334, 399
BseLI	CCNNNNNNNGG	2 cut(s)	305, 425
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	3 cut(s)	85, 125, 744
BseNI	ACTGG	2 cut(s)	513, 579
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	4 cut(s)	213, 457, 727, 761
BseYI	CCCAGC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	647
BshFI	GGCC	2 cut(s)	418, 461
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	298, 495
BsiSI	CCGG	2 cut(s)	31, 440
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	2 cut(s)	305, 425
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	2 cut(s)	22, 709
BsnI	GGCC	2 cut(s)	418, 461
Bsp1286I	GDGCHC	2 cut(s)	298, 495
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	163, 318, 375
Bsp1720I	GCTNAGC	1 cut(s)	753
BspANI	GGCC	2 cut(s)	418, 461
BspCNI	CTCAG	3 cut(s)	84, 124, 745
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	176, 334
BspMAI	CTGCAG	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	619
BspT107I	GGYRCC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	513, 579
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	3 cut(s)	163, 318, 375
BssNI	GRCGYC	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	649
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	766
BstACI	GRCGYC	1 cut(s)	535
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	2 cut(s)	447, 463
BstDEI	CTNAG	3 cut(s)	71, 111, 753
BstF5I	GGATG	4 cut(s)	70, 205, 334, 399
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	3 cut(s)	166, 321, 378
BstMBI	GATC	3 cut(s)	163, 318, 375
BstMWI	GCNNNNNNNGC	5 cut(s)	262, 467, 683, 746, 749
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	2 cut(s)	279, 449
BstSCI	CCNGG	2 cut(s)	30, 221
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	4 cut(s)	213, 457, 727, 761
BstXI	CCANNNNNNTGG	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	418, 461
BtsCI	GGATG	4 cut(s)	70, 205, 334, 399
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	92, 555
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	2 cut(s)	447, 463
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	762
CviAII	CATG	5 cut(s)	276, 344, 446, 551, 683
CviQI	GTAC	1 cut(s)	762
DdeI	CTNAG	3 cut(s)	71, 111, 753
DpnI	GATC	3 cut(s)	165, 320, 377
DpnII	GATC	3 cut(s)	163, 318, 375
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	5 cut(s)	279, 347, 449, 554, 686
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	5 cut(s)	275, 343, 445, 550, 682
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	227, 471, 741, 750
FokI	GGATG	4 cut(s)	77, 212, 341, 406
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	227, 471, 741, 750
FspBI	CTAG	4 cut(s)	48, 195, 351, 476
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	4 cut(s)	227, 471, 741, 750
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	418, 461
HapII	CCGG	2 cut(s)	31, 440
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	535
Hin1II	CATG	5 cut(s)	279, 347, 449, 554, 686
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	539
HindII	GTYRAC	1 cut(s)	539
HinfI	GANTC	2 cut(s)	82, 386
HpaII	CCGG	2 cut(s)	31, 440
HphI	GGTGA	2 cut(s)	20, 131
Hpy166II	GTNNAC	2 cut(s)	122, 539
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	122, 539
HpyAV	CCTTC	4 cut(s)	145, 267, 346, 704
HpyCH4III	ACNGT	1 cut(s)	766
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	6 cut(s)	10, 229, 465, 550, 628, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	262, 467, 683, 746, 749
HpyF3I	CTNAG	3 cut(s)	71, 111, 753
HpySE526I	ACGT	1 cut(s)	639
Hsp92I	GRCGYC	1 cut(s)	535
Hsp92II	CATG	5 cut(s)	279, 347, 449, 554, 686
HspAI	GCGC	1 cut(s)	473
Kpn2I	TCCGGA	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	163, 318, 375
LmnI	GCTCC	3 cut(s)	301, 442, 490
Lsp1109I	GCAGC	4 cut(s)	213, 457, 727, 761
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	4 cut(s)	48, 195, 351, 476
MaeII	ACGT	1 cut(s)	639
MalI	GATC	3 cut(s)	165, 320, 377
MboI	GATC	3 cut(s)	163, 318, 375
MhlI	GDGCHC	2 cut(s)	298, 495
MluCI	AATT	2 cut(s)	247, 728
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	6 cut(s)	80, 177, 184, 309, 401, 520
MroI	TCCGGA	1 cut(s)	439
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	2 cut(s)	75, 752
MspI	CCGG	2 cut(s)	31, 440
MspR9I	CCNGG	2 cut(s)	32, 223
Mva1269I	GAATGC	2 cut(s)	22, 709
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	5 cut(s)	262, 467, 683, 746, 749
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	3 cut(s)	163, 318, 375
NlaIII	CATG	5 cut(s)	279, 347, 449, 554, 686
NlaIV	GGNNCC	2 cut(s)	176, 334
NmeAIII	GCCGAG	1 cut(s)	305
NspI	RCATGY	2 cut(s)	279, 449
PaeI	GCATGC	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	619
PctI	GAATGC	2 cut(s)	22, 709
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	228, 472, 742, 751
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	640
PsiI	TTATAA	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	176, 334
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	231
PvuII	CAGCTG	2 cut(s)	75, 752
RsaI	GTAC	1 cut(s)	763
RsaNI	GTAC	1 cut(s)	762
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	227, 471, 741, 750
Sau3AI	GATC	3 cut(s)	163, 318, 375
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	32, 223
SduI	GDGCHC	2 cut(s)	298, 495
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	2 cut(s)	247, 728
SspMI	CTAG	4 cut(s)	48, 195, 351, 476
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	30, 221
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	1 cut(s)	766
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	1 cut(s)	166
TasI	AATT	2 cut(s)	247, 728
TatI	WGTACW	1 cut(s)	761
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	92, 562
TseI	GCWGC	4 cut(s)	226, 470, 740, 749
TspDTI	ATGAA	2 cut(s)	233, 534
TspRI	CASTG	2 cut(s)	92, 562
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	2 cut(s)	279, 449
XspI	CTAG	4 cut(s)	48, 195, 351, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.