Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Forward (+)

10127399 .. 10132070

Gene Structure 4672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGCTACAATAATCCCACTACTGGTTCTGGTAGTGGAACTGCTAGAGGGAGGTTTGAGTTTGGAAGGACACATGTGGTCAGGCCAAAAGGGAAACACCAAGCAACTATAGTTTGGCTACATGGCCTTGGTGATAAGGGCTCAAGTTGGTCCCAGCTCTTGGAAACCCTTCCTCTTCCAAATATCAAGTGGATTTGCCCTACTGCTCCTTCTCGGCCTGTAGCATTATTTGGTGGATTTCCGTGCACTGCTTGGTTTGACGTGGGGGACATTTCAGAAGATGCTCCTGATGACATGGAGGGGTTAGATGCCTCAGCAGCGCATGTTGCAAATCTCTTGTCAACAGAGCCTGCTGATATAAAACTAGGTGTTGGAGGCTTCAGTATGGGTGCTGCAACTGCCCTCTACTCTGCCACGTGCCGCGCGTTAGGGCAATATGGAAATGGAAACCCATATCCAGTTAACCTTAGTGCAATTGTTTGTCTAAGTGGCTGGCTGCCATGTTCAAGGACCTTAAGGAACCGGATGGAGGGTTCCCATGAGGCTGCAAGGCATGCAGCATCCTTGCCCATTTTGCTGTGTCATGGCTCAGGTGATGATGTGGTTGCACATAAACATGGAGAGAAATCCGCACAGACCTTAAGTGCAGCTGGATTTCGAAATCTCATGTTTAGAACATACAATGGTCTGGGCCATTATACCATCCCTGAAGAAACCGATGAAGTTTGTGCTTGGCTGACTGCAAGTTTGGGGCTTGAGGGATCCCGATCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

258

Amino Acids

27.45

Weight (kDa)

6.35

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	25 - 246	1.4e-37	Phospholipase/Carboxylesterase
FSH1	PF03959	83 - 215	1.2e-06	Serine hydrolase (FSH1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccII	CGCG	2 cut(s)	423, 425
AciI	CCGC	2 cut(s)	421, 630
AclWI	GGATC	2 cut(s)	756, 769
AcuI	CTGAAG	2 cut(s)	364, 729
AcvI	CACGTG	1 cut(s)	417
AfiI	CCNNNNNNNGG	3 cut(s)	23, 160, 529
AflII	CTTAAG	2 cut(s)	514, 640
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	507
AjiI	CACGTC	1 cut(s)	262
AloI	GAACNNNNNNTCC	2 cut(s)	517, 549
AluBI	AGCT	3 cut(s)	6, 157, 650
AluI	AGCT	3 cut(s)	6, 157, 650
Alw21I	GWGCWC	1 cut(s)	248
Alw44I	GTGCAC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	756, 769
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	83, 124, 215, 691
ApaLI	GTGCAC	1 cut(s)	244
ApeKI	GCWGC	6 cut(s)	317, 392, 496, 545, 557, 647
ArsI	GACNNNNNNTTYG	4 cut(s)	323, 355, 730, 762
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	322, 425
AspS9I	GGNCC	3 cut(s)	150, 510, 691
AsuHPI	GGTGA	2 cut(s)	143, 605
AsuII	TTCGAA	1 cut(s)	658
AvaII	GGWCC	2 cut(s)	150, 510
BaeGI	GKGCMC	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	143
BbrPI	CACGTG	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	313
BbvI	GCAGC	6 cut(s)	329, 379, 483, 532, 569, 659
BccI	CCATC	2 cut(s)	520, 710
BfaI	CTAG	3 cut(s)	45, 365, 775
BfmI	CTRYAG	2 cut(s)	108, 219
BfrI	CTTAAG	2 cut(s)	514, 640
BisI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
BlsI	GCNGC	7 cut(s)	319, 394, 422, 498, 547, 559, 649
Bme18I	GGWCC	2 cut(s)	150, 510
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	150, 510, 691
BmiI	GGNNCC	4 cut(s)	152, 521, 535, 763
BmsI	GCATC	3 cut(s)	271, 298, 569
Bpu10I	CCTNAGC	2 cut(s)	313, 589
Bpu14I	TTCGAA	1 cut(s)	658
BpuEI	CTTGAG	2 cut(s)	127, 776
BsaAI	YACGTR	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	766
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 160, 529
Bse1I	ACTGG	2 cut(s)	28, 458
Bse8I	GATNNNNATC	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	531, 560, 702
BseJI	GATNNNNATC	1 cut(s)	766
BseLI	CCNNNNNNNGG	3 cut(s)	23, 160, 529
BseMII	CTCAG	2 cut(s)	327, 603
BseNI	ACTGG	2 cut(s)	28, 458
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	6 cut(s)	329, 379, 483, 532, 569, 659
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	2 cut(s)	423, 425
BshFI	GGCC	4 cut(s)	85, 126, 217, 693
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	2 cut(s)	136, 281
BslI	CCNNNNNNNGG	3 cut(s)	23, 160, 529
BsmFI	GGGAC	2 cut(s)	136, 281
BsnI	GGCC	4 cut(s)	85, 126, 217, 693
Bsp119I	TTCGAA	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	143, 248
Bsp143I	GATC	2 cut(s)	761, 767
BspACI	CCGC	2 cut(s)	421, 630
BspANI	GGCC	4 cut(s)	85, 126, 217, 693
BspCNI	CTCAG	2 cut(s)	326, 602
BspFNI	CGCG	2 cut(s)	423, 425
BspLI	GGNNCC	4 cut(s)	152, 521, 535, 763
BspPI	GGATC	2 cut(s)	756, 769
BspT104I	TTCGAA	1 cut(s)	658
BspTI	CTTAAG	2 cut(s)	514, 640
BsrI	ACTGG	2 cut(s)	28, 458
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	761, 767
BssT1I	CCWWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	180
BstAFI	CTTAAG	2 cut(s)	514, 640
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	351, 494, 555
BstDEI	CTNAG	4 cut(s)	313, 467, 485, 589
BstF5I	GGATG	3 cut(s)	531, 560, 702
BstFNI	CGCG	2 cut(s)	423, 425
BstHHI	GCGC	2 cut(s)	322, 425
BstKTI	GATC	2 cut(s)	764, 770
BstMBI	GATC	2 cut(s)	761, 767
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 326, 398, 554, 574
BstNSI	RCATGY	3 cut(s)	77, 326, 557
BstSFI	CTRYAG	2 cut(s)	108, 219
BstSLI	GKGCMC	1 cut(s)	248
BstUI	CGCG	2 cut(s)	423, 425
BstV1I	GCAGC	6 cut(s)	329, 379, 483, 532, 569, 659
BstX2I	RGATCY	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	761
BsuRI	GGCC	4 cut(s)	85, 126, 217, 693
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	531, 560, 702
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	351, 494, 555
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	2 cut(s)	322, 425
Cfr13I	GGNCC	3 cut(s)	150, 510, 691
DdeI	CTNAG	4 cut(s)	313, 467, 485, 589
DpnI	GATC	2 cut(s)	763, 769
DpnII	GATC	2 cut(s)	761, 767
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	150, 510
Eco57I	CTGAAG	2 cut(s)	364, 729
Eco72I	CACGTG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	127
FaqI	GGGAC	2 cut(s)	136, 281
Fnu4HI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
FokI	GGATG	3 cut(s)	538, 547, 689
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
FspBI	CTAG	3 cut(s)	45, 365, 775
GlaI	GCGC	2 cut(s)	321, 424
GluI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	4 cut(s)	85, 126, 217, 693
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	2 cut(s)	322, 425
Hin6I	GCGC	2 cut(s)	320, 423
HinP1I	GCGC	2 cut(s)	320, 423
HincII	GTYRAC	2 cut(s)	342, 463
HindII	GTYRAC	2 cut(s)	342, 463
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	2 cut(s)	143, 605
Hpy166II	GTNNAC	3 cut(s)	246, 342, 463
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	287, 765
Hpy8I	GTNNAC	3 cut(s)	246, 342, 463
HpyAV	CCTTC	3 cut(s)	60, 179, 219
HpyCH4IV	ACGT	2 cut(s)	261, 416
HpyCH4V	TGCA	9 cut(s)	246, 329, 395, 473, 548, 557, 608, 647, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 326, 398, 554, 574
HpyF3I	CTNAG	4 cut(s)	313, 467, 485, 589
HpySE526I	ACGT	2 cut(s)	261, 416
HspAI	GCGC	2 cut(s)	320, 423
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	761, 767
LmnI	GCTCC	2 cut(s)	211, 289
Lsp1109I	GCAGC	6 cut(s)	329, 379, 483, 532, 569, 659
LweI	GCATC	3 cut(s)	271, 298, 569
MaeI	CTAG	3 cut(s)	45, 365, 775
MaeII	ACGT	2 cut(s)	261, 416
MalI	GATC	2 cut(s)	763, 769
MboI	GATC	2 cut(s)	761, 767
MboII	GAAGA	3 cut(s)	167, 290, 722
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	2 cut(s)	143, 248
MluCI	AATT	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	462, 515, 641
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	650
MspCI	CTTAAG	2 cut(s)	514, 640
MspI	CCGG	1 cut(s)	523
MunI	CAATTG	1 cut(s)	474
MvnI	CGCG	2 cut(s)	423, 425
MwoI	GCNNNNNNNGC	5 cut(s)	317, 326, 398, 554, 574
NdeII	GATC	2 cut(s)	761, 767
NlaIV	GGNNCC	4 cut(s)	152, 521, 535, 763
NmeAIII	GCCGAG	1 cut(s)	193
NspI	RCATGY	3 cut(s)	77, 326, 557
NspV	TTCGAA	1 cut(s)	658
PaeI	GCATGC	1 cut(s)	557
PciI	ACATGT	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	7 cut(s)	319, 394, 422, 498, 547, 559, 649
PmaCI	CACGTG	1 cut(s)	417
PmlI	CACGTG	1 cut(s)	417
Ppu21I	YACGTR	1 cut(s)	417
PpuMI	RGGWCCY	1 cut(s)	510
PscI	ACATGT	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	510
PspCI	CACGTG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	4 cut(s)	152, 521, 535, 763
PspPI	GGNCC	3 cut(s)	150, 510, 691
PspPPI	RGGWCCY	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	462, 515, 641
SatI	GCNGC	7 cut(s)	318, 393, 421, 497, 546, 558, 648
Sau3AI	GATC	2 cut(s)	761, 767
Sau96I	GGNCC	3 cut(s)	150, 510, 691
SduI	GDGCHC	2 cut(s)	143, 248
SfaNI	GCATC	3 cut(s)	271, 298, 569
SfcI	CTRYAG	2 cut(s)	108, 219
SfuI	TTCGAA	1 cut(s)	658
SinI	GGWCC	2 cut(s)	150, 510
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	4 cut(s)	142, 514, 640, 755
SmoI	CTYRAG	4 cut(s)	142, 514, 640, 755
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	1 cut(s)	474
SsiI	CCGC	2 cut(s)	421, 630
SspMI	CTAG	3 cut(s)	45, 365, 775
StyI	CCWWGG	1 cut(s)	127
TaiI	ACGT	2 cut(s)	264, 419
TaqI	TCGA	1 cut(s)	658
TasI	AATT	1 cut(s)	474
TauI	GCSGC	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	462, 515, 641
Tru9I	TTAA	3 cut(s)	462, 515, 641
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	6 cut(s)	317, 392, 496, 545, 557, 647
TspDTI	ATGAA	1 cut(s)	735
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	160
Vha464I	CTTAAG	2 cut(s)	514, 640
VneI	GTGCAC	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	150, 510
XceI	RCATGY	3 cut(s)	77, 326, 557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	3 cut(s)	45, 365, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.