Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007194.1

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Forward (+)

18034 .. 19432

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007194.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgcacaagaggcgcgccactggtggcaagaagaaagcttggaggaagaagcgaaagtatgagcttggtcgtcagcaggcaaataccaagatttcaagcaacaaaactgtaagaagaattcgtgttagaggtgccaatgtgaagtggagggccctgagattggatactgggaacttttcttggggtagtgaggctgttactcgcaagactcgtattcttgatgtcgtttacaatgcctcaaacaacgaacttgttaggacacagactcttgtgaagagtgcaattgttcaggtggatgctgctccttttaggcaatggtatctacagcactacaatgttgatatcgggaggaagaaaaagacagctgcaaaaaaggatgccaaggatgctgctaccgaggaggcagatggcaccacagaaaaaaccaaaaagagcagcaatctcctgaggaagcttgagaagtgccagaaagatcatactcttgattcccatatcgaagagcagtttagtggtggtaggttgttggcttgcatttcttcccgcccaggccaatgtggaagatctgatgggtacattttggaggggaaagaattagagttttacatgaagaaactccagaggaagaagggaaaggcagctggtgctgctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

217

Amino Acids

24.61

Weight (kDa)

10.34

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 410
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	5 cut(s)	38, 64, 365, 454, 638
AluI	AGCT	5 cut(s)	38, 64, 365, 454, 638
AoxI	GGCC	2 cut(s)	150, 547
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	7 cut(s)	299, 365, 389, 435, 635, 644, 647
ApoI	RAATTY	1 cut(s)	117
AscI	GGCGCGCC	1 cut(s)	13
AspLEI	GCGC	2 cut(s)	15, 17
AspS9I	GGNCC	2 cut(s)	150, 151
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	131, 410
BanII	GRGCYC	1 cut(s)	154
BbvI	GCAGC	7 cut(s)	286, 352, 376, 447, 631, 634, 647
BccI	CCATC	2 cut(s)	401, 560
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
BlsI	GCNGC	7 cut(s)	301, 367, 391, 437, 637, 646, 649
Bme1390I	CCNGG	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	150, 151
BmiI	GGNNCC	3 cut(s)	133, 152, 412
BmrFI	CCNGG	1 cut(s)	546
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	3 cut(s)	286, 367, 376
BmuI	ACTGGG	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	381, 396, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	25, 172
Bse21I	CCTNAGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	381, 396, 544
BseGI	GGATG	3 cut(s)	301, 382, 391
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	146, 437
BseNI	ACTGG	2 cut(s)	25, 172
BsePI	GCGCGC	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	7 cut(s)	286, 352, 376, 447, 631, 634, 647
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	152, 549
BshNI	GGYRCC	2 cut(s)	131, 410
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	2 cut(s)	152, 549
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	472, 560
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	2 cut(s)	152, 549
BspCNI	CTCAG	2 cut(s)	147, 438
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	133, 152, 412
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	2 cut(s)	131, 410
BsrDI	GCAATG	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	25, 172
BssECI	CCNNGG	3 cut(s)	381, 396, 544
BssHII	GCGCGC	1 cut(s)	13
BssMI	GATC	2 cut(s)	472, 560
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	269, 492
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	15, 78, 529
BstDEI	CTNAG	2 cut(s)	155, 446
BstF5I	GGATG	3 cut(s)	301, 382, 391
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	15, 17
BstKTI	GATC	2 cut(s)	475, 563
BstMBI	GATC	2 cut(s)	472, 560
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 386, 641, 644
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	7 cut(s)	286, 352, 376, 447, 631, 634, 647
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
Bsu36I	CCTNAGG	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	152, 549
BtsCI	GGATG	3 cut(s)	301, 382, 391
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	15, 78, 529
CfoI	GCGC	2 cut(s)	15, 17
Cfr13I	GGNCC	2 cut(s)	150, 151
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	1 cut(s)	604
CviJI	RGCY	9 cut(s)	38, 64, 152, 194, 365, 454, 527, 549, 638
CviKI_1	RGCY	9 cut(s)	38, 64, 152, 194, 365, 454, 527, 549, 638
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	155, 446
DpnI	GATC	2 cut(s)	474, 562
DpnII	GATC	2 cut(s)	472, 560
Eam1104I	CTCTTC	2 cut(s)	269, 492
EarI	CTCTTC	2 cut(s)	269, 492
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	343
Eco81I	CCTNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	150, 151
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	607
FaiI	YATR	5 cut(s)	60, 477, 492, 605, 652
FatI	CATG	1 cut(s)	603
FauI	CCCGC	1 cut(s)	548
Fnu4HI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
FokI	GGATG	3 cut(s)	308, 389, 398
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
GlaI	GCGC	2 cut(s)	14, 16
GluI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	2 cut(s)	152, 549
HhaI	GCGC	2 cut(s)	15, 17
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	2 cut(s)	13, 15
HinP1I	GCGC	2 cut(s)	13, 15
HindIII	AAGCTT	2 cut(s)	36, 452
HinfI	GANTC	3 cut(s)	208, 265, 485
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	5 cut(s)	218, 346, 445, 482, 616
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	5 cut(s)	4, 281, 368, 531, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 386, 641, 644
HpyF3I	CTNAG	2 cut(s)	155, 446
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	2 cut(s)	13, 15
Kzo9I	GATC	2 cut(s)	472, 560
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	7 cut(s)	286, 352, 376, 447, 631, 634, 647
LweI	GCATC	3 cut(s)	286, 367, 376
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	474, 562
MboI	GATC	2 cut(s)	472, 560
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	117, 282, 590
MlyI	GAGTC	2 cut(s)	202, 259
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	2 cut(s)	365, 638
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	10, 386, 641, 644
NdeII	GATC	2 cut(s)	472, 560
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	3 cut(s)	133, 152, 412
PalAI	GGCGCGCC	1 cut(s)	13
PauI	GCGCGC	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	7 cut(s)	301, 367, 391, 437, 637, 646, 649
PleI	GAGTC	2 cut(s)	202, 259
PpsI	GAGTC	2 cut(s)	202, 259
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	3 cut(s)	133, 152, 412
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	150, 151
PsuI	RGATCY	1 cut(s)	560
PteI	GCGCGC	1 cut(s)	13
PvuII	CAGCTG	2 cut(s)	365, 638
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
RseI	CAYNNNNRTG	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	492
SatI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
Sau3AI	GATC	2 cut(s)	472, 560
Sau96I	GGNCC	2 cut(s)	150, 151
SchI	GAGTC	2 cut(s)	202, 259
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	8 cut(s)	40, 66, 133, 294, 367, 456, 521, 640
SfaNI	GCATC	3 cut(s)	286, 367, 376
SfcI	CTRYAG	1 cut(s)	323
SgsI	GGCGCGCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	117, 282, 590
SsiI	CCGC	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	117, 282, 590
TfiI	GAWTC	1 cut(s)	485
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	7 cut(s)	299, 365, 389, 435, 635, 644, 647
TspDTI	ATGAA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.