Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001123

Physical Location & Seq

Genomic Coordinates Reverse (-)

1947051 .. 1949395

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGCTTTACTGGTCCCTCTGTTGGTTCTGGTGGTAGAACTGCTAGAAGGGCGTTTGAGTTTGGAAGAACCTATGTAGTCAGACCTAAGGGCAAACACCAGGCCACTGTAGTTTGGTTACATGGCCTCGGCGATAATGGTTCAAGCTGGTCACAGCTCTTGGAATCCCTCCCACTTCCAAATATTAAGTGGATTTGTCCAACTGCTCCTACTCAACCAATTGCGATTTTTGGTGGCTTTCCCTCCACTGCTTGGTTTAATGTTGGAGAACTTTCAGAAGATGCTCCGGATGATGTAGAGGGTTTGGATGCTTCTGCAGCACATGTTGCGAATTTGTTATCAACAGAGCCTGATGACATTAAACTTGGAGTTGGAGGGTTTAGTATGGGTGCAGCTACTGCCCTATACTCTGCGACCTGCTTTGTTACAAGAAAATATGGGAATGGTAATCAATACCCATGCAATCTGAGTGCGGTTGTTGGACTAAGCGGATGGCTTCCATGTTCCAAGACCTTGAGTAAGAAGTTAGAAGAAGTAGATGAAGCTGCAAGGCGTGCTGCCTCCATTCCGCTTTTGTTATGTCATGGGAAAAGTGATAATGTGGTTTCTTACAAGTTTGGTGAGAAATCGTCGCAGTCCTTAAGGTCAAATGGCTTTCAGGACGTGACATTCAAATCCTATAACGCGCTTGGTCATTATACAATCCCGGAAGAGATGGACGAGGTTTGTGCTTGGCTAAGGTCAAAACTGGGGCTTGACGGGACTTCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0022008 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0031175 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0035601 GO:0036211 GO:0040011 GO:0042157 GO:0042159 GO:0042221 GO:0042330 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050896 GO:0052689 GO:0061564 GO:0071704 GO:0071840 GO:0097485 GO:0098599 GO:0098732 GO:0098734 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

258

Amino Acids

27.52

Weight (kDa)

6.21

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20060 AT5G20060 AT5G20060 AT5G20060
fragaria_vesca	FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_1g03850 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580 FvH4_2g29580
malus_domestica	MD02G1036900.v1.1 MD08G1145500.v1.1 MD15G1121100.v1.1 MD15G1177000.v1.1
prunus_persica	Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.1G473700_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1 Prupe.7G238500_v2.0.a1
pyrus_communis	pycom02g03030 pycom08g12260 pycom15g10930 pycom15g15850
rosa_chinensis	RchiOBHm_Chr2g0089241 RchiOBHm_Chr4g0431191 RchiOBHm_Chr4g0445391 RchiOBHm_Chr6g0298561
rosa_laevigata	RLG00000011504 RLG00000023837
rosa_multiflora	Rmu_co7984268.1_g000001 Rmu_co8384817.1_g000001 Rmu_sc0004500.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152110 Rroxscaffold_7G00169540
rosa_rugosa	Rorug01G0488600 Rorug04G0248900 Rorug04G0249000 Rorug06G0281000
rosa_samantha	Rh2BG043100 Rh2BG095700 Rh2CG044600 Rh2CG097600 Rh2DG043400 Rh4AG305000 Rh4CG328700 Rh6AG392400 Rh6BG400300 Rh6CG406200 Rh6DG392900
rosa_wichuraiana	Rw2G003870 Rw6G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	252
AccII	CGCG	1 cut(s)	686
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	3 cut(s)	473, 489, 569
AcsI	RAATTY	1 cut(s)	331
AfiI	CCNNNNNNNGG	2 cut(s)	23, 252
AflII	CTTAAG	1 cut(s)	640
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	144, 673
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	5 cut(s)	6, 147, 157, 395, 545
AluI	AGCT	5 cut(s)	6, 147, 157, 395, 545
AlwNI	CAGNNNCTG	2 cut(s)	350, 398
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	2 cut(s)	102, 124
ApeKI	GCWGC	4 cut(s)	317, 392, 545, 557
ApoI	RAATTY	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	14
AxyI	CCTNAGG	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	329, 404, 532, 544
BccI	CCATC	2 cut(s)	486, 709
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	707
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	2 cut(s)	108, 315
BfrI	CTTAAG	1 cut(s)	640
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	4 cut(s)	318, 393, 546, 558
BlsI	GCNGC	4 cut(s)	319, 394, 547, 559
Bme1390I	CCNGG	2 cut(s)	101, 707
Bme18I	GGWCC	1 cut(s)	14
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	101, 707
BmrI	ACTGGG	1 cut(s)	758
BmsI	GCATC	2 cut(s)	271, 298
BmuI	ACTGGG	1 cut(s)	758
Bpu10I	CCTNAGC	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	535
BpuMI	CCSGG	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 252
Bse1I	ACTGG	2 cut(s)	16, 753
Bse21I	CCTNAGG	1 cut(s)	87
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	295, 313, 497
BseLI	CCNNNNNNNGG	2 cut(s)	23, 252
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	2 cut(s)	16, 753
BseXI	GCAGC	4 cut(s)	329, 404, 532, 544
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	686
BshFI	GGCC	2 cut(s)	104, 126
BsiSI	CCGG	2 cut(s)	287, 707
BslI	CCNNNNNNNGG	2 cut(s)	23, 252
BsnI	GGCC	2 cut(s)	104, 126
Bsp13I	TCCGGA	1 cut(s)	286
BspACI	CCGC	3 cut(s)	473, 489, 569
BspANI	GGCC	2 cut(s)	104, 126
BspCNI	CTCAG	1 cut(s)	459
BspEI	TCCGGA	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	686
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	16, 753
BssECI	CCNNGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	705
BstAFI	CTTAAG	1 cut(s)	640
BstAPI	GCANNNNNTGC	3 cut(s)	326, 398, 554
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	4 cut(s)	87, 467, 485, 737
BstF5I	GGATG	3 cut(s)	295, 313, 497
BstFNI	CGCG	1 cut(s)	686
BstHHI	GCGC	1 cut(s)	688
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 317, 326, 398, 554
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	99, 705
BstSFI	CTRYAG	2 cut(s)	108, 315
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	4 cut(s)	329, 404, 532, 544
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	104, 126
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	3 cut(s)	295, 313, 497
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	105, 246
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	555
CaiI	CAGNNNCTG	2 cut(s)	350, 398
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	5 cut(s)	122, 323, 459, 501, 584
DdeI	CTNAG	4 cut(s)	87, 467, 485, 737
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	125, 326, 462, 504, 587
FatI	CATG	5 cut(s)	121, 322, 458, 500, 583
Fnu4HI	GCNGC	4 cut(s)	318, 393, 546, 558
FokI	GGATG	3 cut(s)	302, 320, 504
Fsp4HI	GCNGC	4 cut(s)	318, 393, 546, 558
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	4 cut(s)	318, 393, 546, 558
HaeIII	GGCC	2 cut(s)	104, 126
HapII	CCGG	2 cut(s)	287, 707
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	5 cut(s)	125, 326, 462, 504, 587
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	287, 707
HphI	GGTGA	1 cut(s)	632
Hpy188I	TCNGA	3 cut(s)	83, 277, 468
Hpy188III	TCNNGA	2 cut(s)	287, 659
Hpy99I	CGWCG	1 cut(s)	634
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	4 cut(s)	317, 392, 462, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 317, 326, 398, 554
HpyF3I	CTNAG	4 cut(s)	87, 467, 485, 737
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	5 cut(s)	125, 326, 462, 504, 587
HspAI	GCGC	1 cut(s)	686
Kpn2I	TCCGGA	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	211, 289
Lsp1109I	GCAGC	4 cut(s)	329, 404, 532, 544
LweI	GCATC	2 cut(s)	271, 298
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	4 cut(s)	117, 150, 424, 664
MboII	GAAGA	5 cut(s)	78, 290, 542, 722, 759
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	2 cut(s)	219, 331
MmeI	TCCRAC	4 cut(s)	224, 244, 352, 460
MnlI	CCTC	8 cut(s)	28, 137, 179, 253, 292, 368, 571, 715
MroI	TCCGGA	1 cut(s)	286
MseI	TTAA	4 cut(s)	186, 258, 360, 641
MspCI	CTTAAG	1 cut(s)	640
MspI	CCGG	2 cut(s)	287, 707
MspR9I	CCNGG	2 cut(s)	101, 707
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	5 cut(s)	50, 317, 326, 398, 554
NciI	CCSGG	1 cut(s)	707
NlaIII	CATG	5 cut(s)	125, 326, 462, 504, 587
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	150, 664
NspI	RCATGY	1 cut(s)	326
PciI	ACATGT	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	252
PfoI	TCCNGGA	1 cut(s)	705
PkrI	GCNGC	4 cut(s)	319, 394, 547, 559
PscI	ACATGT	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	2 cut(s)	350, 398
SaqAI	TTAA	4 cut(s)	186, 258, 360, 641
SatI	GCNGC	4 cut(s)	318, 393, 546, 558
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	101, 707
SfaNI	GCATC	2 cut(s)	271, 298
SfcI	CTRYAG	2 cut(s)	108, 315
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	514, 640
SmoI	CTYRAG	2 cut(s)	514, 640
Sse9I	AATT	2 cut(s)	219, 331
SsiI	CCGC	3 cut(s)	473, 489, 569
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	99, 705
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	666
TasI	AATT	2 cut(s)	219, 331
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	4 cut(s)	186, 258, 360, 641
Tru9I	TTAA	4 cut(s)	186, 258, 360, 641
TscAI	CASTG	2 cut(s)	112, 253
TseFI	GTSAC	2 cut(s)	150, 664
TseI	GCWGC	4 cut(s)	317, 392, 545, 557
Tsp45I	GTSAC	2 cut(s)	150, 664
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	2 cut(s)	112, 253
Van91I	CCANNNNNTGG	1 cut(s)	252
Vha464I	CTTAAG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.