Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

6851341 .. 6853106

Gene Structure 1766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGTATTTCTCGTGACTCTATCCACAAGAGGCGTGCCACTGGAGGCAAGCAGAAGCAATGGAGGAAGAAGCGAAAGTATGAGATGGGAAGGCAGCCAGCCAACACCAAGCTCTCAAGCAACAAGACGGTCAGAAGAATAAGAGTTCGTGGTGGAAATGTTAAGTGGCGTGCGTTGAGGCTCGATACTGGTAACTACTCGTGGGGAAGTGAAGCAACTACCCGCAAGACCAGAGTCCTTGATGTGGTCTACAATGCCTCCAACAATGAGCTTGTACGTACTAAGACACTTGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCGTTCAAGCAGTGGTACCTCTCGCACTATGGTGTTGAGCTTGGGCGCAAGAAGAAGAGTGCTTCTTCCACCAAGAAGGACGGAGAGGAAGGTGAAGAGGCAGCTGTTGCAGCTCCTGAGGAGGTCAAGAAGAGCAACCACCTCCTGAGAAAGATTGCAAGCCGTCAAGAGGGTCGCAGTCTTGATTCACACATTGAGGACCAATTTGCAAGTGGACGTTTGTTGGCTTGTATCTCTTCAAGGCCTGGCCAGTGCGGGCGTGCTGATGGATACATCTTGGAAGGTAAAGAGTTGGAGTTCTACATGAAGAAGATCCAGAAGAAGAAGGGCAAGGGTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

222

Amino Acids

24.99

Weight (kDa)

10.32

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 201	2.5e-53	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	2 cut(s)	223, 579
AclWI	GGATC	1 cut(s)	631
AcoI	YGGCCR	1 cut(s)	571
AfaI	GTAC	3 cut(s)	276, 280, 341
AfiI	CCNNNNNNNGG	2 cut(s)	244, 493
AgsI	TTSAA	2 cut(s)	331, 564
AjnI	CCWGG	1 cut(s)	568
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	5 cut(s)	112, 271, 364, 428, 437
AluI	AGCT	5 cut(s)	112, 271, 364, 428, 437
AlwI	GGATC	1 cut(s)	631
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	566, 571
ApeKI	GCWGC	5 cut(s)	94, 320, 425, 434, 662
Asp718I	GGTACC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	523
AxyI	CCTNAGG	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	339
BauI	CACGAG	2 cut(s)	12, 199
BbvI	GCAGC	5 cut(s)	106, 307, 437, 446, 649
BccI	CCATC	2 cut(s)	79, 584
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	570
BciVI	GTATCC	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	587
BisI	GCNGC	5 cut(s)	95, 321, 426, 435, 663
BlsI	GCNGC	5 cut(s)	96, 322, 427, 436, 664
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	307
BoxI	GACNNNNGTC	2 cut(s)	233, 290
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 493
Bse1I	ACTGG	3 cut(s)	46, 193, 574
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	244, 493
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	432, 461
BseNI	ACTGG	3 cut(s)	46, 193, 574
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	5 cut(s)	106, 307, 437, 446, 649
BshFI	GGCC	2 cut(s)	568, 573
BshNI	GGYRCC	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	244, 493
BsnI	GGCC	2 cut(s)	568, 573
Bsp143I	GATC	1 cut(s)	636
BspACI	CCGC	2 cut(s)	223, 579
BspANI	GGCC	2 cut(s)	568, 573
BspCNI	CTCAG	2 cut(s)	433, 462
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	631
BspQI	GCTCTTC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	65
BsrI	ACTGG	3 cut(s)	46, 193, 574
BssMI	GATC	1 cut(s)	636
BssSI	CACGAG	2 cut(s)	12, 199
Bst2BI	CACGAG	2 cut(s)	12, 199
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	4 cut(s)	374, 414, 449, 565
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	7 cut(s)	36, 50, 99, 171, 484, 581, 585
BstDEI	CTNAG	4 cut(s)	282, 441, 470, 666
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	1 cut(s)	639
BstMBI	GATC	1 cut(s)	636
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 434
BstNI	CCWGG	1 cut(s)	570
BstPAI	GACNNNNGTC	2 cut(s)	233, 290
BstSCI	CCNGG	1 cut(s)	568
BstSNI	TACGTA	1 cut(s)	278
BstV1I	GCAGC	5 cut(s)	106, 307, 437, 446, 649
BstX2I	RGATCY	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	636
Bsu36I	CCTNAGG	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	568, 573
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	3 cut(s)	39, 341, 581
Cac8I	GCNNGC	7 cut(s)	36, 50, 99, 171, 484, 581, 585
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	3 cut(s)	275, 279, 340
CviAII	CATG	1 cut(s)	628
CviQI	GTAC	3 cut(s)	275, 279, 340
DdeI	CTNAG	4 cut(s)	282, 441, 470, 666
DpnI	GATC	1 cut(s)	638
DpnII	GATC	1 cut(s)	636
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	4 cut(s)	374, 414, 449, 565
EarI	CTCTTC	4 cut(s)	374, 414, 449, 565
Eco105I	TACGTA	1 cut(s)	278
Eco147I	AGGCCT	1 cut(s)	568
Eco47I	GGWCC	1 cut(s)	523
Eco81I	CCTNAGG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	568
FaeI	CATG	1 cut(s)	631
FaiI	YATR	3 cut(s)	81, 354, 629
FatI	CATG	1 cut(s)	627
FauI	CCCGC	2 cut(s)	230, 572
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	5 cut(s)	95, 321, 426, 435, 663
Fsp4HI	GCNGC	5 cut(s)	95, 321, 426, 435, 663
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	5 cut(s)	95, 321, 426, 435, 663
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	568, 573
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	631
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	17, 234, 509
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	250, 539
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	8 cut(s)	14, 295, 440, 451, 469, 491, 506, 640
Hpy8I	GTNNAC	2 cut(s)	250, 539
HpyAV	CCTTC	5 cut(s)	84, 394, 407, 599, 643
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	277, 541
HpyCH4V	TGCA	3 cut(s)	434, 482, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 434
HpyF3I	CTNAG	4 cut(s)	282, 441, 470, 666
HpySE526I	ACGT	2 cut(s)	277, 541
Hsp92II	CATG	1 cut(s)	631
HspAI	GCGC	1 cut(s)	370
KpnI	GGTACC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	636
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	2 cut(s)	328, 442
Lsp1109I	GCAGC	5 cut(s)	106, 307, 437, 446, 649
LweI	GCATC	1 cut(s)	307
MaeII	ACGT	2 cut(s)	277, 541
MaeIII	GTNAC	2 cut(s)	14, 191
MalI	GATC	1 cut(s)	638
MboI	GATC	1 cut(s)	636
MflI	RGATCY	1 cut(s)	636
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	1 cut(s)	527
MluNI	TGGCCA	1 cut(s)	573
MlyI	GAGTC	2 cut(s)	11, 243
MmeI	TCCRAC	2 cut(s)	285, 597
Mox20I	TGGCCA	1 cut(s)	573
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	431, 434
NdeII	GATC	1 cut(s)	636
NlaIII	CATG	1 cut(s)	631
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	568
PciSI	GCTCTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	5 cut(s)	96, 322, 427, 436, 664
PleI	GAGTC	2 cut(s)	11, 242
PpsI	GAGTC	2 cut(s)	11, 242
Ppu21I	YACGTR	1 cut(s)	278
PshAI	GACNNNNGTC	2 cut(s)	233, 290
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	636
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	3 cut(s)	276, 280, 341
RsaNI	GTAC	3 cut(s)	275, 279, 340
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	5 cut(s)	95, 321, 426, 435, 663
Sau3AI	GATC	1 cut(s)	636
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	2 cut(s)	11, 243
ScrFI	CCNGG	1 cut(s)	570
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SnaBI	TACGTA	1 cut(s)	278
Sse9I	AATT	1 cut(s)	527
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	2 cut(s)	223, 579
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	280, 544
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	527
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	3 cut(s)	46, 341, 581
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	5 cut(s)	94, 320, 425, 434, 662
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	644
TspGWI	ACGGA	2 cut(s)	315, 420
TspRI	CASTG	3 cut(s)	46, 341, 581
VpaK11BI	GGWCC	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.