Rh5BG288200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001913
Physical Location & Seq
Reverse (-)
36682890 .. 36685348
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG288200.1

Sequence Viewer

Length: 657 bp
ATGCACAAGAGACGTGCCACTGGAGGCAAGAAGAAGGCGTGGAGGAAGAAGCGAAAGTATGAGCTCGGAAGGGTGCCTGCCAACACTAAACTGTCCAGCAACAAGACAGTGAGGAGGATCAGGGTTCGAGGTGGAAATGTGAAGTGGCGTGCTTTGAGGCTCGACACAGGAAATTTCTCTTGGGGTAGTGAGACTGTGACCAGGAAGACCCGTCTTCTTGATGTTGTCTACAATGCATCTAACAATGAGCTGGTGCGTACTCAAACCTTGGTGAAGGGTGCCATTGTTCAGGTTGATGCAGCACCTTTCAAGCAGTGGTATTCTACCCACTATGGTGTTGAAATTGGGCGCAGGAAGAAAACTGCAGCTGTTATCAAGAAAGAAGCAGAGGATGGTGAGGCCGCTACTGCTGCTGCCGCTGCTGCTGAGGAGGTGAAGAAGAGCAAGCATGTAGCAAGGAAGCTAGAGAAGCGTCAGCAGACTCGTGTGCTGGACCAGCATATTGAGGAACAATTTGGTGGTGGTCGTCTATTGGCTTGCATCTCTTCACGACCTGGTCAATGTGGCCGTGCAGATGGATACATCTTGGAGGGCAAAGAGCTGGAGTTTTACATGAAGAAGCTCCAGAAGAAGAAGGGAAAGGGAGCAGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000313 GO:0000462 GO:0000956 GO:0002164 GO:0002181 GO:0002182 GO:0002376 GO:0002520 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006414 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009790 GO:0009791 GO:0009792 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030097 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035166 GO:0035167 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043009 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043253 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048534 GO:0048542 GO:0048569 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Ribosomal_S8e

Protein Analysis

218

Amino Acids

24.46

Weight (kDa)

10.49

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 2 - 196 2.1e-51 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 73, 278
AccI GTMKAC 1 cut(s) 228
AciI CCGC 2 cut(s) 402, 417
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 2 cut(s) 310, 341
AjiI CACGTC 1 cut(s) 14
AjnI CCWGG 2 cut(s) 200, 553
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AleI CACNNNNGTG 1 cut(s) 333
AluBI AGCT 7 cut(s) 64, 250, 368, 463, 601, 622, 650
AluI AGCT 7 cut(s) 64, 250, 368, 463, 601, 622, 650
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 2 cut(s) 4, 185
AlwI GGATC 1 cut(s) 125
AoxI GGCC 2 cut(s) 399, 565
ApeKI GCWGC 8 cut(s) 299, 365, 410, 413, 419, 422, 647, 650
ApoI RAATTY 1 cut(s) 172
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 493
AsuHPI GGTGA 3 cut(s) 283, 407, 445
AvaII GGWCC 1 cut(s) 493
BanI GGYRCC 2 cut(s) 73, 278
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 1 cut(s) 483
BbsI GAAGAC 2 cut(s) 206, 212
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 7 cut(s) 311, 377, 397, 400, 406, 409, 637
BccI CCATC 2 cut(s) 386, 569
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 2 cut(s) 202, 555
BciVI GTATCC 1 cut(s) 572
BcoDI GTCTC 2 cut(s) 4, 185
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 363
BfuI GTATCC 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 202, 555
Bme18I GGWCC 1 cut(s) 493
BmgBI CACGTC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 493
BmiI GGNNCC 2 cut(s) 75, 280
BmrFI CCNGG 2 cut(s) 202, 555
BmsI GCATC 3 cut(s) 245, 286, 549
BpiI GAAGAC 2 cut(s) 206, 212
BpmI CTGGAG 3 cut(s) 42, 608, 623
Bpu10I CCTNAGC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 202, 555
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 2 cut(s) 127, 443
BseXI GCAGC 7 cut(s) 311, 377, 397, 400, 406, 409, 637
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 2 cut(s) 401, 567
BshNI GGYRCC 2 cut(s) 73, 278
BsiHKAI GWGCWC 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 4, 185
BsmBI CGTCTC 1 cut(s) 4
BsnI GGCC 2 cut(s) 401, 567
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 2 cut(s) 402, 417
BspANI GGCC 2 cut(s) 401, 567
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 75, 280
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 434
BspT107I GGYRCC 2 cut(s) 73, 278
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 2 cut(s) 202, 555
Bst4CI ACNGT 3 cut(s) 93, 109, 196
Bst6I CTCTTC 2 cut(s) 434, 550
BstC8I GCNNGC 4 cut(s) 78, 150, 446, 538
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 2 cut(s) 4, 185
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 7 cut(s) 407, 410, 416, 419, 422, 469, 496
BstNI CCWGG 2 cut(s) 202, 555
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 200, 553
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 7 cut(s) 311, 377, 397, 400, 406, 409, 637
BstV2I GAAGAC 2 cut(s) 206, 212
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 2 cut(s) 401, 567
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 3 cut(s) 18, 114, 320
Cac8I GCNNGC 4 cut(s) 78, 150, 446, 538
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 493
CseI GACGC 1 cut(s) 461
CsiI ACCWGGT 1 cut(s) 553
Csp6I GTAC 1 cut(s) 258
CviAII CATG 2 cut(s) 449, 613
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 426
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 434, 550
EarI CTCTTC 2 cut(s) 434, 550
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 200, 553
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 4
FaeI CATG 2 cut(s) 452, 616
FaiI YATR 5 cut(s) 60, 333, 450, 501, 614
FatI CATG 2 cut(s) 448, 612
FblI GTMKAC 1 cut(s) 228
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 66
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 350
GsuI CTGGAG 3 cut(s) 42, 608, 623
HaeIII GGCC 2 cut(s) 401, 567
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 351
Hin1II CATG 2 cut(s) 452, 616
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 1 cut(s) 481
HphI GGTGA 3 cut(s) 283, 407, 445
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 4 cut(s) 218, 376, 549, 625
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 4 cut(s) 28, 63, 268, 628
HpyCH4III ACNGT 3 cut(s) 93, 109, 196
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 6 cut(s) 4, 236, 299, 365, 540, 572
HpyF10VI GCNNNNNNNGC 7 cut(s) 407, 410, 416, 419, 422, 469, 496
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 2 cut(s) 452, 616
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 117
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 2 cut(s) 627, 644
Lsp1109I GCAGC 7 cut(s) 311, 377, 397, 400, 406, 409, 637
LweI GCATC 3 cut(s) 245, 286, 549
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 3 cut(s) 172, 342, 512
MlyI GAGTC 1 cut(s) 475
Mph1103I ATGCAT 1 cut(s) 238
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 3 cut(s) 368, 419, 650
MspR9I CCNGG 2 cut(s) 202, 555
MvaI CCWGG 2 cut(s) 202, 555
MwoI GCNNNNNNNGC 7 cut(s) 407, 410, 416, 419, 422, 469, 496
NdeII GATC 1 cut(s) 117
NlaIII CATG 2 cut(s) 452, 616
NlaIV GGNNCC 2 cut(s) 75, 280
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 452
OliI CACNNNNGTG 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 434
PflFI GACNNNGTC 1 cut(s) 555
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 200, 553
PspGI CCWGG 2 cut(s) 200, 553
PspN4I GGNNCC 2 cut(s) 75, 280
PspPI GGNCC 1 cut(s) 493
PstI CTGCAG 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 555
PvuII CAGCTG 2 cut(s) 368, 650
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 434
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 493
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 202, 555
SduI GDGCHC 1 cut(s) 66
SexAI ACCWGGT 1 cut(s) 553
SfaNI GCATC 3 cut(s) 245, 286, 549
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 3 cut(s) 172, 342, 512
SsiI CCGC 2 cut(s) 402, 417
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 200, 553
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 93, 109, 196
TaiI ACGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 127, 162
TasI AATT 3 cut(s) 172, 342, 512
TauI GCSGC 2 cut(s) 404, 419
TscAI CASTG 3 cut(s) 25, 114, 320
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 8 cut(s) 299, 365, 410, 413, 419, 422, 647, 650
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 629
TspRI CASTG 3 cut(s) 25, 114, 320
Tth111I GACNNNGTC 1 cut(s) 555
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.