Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

11555901 .. 11557412

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGTATTTTCAGGGACTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGTCAGCCGGCAAATACCAAGATCTCAAGCAACAAAACTGTAAGAAGAATTCGTGTTAGAGGTGGCAATGTGAAGTGGAGGGCCCTGAGATTGGATACTGGGAACTTTTCTTGGGGTAGTGAGGCTGTTACTCGCAAGACTCGTATTCTTGATGTCGTTTACAATGCCTCAAACAACGAACTTGTTAGGACACAGACTCTTGTGAAGAGTGCAATTGTTCAGGTGGATGCTGCTCCTTTTAGGCAATGGTATCTACAGCACTACAATGTTGATATCGGGAGGAAGAAAAAGATAGCTGCAAAAAAGGATGCCAAGGATGAGGCAGATGGCACCACAGAAGAAACCAAAAAGAGCAGCAATCTCCTGAGGAAGCTTGAGAAGTGCCAGAAAGATCGTACTCTTGATTCCCACATCGAAGAGCAGTTTAGTGGTGGTAGGTTGTTGGCTTGCATTTCTTCCCGCCCAGGCCAATGTGGAAGATCTGATGGGTACATTTTGGAGGGGAAAGAATTAAAGTTTTACATGAAGAAACTCCAGAGGAAGAAGGGAAAGGCAGCTGGTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

220

Amino Acids

25.03

Weight (kDa)

10.44

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 196	5e-54	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	550
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	2 cut(s)	487, 581
AfiI	CCNNNNNNNGG	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	5 cut(s)	59, 85, 386, 463, 647
AluI	AGCT	5 cut(s)	59, 85, 386, 463, 647
AoxI	GGCC	2 cut(s)	171, 556
ApaI	GGGCCC	1 cut(s)	175
ApeKI	GCWGC	6 cut(s)	320, 386, 444, 644, 653, 656
ApoI	RAATTY	1 cut(s)	138
AscI	GGCGCGCC	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	36, 38
AspS9I	GGNCC	2 cut(s)	171, 172
AxyI	CCTNAGG	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	175
BbvI	GCAGC	6 cut(s)	307, 373, 456, 640, 643, 656
BccI	CCATC	2 cut(s)	410, 569
BciT130I	CCWGG	1 cut(s)	555
BciVI	GTATCC	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	178
BglII	AGATCT	2 cut(s)	111, 569
BisI	GCNGC	6 cut(s)	321, 387, 445, 645, 654, 657
BlsI	GCNGC	6 cut(s)	322, 388, 446, 646, 655, 658
Bme1390I	CCNGG	1 cut(s)	555
BmgT120I	GGNCC	2 cut(s)	171, 172
BmiI	GGNNCC	2 cut(s)	173, 421
BmrFI	CCNGG	1 cut(s)	555
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	307, 388
BmuI	ACTGGG	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	608
BpuEI	CTTGAG	2 cut(s)	100, 485
BsaJI	CCNNGG	2 cut(s)	402, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	46, 193
Bse21I	CCTNAGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	163, 341
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	402, 553
BseGI	GGATG	3 cut(s)	322, 403, 412
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	2 cut(s)	163, 341
BseMII	CTCAG	2 cut(s)	167, 446
BseNI	ACTGG	2 cut(s)	46, 193
BsePI	GCGCGC	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	6 cut(s)	307, 373, 456, 640, 643, 656
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	173, 558
BshNI	GGYRCC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	173, 558
Bsp120I	GGGCCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	111, 481, 569
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	2 cut(s)	173, 558
BspCNI	CTCAG	2 cut(s)	168, 447
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	173, 421
BspQI	GCTCTTC	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	163, 341
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	46, 193
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	402, 553
BssHII	GCGCGC	1 cut(s)	34
BssMI	GATC	3 cut(s)	111, 481, 569
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	290, 501
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	3 cut(s)	36, 99, 538
BstDEI	CTNAG	2 cut(s)	176, 455
BstF5I	GGATG	3 cut(s)	322, 403, 412
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	36, 38
BstKTI	GATC	3 cut(s)	114, 484, 572
BstMBI	GATC	3 cut(s)	111, 481, 569
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 650, 653
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	175
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	6 cut(s)	307, 373, 456, 640, 643, 656
BstX2I	RGATCY	2 cut(s)	111, 569
BstYI	RGATCY	2 cut(s)	111, 569
Bsu36I	CCTNAGG	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	173, 558
BtsCI	GGATG	3 cut(s)	322, 403, 412
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	36, 99, 538
CfoI	GCGC	2 cut(s)	36, 38
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	171, 172
Csp6I	GTAC	2 cut(s)	486, 580
CviAII	CATG	1 cut(s)	613
CviQI	GTAC	2 cut(s)	486, 580
DdeI	CTNAG	2 cut(s)	176, 455
DpnI	GATC	3 cut(s)	113, 483, 571
DpnII	GATC	3 cut(s)	111, 481, 569
Eam1104I	CTCTTC	2 cut(s)	290, 501
EarI	CTCTTC	2 cut(s)	290, 501
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	2 cut(s)	171, 172
EcoRI	GAATTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	616
FaiI	YATR	4 cut(s)	23, 81, 614, 661
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	612
FauI	CCCGC	1 cut(s)	557
Fnu4HI	GCNGC	6 cut(s)	321, 387, 445, 645, 654, 657
FokI	GGATG	3 cut(s)	329, 410, 419
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	6 cut(s)	321, 387, 445, 645, 654, 657
GlaI	GCGC	2 cut(s)	35, 37
GluI	GCNGC	6 cut(s)	321, 387, 445, 645, 654, 657
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	173, 558
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	2 cut(s)	36, 38
Hin1II	CATG	1 cut(s)	616
Hin6I	GCGC	2 cut(s)	34, 36
HinP1I	GCGC	2 cut(s)	34, 36
HindIII	AAGCTT	2 cut(s)	57, 461
HinfI	GANTC	4 cut(s)	17, 229, 286, 494
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	5 cut(s)	239, 367, 454, 491, 625
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	5 cut(s)	25, 302, 389, 540, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 650, 653
HpyF3I	CTNAG	2 cut(s)	176, 455
Hsp92II	CATG	1 cut(s)	616
HspAI	GCGC	2 cut(s)	34, 36
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	111, 481, 569
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	6 cut(s)	307, 373, 456, 640, 643, 656
LweI	GCATC	2 cut(s)	307, 388
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	113, 483, 571
MboI	GATC	3 cut(s)	111, 481, 569
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	2 cut(s)	111, 569
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	3 cut(s)	138, 303, 599
MlyI	GAGTC	3 cut(s)	11, 223, 280
MroNI	GCCGGC	1 cut(s)	97
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	31, 650, 653
NaeI	GCCGGC	1 cut(s)	99
NdeII	GATC	3 cut(s)	111, 481, 569
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	616
NlaIV	GGNNCC	2 cut(s)	173, 421
PalAI	GGCGCGCC	1 cut(s)	34
PauI	GCGCGC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	6 cut(s)	322, 388, 446, 646, 655, 658
PleI	GAGTC	3 cut(s)	11, 223, 280
PpsI	GAGTC	3 cut(s)	11, 223, 280
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	173, 421
PspOMI	GGGCCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	171, 172
PsuI	RGATCY	2 cut(s)	111, 569
PteI	GCGCGC	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	487, 581
RsaNI	GTAC	2 cut(s)	486, 580
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	6 cut(s)	321, 387, 445, 645, 654, 657
Sau3AI	GATC	3 cut(s)	111, 481, 569
Sau96I	GGNCC	2 cut(s)	171, 172
SchI	GAGTC	3 cut(s)	11, 223, 280
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	8 cut(s)	61, 87, 154, 315, 388, 465, 530, 649
SfaNI	GCATC	2 cut(s)	307, 388
SfcI	CTRYAG	1 cut(s)	344
SgsI	GGCGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	115, 464
SmoI	CTYRAG	2 cut(s)	115, 464
Sse9I	AATT	3 cut(s)	138, 303, 599
SsiI	CCGC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	504
TasI	AATT	3 cut(s)	138, 303, 599
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	6 cut(s)	320, 386, 444, 644, 653, 656
TspDTI	ATGAA	1 cut(s)	629
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.