Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

2045205 .. 2048995

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03850.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGTTCTGTGCTCCTTCATCTTTACATTTTCTGTAGTAGGAGTGTGGTTGGTGCTATTTTCCCAGAGGGTGCCTAATATGAGCTTTACGTCTCCATCTGTCGGTTCTGGTGGTAGAACTGTTAGAAGGGCATTTGAGTTTGGAAGAACCTATGTAGTCCGACCTAAAGGCAAACACCAGGCCACTGTAGTTTGGCTACATGGCCTTGGTGACAATGGCTCAAGCTGGTCCCAGCTCTTGGAGTCCCTCCCTCTTCCAAATATTAAATGGATATGTCCAACCGCTCCTACTCAACCAATTTCAGTTTTTGGTGGTTTTCCTTCCACTGCTTGGTTTGATGTTGGAGAACTTTCAGAAGATGCTCCAGATGATATAGAGGGCTTGGATGCTTCAGCAGCACATGTAGCTAATTTGCTGTCAACAGAACCAGATAACATTAAGCTTGGGGTTGGAGGTTTTAGTATGGGTGCAGCTACAGCTCTATACTCAGCCACATGCTTTGCTATAAAGAAATACGGGGATGGTACTCCATACCCGTCCAATCTGAGTGCAGTTGTTGGACTCAGTGGATGGCTTCCATGTTCCAAGACCTTGAGTAAGAAGTTTGAAGAAGCAAGTGAAGCTGCAAGGCGTGCTGCCTCCTTTCCACTTTTGTTATGCCATGGAAAAGGTGATGATGTGGTACCGTATAAGTTCGGTGAGAAATCTTCACAAGCTCTGAGTTCAACTGGATTTCAGGAAGTAACGTTCAAATCATACAATGGGCTTGGTCATTACACAATTCCTGAAGAGATGGATGAGGTTTGTACTTGGCTAAGTTCAAAGTTGGGGCTTGAAGGAACTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

284

Amino Acids

30.33

Weight (kDa)

5.76

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	25 - 169	1.3e-26	Phospholipase/Carboxylesterase
Abhydrolase_6	PF12697	37 - 231	1.4e-06	Alpha/beta hydrolase family
Abhydrolase_2	PF02230	203 - 275	1.7e-09	Phospholipase/Carboxylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	682
AccB1I	GGYRCC	2 cut(s)	70, 682
AccB7I	CCANNNNNTGG	2 cut(s)	238, 330
AccBSI	CCGCTC	1 cut(s)	284
AciI	CCGC	1 cut(s)	282
AclI	AACGTT	1 cut(s)	746
AcuI	CTGAAG	2 cut(s)	375, 807
AfaI	GTAC	3 cut(s)	526, 684, 808
AfiI	CCNNNNNNNGG	3 cut(s)	101, 238, 330
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	5 cut(s)	608, 726, 751, 822, 836
AjnI	CCWGG	1 cut(s)	177
AloI	GAACNNNNNNTCC	2 cut(s)	731, 763
AluBI	AGCT	9 cut(s)	84, 225, 235, 407, 442, 473, 479, 623, 716
AluI	AGCT	9 cut(s)	84, 225, 235, 407, 442, 473, 479, 623, 716
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	2 cut(s)	180, 202
ApeKI	GCWGC	4 cut(s)	395, 470, 623, 635
Asp700I	GAANNNNTTC	1 cut(s)	844
Asp718I	GGTACC	1 cut(s)	682
AspS9I	GGNCC	1 cut(s)	228
AsuHPI	GGTGA	3 cut(s)	221, 683, 710
AvaII	GGWCC	1 cut(s)	228
BanI	GGYRCC	2 cut(s)	70, 682
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	407, 482, 610, 622
BccI	CCATC	4 cut(s)	103, 515, 564, 787
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	96
BfmI	CTRYAG	3 cut(s)	33, 186, 474
BisI	GCNGC	4 cut(s)	396, 471, 624, 636
BlsI	GCNGC	4 cut(s)	397, 472, 625, 637
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	3 cut(s)	72, 230, 684
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	349, 376
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	205, 613
BsaJI	CCNNGG	2 cut(s)	205, 661
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 238, 330
Bse1I	ACTGG	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	205, 661
BseGI	GGATG	4 cut(s)	391, 526, 575, 802
BseLI	CCNNNNNNNGG	3 cut(s)	101, 238, 330
BseMII	CTCAG	4 cut(s)	501, 536, 577, 710
BseNI	ACTGG	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	407, 482, 610, 622
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	2 cut(s)	489, 570
BshFI	GGCC	2 cut(s)	182, 204
BshNI	GGYRCC	2 cut(s)	70, 682
BsiHKAI	GWGCWC	1 cut(s)	14
BslFI	GGGAC	2 cut(s)	214, 229
BslI	CCNNNNNNNGG	3 cut(s)	101, 238, 330
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	214, 229
BsnI	GGCC	2 cut(s)	182, 204
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	661
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	2 cut(s)	182, 204
BspCNI	CTCAG	4 cut(s)	500, 537, 576, 711
BspLI	GGNNCC	3 cut(s)	72, 230, 684
BspT107I	GGYRCC	2 cut(s)	70, 682
BsrBI	CCGCTC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	733
BssECI	CCNNGG	2 cut(s)	205, 661
BssT1I	CCWWGG	2 cut(s)	205, 661
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	121, 187, 687
Bst6I	CTCTTC	2 cut(s)	258, 783
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	5 cut(s)	487, 545, 563, 719, 815
BstDSI	CCRYGG	1 cut(s)	661
BstF5I	GGATG	4 cut(s)	391, 526, 575, 802
BstMAI	GTCTC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	5 cut(s)	395, 404, 476, 620, 632
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	404, 498
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	3 cut(s)	33, 186, 474
BstV1I	GCAGC	4 cut(s)	407, 482, 610, 622
BsuRI	GGCC	2 cut(s)	182, 204
BtgI	CCRYGG	1 cut(s)	661
BtsCI	GGATG	4 cut(s)	391, 526, 575, 802
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	3 cut(s)	183, 324, 571
Cac8I	GCNNGC	1 cut(s)	633
Cfr13I	GGNCC	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	525, 683, 807
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	5 cut(s)	200, 401, 495, 579, 662
CviQI	GTAC	3 cut(s)	525, 683, 807
DdeI	CTNAG	5 cut(s)	487, 545, 563, 719, 815
Eam1104I	CTCTTC	2 cut(s)	258, 783
EarI	CTCTTC	2 cut(s)	258, 783
Eco130I	CCWWGG	2 cut(s)	205, 661
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	375, 807
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	205, 661
ErhI	CCWWGG	2 cut(s)	205, 661
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	5 cut(s)	203, 404, 498, 582, 665
FaqI	GGGAC	2 cut(s)	214, 229
FatI	CATG	5 cut(s)	199, 400, 494, 578, 661
Fnu4HI	GCNGC	4 cut(s)	396, 471, 624, 636
FokI	GGATG	4 cut(s)	398, 533, 582, 809
Fsp4HI	GCNGC	4 cut(s)	396, 471, 624, 636
GluI	GCNGC	4 cut(s)	396, 471, 624, 636
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	182, 204
Hin1II	CATG	5 cut(s)	203, 404, 498, 582, 665
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	2 cut(s)	242, 561
HphI	GGTGA	3 cut(s)	221, 683, 710
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	161, 355, 546, 720
Hpy188III	TCNNGA	3 cut(s)	365, 737, 785
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	4 cut(s)	25, 120, 330, 830
HpyCH4III	ACNGT	3 cut(s)	121, 187, 687
HpyCH4IV	ACGT	2 cut(s)	89, 746
HpyCH4V	TGCA	3 cut(s)	470, 551, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	395, 404, 476, 620, 632
HpyF3I	CTNAG	5 cut(s)	487, 545, 563, 719, 815
HpySE526I	ACGT	2 cut(s)	89, 746
Hsp92II	CATG	5 cut(s)	203, 404, 498, 582, 665
KpnI	GGTACC	1 cut(s)	686
LmnI	GCTCC	3 cut(s)	17, 289, 367
Lsp1109I	GCAGC	4 cut(s)	407, 482, 610, 622
LweI	GCATC	2 cut(s)	349, 376
MaeII	ACGT	2 cut(s)	89, 746
MaeIII	GTNAC	2 cut(s)	209, 742
MbiI	CCGCTC	1 cut(s)	284
MboII	GAAGA	7 cut(s)	156, 245, 368, 620, 699, 800, 837
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	3 cut(s)	297, 409, 780
MlyI	GAGTC	2 cut(s)	251, 555
MmeI	TCCRAC	5 cut(s)	184, 302, 322, 430, 538
MnlI	CCTC	7 cut(s)	60, 257, 261, 370, 446, 649, 793
MroXI	GAANNNNTTC	1 cut(s)	844
MseI	TTAA	2 cut(s)	264, 438
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	5 cut(s)	395, 404, 476, 620, 632
NcoI	CCATGG	1 cut(s)	661
NlaIII	CATG	5 cut(s)	203, 404, 498, 582, 665
NlaIV	GGNNCC	3 cut(s)	72, 230, 684
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	2 cut(s)	404, 498
PciI	ACATGT	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	844
PflMI	CCANNNNNTGG	2 cut(s)	238, 330
PkrI	GCNGC	4 cut(s)	397, 472, 625, 637
PleI	GAGTC	2 cut(s)	250, 555
PpsI	GAGTC	2 cut(s)	250, 555
PscI	ACATGT	1 cut(s)	400
Psp1406I	AACGTT	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	72, 230, 684
PspPI	GGNCC	1 cut(s)	228
RsaI	GTAC	3 cut(s)	526, 684, 808
RsaNI	GTAC	3 cut(s)	525, 683, 807
SaqAI	TTAA	2 cut(s)	264, 438
SatI	GCNGC	4 cut(s)	396, 471, 624, 636
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	2 cut(s)	251, 555
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	349, 376
SfcI	CTRYAG	3 cut(s)	33, 186, 474
SinI	GGWCC	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	220, 592
SmoI	CTYRAG	2 cut(s)	220, 592
Sse9I	AATT	3 cut(s)	297, 409, 780
SsiI	CCGC	1 cut(s)	282
SspI	AATATT	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	2 cut(s)	205, 661
TaaI	ACNGT	3 cut(s)	121, 187, 687
TaiI	ACGT	2 cut(s)	92, 749
TasI	AATT	3 cut(s)	297, 409, 780
TatI	WGTACW	1 cut(s)	806
Tru1I	TTAA	2 cut(s)	264, 438
Tru9I	TTAA	2 cut(s)	264, 438
TscAI	CASTG	3 cut(s)	190, 331, 571
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	4 cut(s)	395, 470, 623, 635
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	7, 837
TspRI	CASTG	3 cut(s)	190, 331, 571
Van91I	CCANNNNNTGG	2 cut(s)	238, 330
VpaK11BI	GGWCC	1 cut(s)	228
XceI	RCATGY	2 cut(s)	404, 498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.