Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Forward (+)

26107510 .. 26109771

Gene Structure 2262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1190000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGTATTTCTCGTGATTCCATGCACAAGAGACGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGCGAAAGTACGAGCTCGGAAGGCAACCTGCTAACACCAAGTTGTCAAGCAACAAGACAGTGAGGAGGATCAGGGTTCGAGGTGGGAATGTCAAGTGGCGTGCTCTGAGGCTCGACACTGGAAACTTCTCCTGGGGTAGTGAGACCGTGACTCGCAAAACCCGTCTTCTTGATGTTGTGTACAATGCATCTAACAATGAGTTGGTCCGTACTCAAACTTTGGTGAAGAGTGCCATTGTTCAGGTTGATGCTGCACCATTCAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATTGGCCGCAAGAAGAAAACTGCGGCAGCTGCCAAGAAAGAAGCAGAGGATGGTGAAGCACCTGCTGCTGCTCCCGAGGAGGCAAAGAAGAGCAACCATGTAGCCAGAAAGCTGGAGAAGCGTCAACAGACTCGCACCTTGGACCAGCATATTGAGGAACAATTTGGCGGTGGTCGTCTGTTGGCTTGTATTTCATCACGACCTGGTCAGTGTGGCCGTTGTGATGGATATATCTTGGAGGGCAGAGAGCTGGAGTTTTACATGAAGAAGCTCCAGAGGAAGAAGGGGAAGGGAGCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

223

Amino Acids

25.08

Weight (kDa)

10.46

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 200	1.8e-53	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	2 cut(s)	106, 433
AciI	CCGC	3 cut(s)	370, 386, 531
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	2 cut(s)	367, 577
AfaI	GTAC	3 cut(s)	80, 251, 280
AgsI	TTSAA	2 cut(s)	331, 362
AjiI	CACGTC	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	200, 565
AluBI	AGCT	6 cut(s)	85, 392, 475, 613, 634, 659
AluI	AGCT	6 cut(s)	85, 392, 475, 613, 634, 659
Alw21I	GWGCWC	2 cut(s)	87, 175
Alw26I	GTCTC	2 cut(s)	25, 206
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	367, 577
ApeKI	GCWGC	7 cut(s)	320, 389, 392, 428, 431, 659, 662
AspS9I	GGNCC	2 cut(s)	274, 505
AsuHPI	GGTGA	2 cut(s)	304, 428
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	274, 505
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	2 cut(s)	87, 175
BbvI	GCAGC	7 cut(s)	307, 379, 401, 415, 418, 646, 649
BccI	CCATC	2 cut(s)	407, 581
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	2 cut(s)	202, 567
BcoDI	GTCTC	2 cut(s)	25, 206
BfuAI	ACCTGC	2 cut(s)	106, 433
BisI	GCNGC	9 cut(s)	321, 370, 387, 390, 393, 429, 432, 660, 663
BlsI	GCNGC	9 cut(s)	322, 371, 388, 391, 394, 430, 433, 661, 664
Bme1390I	CCNGG	2 cut(s)	202, 567
Bme18I	GGWCC	2 cut(s)	274, 505
BmeT110I	CYCGRG	1 cut(s)	437
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	274, 505
BmrFI	CCNGG	2 cut(s)	202, 567
BmsI	GCATC	2 cut(s)	266, 307
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	5 cut(s)	63, 329, 497, 620, 635
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	201, 438, 501
Bse1I	ACTGG	2 cut(s)	46, 193
BseBI	CCWGG	2 cut(s)	202, 567
BseDI	CCNNGG	3 cut(s)	201, 438, 501
BseGI	GGATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	46, 193
BseRI	GAGGAG	2 cut(s)	148, 455
BseXI	GCAGC	7 cut(s)	307, 379, 401, 415, 418, 646, 649
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	369, 579
BsiHKAI	GWGCWC	2 cut(s)	87, 175
BsiHKCI	CYCGRG	1 cut(s)	437
BsmAI	GTCTC	2 cut(s)	25, 206
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	369, 579
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	87, 175
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	3 cut(s)	370, 386, 531
BspANI	GGCC	2 cut(s)	369, 579
BspCNI	CTCAG	1 cut(s)	168
BspMI	ACCTGC	2 cut(s)	106, 433
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	46, 193
BssECI	CCNNGG	3 cut(s)	201, 438, 501
BssMI	GATC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	202, 567
Bst4CI	ACNGT	2 cut(s)	130, 217
Bst6I	CTCTTC	2 cut(s)	290, 446
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	25, 206
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 392, 428, 481
BstNI	CCWGG	2 cut(s)	202, 567
BstSCI	CCNGG	2 cut(s)	200, 565
BstV1I	GCAGC	7 cut(s)	307, 379, 401, 415, 418, 646, 649
BstV2I	GAAGAC	1 cut(s)	227
BstXI	CCANNNNNNTGG	2 cut(s)	353, 475
BsuRI	GGCC	2 cut(s)	369, 579
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	5 cut(s)	39, 135, 186, 341, 578
BveI	ACCTGC	2 cut(s)	106, 433
Cac8I	GCNNGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	274, 505
CseI	GACGC	1 cut(s)	473
CsiI	ACCWGGT	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	79, 250, 279
CviAII	CATG	3 cut(s)	22, 461, 625
CviQI	GTAC	3 cut(s)	79, 250, 279
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	367, 577
Eam1104I	CTCTTC	2 cut(s)	290, 446
EarI	CTCTTC	2 cut(s)	290, 446
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	274, 505
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	200, 565
EcoT14I	CCWWGG	1 cut(s)	501
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	25, 464, 628
FaiI	YATR	6 cut(s)	23, 354, 462, 513, 594, 626
FatI	CATG	3 cut(s)	21, 460, 624
Fnu4HI	GCNGC	9 cut(s)	321, 370, 387, 390, 393, 429, 432, 660, 663
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	9 cut(s)	321, 370, 387, 390, 393, 429, 432, 660, 663
GluI	GCNGC	9 cut(s)	321, 370, 387, 390, 393, 429, 432, 660, 663
GsuI	CTGGAG	5 cut(s)	63, 329, 497, 620, 635
HaeIII	GGCC	2 cut(s)	369, 579
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	25, 464, 628
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	3 cut(s)	17, 220, 493
HphI	GGTGA	2 cut(s)	304, 428
Hpy166II	GTNNAC	2 cut(s)	250, 488
Hpy188I	TCNGA	2 cut(s)	89, 177
Hpy188III	TCNNGA	5 cut(s)	14, 239, 437, 561, 637
Hpy8I	GTNNAC	2 cut(s)	250, 488
HpyAV	CCTTC	4 cut(s)	49, 84, 640, 646
HpyCH4III	ACNGT	2 cut(s)	130, 217
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	25, 257, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 392, 428, 481
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	25, 464, 628
Kzo9I	GATC	1 cut(s)	138
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	3 cut(s)	439, 639, 656
Lsp1109I	GCAGC	7 cut(s)	307, 379, 401, 415, 418, 646, 649
LweI	GCATC	2 cut(s)	266, 307
MabI	ACCWGGT	1 cut(s)	565
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	8 cut(s)	64, 79, 227, 307, 388, 463, 640, 655
MhlI	GDGCHC	2 cut(s)	87, 175
MluCI	AATT	2 cut(s)	363, 524
MlyI	GAGTC	2 cut(s)	214, 487
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	1 cut(s)	667
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	202, 567
MvaI	CCWGG	2 cut(s)	202, 567
MwoI	GCNNNNNNNGC	4 cut(s)	91, 392, 428, 481
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	3 cut(s)	25, 464, 628
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	259
PaqCI	CACCTGC	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	567
PkrI	GCNGC	9 cut(s)	322, 371, 388, 391, 394, 430, 433, 661, 664
PleI	GAGTC	2 cut(s)	214, 487
PpsI	GAGTC	2 cut(s)	214, 487
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	200, 565
PspGI	CCWGG	2 cut(s)	200, 565
PspPI	GGNCC	2 cut(s)	274, 505
PsyI	GACNNNGTC	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	80, 251, 280
RsaNI	GTAC	3 cut(s)	79, 250, 279
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	9 cut(s)	321, 370, 387, 390, 393, 429, 432, 660, 663
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	274, 505
SchI	GAGTC	2 cut(s)	214, 487
ScrFI	CCNGG	2 cut(s)	202, 567
SduI	GDGCHC	2 cut(s)	87, 175
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	266, 307
SinI	GGWCC	2 cut(s)	274, 505
Sse9I	AATT	2 cut(s)	363, 524
SsiI	CCGC	3 cut(s)	370, 386, 531
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	200, 565
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	130, 217
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	148, 183
TasI	AATT	2 cut(s)	363, 524
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	372, 389
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TscAI	CASTG	5 cut(s)	46, 135, 193, 341, 578
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	7 cut(s)	320, 389, 392, 428, 431, 659, 662
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	546, 641
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	5 cut(s)	46, 135, 193, 341, 578
Tth111I	GACNNNGTC	1 cut(s)	567
VpaK11BI	GGWCC	2 cut(s)	274, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.