Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

23902462 .. 23903767

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTATCTCTCGTGATTCAATTCACAAGAGACGTGCCACTGGTGGTAAGCAAAAAATGTGGAGGAAGAAGCGAAAGTATGAGCTTGGAAGACAACCAGCTAACACTAAGCTGTCAAGTAACAAGACGGTGAGGAGGATCCGTGTGCGTGGTGGGAATGTAAAGTGGCGAGCTTTGAGGCTCGATACTGGAAACTTCTCGTGGGGAAGTGAAGCTGTGACCCGCAAGACTAGGATCTTGGATGTGGCGTACAATGCATCAAACAATGAGCTTGTTCGTACACAAACTCTTGTGAAGAGTGCTATTGTTCAAGTTGATGCTGCTCCATTCAAGCAAGGGTATCTCCAACACTATGGAGTTGATATTGGTCGCAAGAAGAAAGGAGAGGCCGTTACCACTGAGGAAGTGAAGAAGAGCAATCATGTTCAAAGGAAGCTGGAGATGCGACAAGAAGGCAGAGCACTTGACTCGCACCTTGAAGAGCAGTTTAGCAGTGGAAGGTTACTTGCATGTATCGCATCAAGACCCGGACAATGTGGTCGTGCTGATGGGTACATATTAGAAGGTAAAGAGCTCGAATTCTACATGAAGAAACTTCAAAAGAAGAAGGGCAAGAATGCTGGTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

210

Amino Acids

23.77

Weight (kDa)

10.49

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 187	2.7e-54	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	537
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	3 cut(s)	133, 146, 242
AcsI	RAATTY	1 cut(s)	578
AfaI	GTAC	3 cut(s)	251, 280, 554
AgsI	TTSAA	6 cut(s)	21, 311, 331, 428, 479, 599
AjiI	CACGTC	1 cut(s)	35
AluBI	AGCT	8 cut(s)	85, 101, 112, 173, 215, 271, 436, 574
AluI	AGCT	8 cut(s)	85, 101, 112, 173, 215, 271, 436, 574
Alw21I	GWGCWC	2 cut(s)	463, 576
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	133, 146, 242
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	320, 626
ApoI	RAATTY	1 cut(s)	578
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	576
BauI	CACGAG	2 cut(s)	12, 199
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	463, 576
BbvI	GCAGC	2 cut(s)	307, 613
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	450, 484
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	321, 627
BlsI	GCNGC	2 cut(s)	322, 628
Bme1390I	CCNGG	1 cut(s)	528
BmgBI	CACGTC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	4 cut(s)	266, 307, 432, 527
BpiI	GAAGAC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	528
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 375, 405
Bse1I	ACTGG	2 cut(s)	46, 193
BseGI	GGATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	46, 193
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	307, 613
BshFI	GGCC	1 cut(s)	389
BsiHKAI	GWGCWC	2 cut(s)	463, 576
BsiSI	CCGG	1 cut(s)	528
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	463, 576
Bsp143I	GATC	2 cut(s)	138, 234
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	3 cut(s)	133, 146, 242
BspQI	GCTCTTC	2 cut(s)	407, 474
BsrI	ACTGG	2 cut(s)	46, 193
BssMI	GATC	2 cut(s)	138, 234
BssSI	CACGAG	2 cut(s)	12, 199
Bst2BI	CACGAG	2 cut(s)	12, 199
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	290, 407, 474
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	108, 399
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	141, 237
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	138, 234
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 442, 515, 626
BstNSI	RCATGY	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	2 cut(s)	307, 613
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	138, 234
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstYI	RGATCY	2 cut(s)	138, 234
BsuRI	GGCC	1 cut(s)	389
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	3 cut(s)	39, 396, 499
Cac8I	GCNNGC	1 cut(s)	171
Csp6I	GTAC	3 cut(s)	250, 279, 553
CspCI	CAANNNNNGTGG	2 cut(s)	41, 76
CviAII	CATG	3 cut(s)	422, 510, 586
CviQI	GTAC	3 cut(s)	250, 279, 553
DdeI	CTNAG	2 cut(s)	108, 399
DpnI	GATC	2 cut(s)	140, 236
DpnII	GATC	2 cut(s)	138, 234
DrdI	GACNNNNNNGTC	1 cut(s)	537
DseDI	GACNNNNNNGTC	1 cut(s)	537
Eam1104I	CTCTTC	3 cut(s)	290, 407, 474
EarI	CTCTTC	3 cut(s)	290, 407, 474
Ecl136II	GAGCTC	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	576
Eco53kI	GAGCTC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	425, 513, 589
FaiI	YATR	7 cut(s)	81, 354, 423, 511, 557, 587, 631
FatI	CATG	3 cut(s)	421, 509, 585
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	321, 627
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	2 cut(s)	321, 627
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	2 cut(s)	321, 627
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	3 cut(s)	425, 513, 589
HinfI	GANTC	2 cut(s)	17, 467
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188III	TCNNGA	2 cut(s)	14, 522
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	446, 492, 557, 601
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	257, 509, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 442, 515, 626
HpyF3I	CTNAG	2 cut(s)	108, 399
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	425, 513, 589
Kzo9I	GATC	2 cut(s)	138, 234
LguI	GCTCTTC	2 cut(s)	407, 474
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	6 cut(s)	27, 111, 174, 422, 541, 606
Lsp1109I	GCAGC	2 cut(s)	307, 613
LweI	GCATC	4 cut(s)	266, 307, 432, 527
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	4 cut(s)	119, 217, 391, 501
MalI	GATC	2 cut(s)	140, 236
MboI	GATC	2 cut(s)	138, 234
MboII	GAAGA	9 cut(s)	79, 102, 307, 388, 421, 424, 491, 601, 616
MflI	RGATCY	2 cut(s)	138, 234
MhlI	GDGCHC	2 cut(s)	463, 576
MluCI	AATT	2 cut(s)	21, 578
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	6 cut(s)	57, 126, 129, 171, 379, 394
Mph1103I	ATGCAT	1 cut(s)	259
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	622
MwoI	GCNNNNNNNGC	4 cut(s)	254, 442, 515, 626
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	138, 234
NlaIII	CATG	3 cut(s)	425, 513, 589
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	1 cut(s)	513
PciSI	GCTCTTC	2 cut(s)	407, 474
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	322, 628
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	138, 234
RsaI	GTAC	3 cut(s)	251, 280, 554
RsaNI	GTAC	3 cut(s)	250, 279, 553
SacI	GAGCTC	1 cut(s)	576
SapI	GCTCTTC	2 cut(s)	407, 474
SatI	GCNGC	2 cut(s)	321, 627
Sau3AI	GATC	2 cut(s)	138, 234
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	2 cut(s)	463, 576
SfaNI	GCATC	4 cut(s)	266, 307, 432, 527
Sse9I	AATT	2 cut(s)	21, 578
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	183, 576
TasI	AATT	2 cut(s)	21, 578
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	3 cut(s)	46, 403, 499
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	320, 626
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	602
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	46, 403, 499
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	513
XspI	CTAG	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.