RLG00000023837

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001123
Physical Location & Seq
Reverse (-)
29004783 .. 29010590
5808 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023837

Sequence Viewer

Length: 513 bp
ATGTCTAAGGTCTTGAGCCAAGCCGATATTCAGGCTCCGTCTCATGCCCATCCAACCGATTTCTTAAGCCTTGCTGTGGTTCCTGGATCACCTAGGCCTATAGGTGCGGTTGAGCTGGTTCCAGCTCTGGAAACTCTCCCCCTTCCAAATGTAAGAATGAATACATCAACTCTATTGGAAGTTGAATGTTCTCATGTTAGCCATACTTATAATATTGTGATGGAGATTAAATGGATTTGTCCAACCGCTCCTATTGAACCAATTACTTCCAAGTGTCCAACCCGTCTCGGCGTGAGGCTTCTCTGGTCTTTCAAGCCCCACCCAGCCCCCATCGCCGAGCTCCTTGCCCAGCAACCTGCAACTAGCAAACCCGTCGCCGATCTCCGATCTCCGCCTCCAGCCCTCCAGGGAATCTCTGGTCTTTCAAGCCCCACCCAGCCCCCATTGCCGAGCTCCTTGCCCAGCAACCTGCAACTAGCAAACCCGTCGCCGATCTCCGATCTCCACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.11

Weight (kDa)

6.57

Isoelectric Point (pI)

67.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
Acc36I ACCTGC 2 cut(s) 364, 477
AccBSI CCGCTC 1 cut(s) 248
AciI CCGC 3 cut(s) 107, 246, 392
AclWI GGATC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 76
AflII CTTAAG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 185, 257, 313, 426
AjnI CCWGG 2 cut(s) 82, 405
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 4 cut(s) 115, 125, 340, 453
AluI AGCT 4 cut(s) 115, 125, 340, 453
Alw21I GWGCWC 2 cut(s) 342, 455
Alw26I GTCTC 2 cut(s) 45, 290
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 95
AspA2I CCTAGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 81
AvrII CCTAGG 1 cut(s) 92
BanII GRGCYC 2 cut(s) 342, 455
Bbv12I GWGCWC 2 cut(s) 342, 455
BccI CCATC 3 cut(s) 57, 214, 338
BcgI CGANNNNNNTGC 8 cut(s) 326, 355, 360, 389, 439, 468, 473, 502
BciT130I CCWGG 2 cut(s) 84, 407
BcoDI GTCTC 2 cut(s) 45, 290
BfaI CTAG 4 cut(s) 93, 363, 476, 511
BfmI CTRYAG 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 64
BfuAI ACCTGC 2 cut(s) 364, 477
BlnI CCTAGG 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 84, 407
BmiI GGNNCC 3 cut(s) 36, 81, 120
BmrFI CCNGG 2 cut(s) 84, 407
BpmI CTGGAG 2 cut(s) 381, 389
BpuEI CTTGAG 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 92, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 443
BseBI CCWGG 2 cut(s) 84, 407
BseDI CCNNGG 2 cut(s) 92, 406
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 443
BseYI CCCAGC 4 cut(s) 322, 348, 435, 461
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 2 cut(s) 342, 455
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 45, 290
BsmBI CGTCTC 2 cut(s) 45, 290
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 342, 455
Bsp143I GATC 5 cut(s) 86, 379, 386, 492, 499
BspACI CCGC 3 cut(s) 107, 246, 392
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 36, 81, 120
BspMI ACCTGC 2 cut(s) 364, 477
BspPI GGATC 1 cut(s) 94
BspTI CTTAAG 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 443
BssECI CCNNGG 2 cut(s) 92, 406
BssMI GATC 5 cut(s) 86, 379, 386, 492, 499
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 84, 407
BstAFI CTTAAG 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 5 cut(s) 89, 382, 389, 495, 502
BstMAI GTCTC 2 cut(s) 45, 290
BstMBI GATC 5 cut(s) 86, 379, 386, 492, 499
BstMWI GCNNNNNNNGC 2 cut(s) 332, 445
BstNI CCWGG 2 cut(s) 84, 407
BstSCI CCNGG 2 cut(s) 82, 405
BstSFI CTRYAG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 49
BveI ACCTGC 2 cut(s) 364, 477
CviAII CATG 2 cut(s) 44, 194
DdeI CTNAG 1 cut(s) 6
DpnI GATC 5 cut(s) 88, 381, 388, 494, 501
DpnII GATC 5 cut(s) 86, 379, 386, 492, 499
EciI GGCGGA 1 cut(s) 381
Ecl136II GAGCTC 2 cut(s) 340, 453
Eco130I CCWWGG 1 cut(s) 92
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 2 cut(s) 342, 455
Eco53kI GAGCTC 2 cut(s) 340, 453
EcoICRI GAGCTC 2 cut(s) 340, 453
EcoRII CCWGG 2 cut(s) 82, 405
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 2 cut(s) 342, 455
ErhI CCWWGG 1 cut(s) 92
Esp3I CGTCTC 2 cut(s) 45, 290
FaeI CATG 2 cut(s) 47, 197
FaiI YATR 5 cut(s) 45, 101, 195, 204, 210
FatI CATG 2 cut(s) 43, 193
FokI GGATG 1 cut(s) 36
FriOI GRGCYC 2 cut(s) 342, 455
FspBI CTAG 4 cut(s) 93, 363, 476, 511
GsaI CCCAGC 4 cut(s) 326, 352, 439, 465
GsuI CTGGAG 2 cut(s) 381, 389
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 2 cut(s) 47, 197
HinfI GANTC 1 cut(s) 411
HphI GGTGA 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 386, 499
Hpy188III TCNNGA 2 cut(s) 13, 128
Hpy99I CGWCG 2 cut(s) 377, 490
HpyAV CCTTC 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 359, 472
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 445
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 2 cut(s) 47, 197
Kzo9I GATC 5 cut(s) 86, 379, 386, 492, 499
LmnI GCTCC 4 cut(s) 40, 253, 345, 458
MaeI CTAG 4 cut(s) 93, 363, 476, 511
MalI GATC 5 cut(s) 88, 381, 388, 494, 501
MbiI CCGCTC 1 cut(s) 248
MboI GATC 5 cut(s) 86, 379, 386, 492, 499
MhlI GDGCHC 2 cut(s) 342, 455
MluCI AATT 1 cut(s) 261
MmeI TCCRAC 3 cut(s) 77, 266, 302
MnlI CCTC 3 cut(s) 288, 405, 413
MseI TTAA 2 cut(s) 65, 228
MspCI CTTAAG 1 cut(s) 64
MspR9I CCNGG 2 cut(s) 84, 407
MvaI CCWGG 2 cut(s) 84, 407
MwoI GCNNNNNNNGC 2 cut(s) 332, 445
NdeII GATC 5 cut(s) 86, 379, 386, 492, 499
NlaIII CATG 2 cut(s) 47, 197
NlaIV GGNNCC 3 cut(s) 36, 81, 120
NmeAIII GCCGAG 3 cut(s) 267, 361, 474
PceI AGGCCT 1 cut(s) 97
PfeI GAWTC 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 82
PsiI TTATAA 1 cut(s) 210
Psp124BI GAGCTC 2 cut(s) 342, 455
Psp6I CCWGG 2 cut(s) 82, 405
PspFI CCCAGC 4 cut(s) 322, 348, 435, 461
PspGI CCWGG 2 cut(s) 82, 405
PspN4I GGNNCC 3 cut(s) 36, 81, 120
SacI GAGCTC 2 cut(s) 342, 455
SaqAI TTAA 2 cut(s) 65, 228
Sau3AI GATC 5 cut(s) 86, 379, 386, 492, 499
ScrFI CCNGG 2 cut(s) 84, 407
SduI GDGCHC 2 cut(s) 342, 455
SfcI CTRYAG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 13, 64
SmoI CTYRAG 2 cut(s) 13, 64
Sse9I AATT 1 cut(s) 261
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 3 cut(s) 107, 246, 392
SspI AATATT 1 cut(s) 214
SspMI CTAG 4 cut(s) 93, 363, 476, 511
SstI GAGCTC 2 cut(s) 342, 455
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 82, 405
StyI CCWWGG 1 cut(s) 92
TasI AATT 1 cut(s) 261
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 2 cut(s) 65, 228
Tru9I TTAA 2 cut(s) 65, 228
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 27
Vha464I CTTAAG 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XmaJI CCTAGG 1 cut(s) 92
XspI CTAG 4 cut(s) 93, 363, 476, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.