Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

59126554 .. 59130102

Gene Structure 3549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG392400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGCTACAACAATCCCACTACTGGTTCTGGTAGTGGAACTGCTAGAGGGAGGTTTGAGTTTGGGAGGACACATGTGGTCAGGCCAAAAGGGAAACACCAAGCAACTATAGTTTGGCTACATGGCCTTGGTGATAAGGGCTCAAGTTGGTCCCAGCTCTTGGAAACCCTTCCTCTTCCAAATATCAAGTGGATTTGCCCTACTGCTCCTTCTCGGCCTGTAGCATTATTTGGTGGATTTCCTTGCACTGCTTGGTTTGACATGGGGGACATTTCAGAAGATGCTCCTGATGACATGGAGGGTTTAGATGCCTCAGCAGCGCATGTTGCAAATCTCTTGTCAACAGAGCCTGCTGATATAAAATTAGGTGTTGGAGGCTTCAGCATGGGTGCTGCAACTGCCCTCTACTCTGCCACATGCCGCGCTTTAGGGCAATATGGAAATGGAAACCCATATCCAGTTAACCTTAGTGCAATTGTTGGTCTAAGTGGCTGGCTGCCATGTTCGAGGACCTTAAGGAACCGGATGGAGGGGTCGCATGAGGCTGCAAGGCATGCAGCATCCTTGCCCATTTTGCTGTGTCATGGCTCAGGTGATGATGTGATTGCACATAAACATGGAGAGAAATCCGCACAGACCTTAAGTGCAGCTGGATTTCGAAATCTCATGTTTAGAACATACAATGGTCTGGGCCATTATACCATCCCTGAAGAAACCGATGAAGTTTGTGCTTGGCTGACTGCAAGTTTGGGGCTTGAGGGATCCCGATCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

258

Amino Acids

27.45

Weight (kDa)

6.35

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	25 - 246	8.9e-38	Phospholipase/Carboxylesterase
FSH1	PF03959	83 - 214	8.3e-06	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccII	CGCG	1 cut(s)	423
AciI	CCGC	2 cut(s)	421, 630
AclWI	GGATC	2 cut(s)	756, 769
AcuI	CTGAAG	2 cut(s)	364, 729
AfiI	CCNNNNNNNGG	3 cut(s)	23, 160, 529
AflII	CTTAAG	2 cut(s)	514, 640
AflIII	ACRYGT	1 cut(s)	73
AluBI	AGCT	3 cut(s)	6, 157, 650
AluI	AGCT	3 cut(s)	6, 157, 650
AlwI	GGATC	2 cut(s)	756, 769
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	83, 124, 215, 691
ApeKI	GCWGC	6 cut(s)	317, 392, 496, 545, 557, 647
ArsI	GACNNNNNNTTYG	4 cut(s)	323, 355, 730, 762
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	322, 425
AspS9I	GGNCC	3 cut(s)	150, 510, 691
AsuHPI	GGTGA	2 cut(s)	143, 605
AsuII	TTCGAA	1 cut(s)	658
AvaII	GGWCC	2 cut(s)	150, 510
BamHI	GGATCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	313
BbvI	GCAGC	6 cut(s)	329, 379, 483, 532, 569, 659
BccI	CCATC	2 cut(s)	520, 710
BfaI	CTAG	2 cut(s)	45, 775
BfmI	CTRYAG	2 cut(s)	108, 219
BfrI	CTTAAG	2 cut(s)	514, 640
BisI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
BlsI	GCNGC	7 cut(s)	319, 394, 422, 498, 547, 559, 649
Bme18I	GGWCC	2 cut(s)	150, 510
BmgT120I	GGNCC	3 cut(s)	150, 510, 691
BmiI	GGNNCC	3 cut(s)	152, 521, 763
BmsI	GCATC	3 cut(s)	271, 298, 569
Bpu10I	CCTNAGC	2 cut(s)	313, 589
Bpu14I	TTCGAA	1 cut(s)	658
BpuEI	CTTGAG	2 cut(s)	127, 776
BsaBI	GATNNNNATC	1 cut(s)	766
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 160, 529
Bse1I	ACTGG	2 cut(s)	28, 458
Bse8I	GATNNNNATC	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	531, 560, 702
BseJI	GATNNNNATC	1 cut(s)	766
BseLI	CCNNNNNNNGG	3 cut(s)	23, 160, 529
BseMII	CTCAG	2 cut(s)	327, 603
BseNI	ACTGG	2 cut(s)	28, 458
BseXI	GCAGC	6 cut(s)	329, 379, 483, 532, 569, 659
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	4 cut(s)	85, 126, 217, 693
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	2 cut(s)	136, 281
BslI	CCNNNNNNNGG	3 cut(s)	23, 160, 529
BsmFI	GGGAC	2 cut(s)	136, 281
BsnI	GGCC	4 cut(s)	85, 126, 217, 693
Bsp119I	TTCGAA	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	761, 767
BspACI	CCGC	2 cut(s)	421, 630
BspANI	GGCC	4 cut(s)	85, 126, 217, 693
BspCNI	CTCAG	2 cut(s)	326, 602
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	3 cut(s)	152, 521, 763
BspPI	GGATC	2 cut(s)	756, 769
BspT104I	TTCGAA	1 cut(s)	658
BspTI	CTTAAG	2 cut(s)	514, 640
BsrI	ACTGG	2 cut(s)	28, 458
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	761, 767
BssT1I	CCWWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	180
BstAFI	CTTAAG	2 cut(s)	514, 640
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	351, 494, 555
BstDEI	CTNAG	4 cut(s)	313, 467, 485, 589
BstF5I	GGATG	3 cut(s)	531, 560, 702
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	2 cut(s)	322, 425
BstKTI	GATC	2 cut(s)	764, 770
BstMBI	GATC	2 cut(s)	761, 767
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 326, 398, 554, 574
BstNSI	RCATGY	4 cut(s)	77, 326, 420, 557
BstSFI	CTRYAG	2 cut(s)	108, 219
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	6 cut(s)	329, 379, 483, 532, 569, 659
BstX2I	RGATCY	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	761
BsuRI	GGCC	4 cut(s)	85, 126, 217, 693
BtsCI	GGATG	3 cut(s)	531, 560, 702
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	351, 494, 555
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	2 cut(s)	322, 425
Cfr13I	GGNCC	3 cut(s)	150, 510, 691
DdeI	CTNAG	4 cut(s)	313, 467, 485, 589
DpnI	GATC	2 cut(s)	763, 769
DpnII	GATC	2 cut(s)	761, 767
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	150, 510
Eco57I	CTGAAG	2 cut(s)	364, 729
EcoO109I	RGGNCCY	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	127
FaqI	GGGAC	2 cut(s)	136, 281
Fnu4HI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
FokI	GGATG	3 cut(s)	538, 547, 689
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
FspBI	CTAG	2 cut(s)	45, 775
GlaI	GCGC	2 cut(s)	321, 424
GluI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	4 cut(s)	85, 126, 217, 693
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	2 cut(s)	322, 425
Hin6I	GCGC	2 cut(s)	320, 423
HinP1I	GCGC	2 cut(s)	320, 423
HincII	GTYRAC	2 cut(s)	342, 463
HindII	GTYRAC	2 cut(s)	342, 463
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	2 cut(s)	143, 605
Hpy166II	GTNNAC	2 cut(s)	342, 463
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	287, 765
Hpy8I	GTNNAC	2 cut(s)	342, 463
HpyAV	CCTTC	2 cut(s)	179, 219
HpyCH4V	TGCA	9 cut(s)	246, 329, 395, 473, 548, 557, 608, 647, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 326, 398, 554, 574
HpyF3I	CTNAG	4 cut(s)	313, 467, 485, 589
HspAI	GCGC	2 cut(s)	320, 423
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	761, 767
LmnI	GCTCC	2 cut(s)	211, 289
Lsp1109I	GCAGC	6 cut(s)	329, 379, 483, 532, 569, 659
LweI	GCATC	3 cut(s)	271, 298, 569
MaeI	CTAG	2 cut(s)	45, 775
MalI	GATC	2 cut(s)	763, 769
MboI	GATC	2 cut(s)	761, 767
MboII	GAAGA	3 cut(s)	167, 290, 722
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	2 cut(s)	362, 474
MmeI	TCCRAC	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	462, 515, 641
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	650
MspCI	CTTAAG	2 cut(s)	514, 640
MspI	CCGG	1 cut(s)	523
MunI	CAATTG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	5 cut(s)	317, 326, 398, 554, 574
NdeII	GATC	2 cut(s)	761, 767
NlaIV	GGNNCC	3 cut(s)	152, 521, 763
NmeAIII	GCCGAG	1 cut(s)	193
NspI	RCATGY	4 cut(s)	77, 326, 420, 557
NspV	TTCGAA	1 cut(s)	658
PaeI	GCATGC	1 cut(s)	557
PciI	ACATGT	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	7 cut(s)	319, 394, 422, 498, 547, 559, 649
PpuMI	RGGWCCY	1 cut(s)	510
PscI	ACATGT	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	152, 521, 763
PspPI	GGNCC	3 cut(s)	150, 510, 691
PspPPI	RGGWCCY	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	462, 515, 641
SatI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
Sau3AI	GATC	2 cut(s)	761, 767
Sau96I	GGNCC	3 cut(s)	150, 510, 691
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	9 cut(s)	8, 56, 159, 370, 468, 515, 595, 641, 652
SfaNI	GCATC	3 cut(s)	271, 298, 569
SfcI	CTRYAG	2 cut(s)	108, 219
SfuI	TTCGAA	1 cut(s)	658
SinI	GGWCC	2 cut(s)	150, 510
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	4 cut(s)	142, 514, 640, 755
SmoI	CTYRAG	4 cut(s)	142, 514, 640, 755
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	2 cut(s)	362, 474
SsiI	CCGC	2 cut(s)	421, 630
SspMI	CTAG	2 cut(s)	45, 775
StyI	CCWWGG	1 cut(s)	127
TaqI	TCGA	2 cut(s)	506, 658
TasI	AATT	2 cut(s)	362, 474
TauI	GCSGC	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	462, 515, 641
Tru9I	TTAA	3 cut(s)	462, 515, 641
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	6 cut(s)	317, 392, 496, 545, 557, 647
TspDTI	ATGAA	1 cut(s)	735
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	160
Vha464I	CTTAAG	2 cut(s)	514, 640
VpaK11BI	GGWCC	2 cut(s)	150, 510
XceI	RCATGY	4 cut(s)	77, 326, 420, 557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	45, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.