Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

22226503 .. 22227670

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0155200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGCACAGCCAGGACTGTATATGCCGTGGACTCGCCGAATCCAGCTTCTGATGTTGCTGGTGAGACAGCTGCGGCGCTGGCAGCTTCCTCAATGGCATTCCGATCATCTGACCCTGGTTGTGCAGACACATTAGGAGCTTACAGTGATAATGCCAATGTTAGAGATGGTGTCTGCCCATTTTACTGTGATTTCGATGGTTACCAAGACGAATTGCTATGGAGTGCAGCCTGGCTGAGGAGAGTCACTCAGGATGGTGGTTACCTTGACTACATACAAAACAATGGCAAAACTCTTGGTGCAGAGGACAATATAAACGAATTTGGTTGGGACAACAAGCATGCTGGCCTCAATGTTCTAATCTCCAAGGTTAGGAAGTCCTGGAAGGCAACATGTACAACCTTGAATCGTACAAATCGTCGGCTGATAGCTTTCATGTGCACATTAATACCGGAGTCATCATCCTCCCACATCGAGTACACTGCAGCCGGTCTCATCTACAAGCCAGGAGGCAGCAATGTGCAACATGTAACTTCCATTTCATTCCTACTACTAGTTTACGCCAATTACCTTGCACGAACCTCGCAATCCCTCAACTGTGGAAACATAGATGTCAGTCCAACAACGCTTCGCCAAATCGCCAAAAAGCAGGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

219

Amino Acids

23.78

Weight (kDa)

6.28

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	3 - 219	2.5e-39	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	640
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	3 cut(s)	397, 412, 479
AfiI	CCNNNNNNNGG	2 cut(s)	237, 372
AflIII	ACRYGT	2 cut(s)	392, 526
AgsI	TTSAA	1 cut(s)	406
AhlI	ACTAGT	1 cut(s)	553
AjnI	CCWGG	5 cut(s)	11, 115, 230, 380, 505
AluBI	AGCT	5 cut(s)	47, 71, 86, 140, 431
AluI	AGCT	5 cut(s)	47, 71, 86, 140, 431
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	2 cut(s)	59, 497
Alw44I	GTGCAC	1 cut(s)	439
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	346
ApaLI	GTGCAC	1 cut(s)	439
ApeKI	GCWGC	5 cut(s)	71, 83, 227, 485, 513
ApoI	RAATTY	1 cut(s)	320
AseI	ATTAAT	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	74
BaeGI	GKGCMC	2 cut(s)	8, 443
Bbv12I	GWGCWC	1 cut(s)	443
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	5 cut(s)	58, 95, 239, 497, 525
BccI	CCATC	3 cut(s)	161, 191, 248
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	4 cut(s)	464, 498, 564, 598
BciT130I	CCWGG	5 cut(s)	13, 117, 232, 382, 507
BcoDI	GTCTC	2 cut(s)	59, 497
BcuI	ACTAGT	1 cut(s)	553
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	6 cut(s)	72, 75, 84, 228, 486, 514
BlsI	GCNGC	6 cut(s)	73, 76, 85, 229, 487, 515
Bme1390I	CCNGG	5 cut(s)	13, 117, 232, 382, 507
BmrFI	CCNGG	5 cut(s)	13, 117, 232, 382, 507
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	27, 115, 366
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 372
Bse118I	RCCGGY	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	5 cut(s)	13, 117, 232, 382, 507
BseDI	CCNNGG	3 cut(s)	27, 115, 366
BseGI	GGATG	2 cut(s)	259, 461
BseLI	CCNNNNNNNGG	2 cut(s)	237, 372
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	227, 263
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	2 cut(s)	8, 443
BseXI	GCAGC	5 cut(s)	58, 95, 239, 497, 525
BsgI	GTGCAG	3 cut(s)	144, 246, 321
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	452, 489
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	237, 372
BsmAI	GTCTC	2 cut(s)	59, 497
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	8, 443
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	1 cut(s)	104
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	228, 262
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	3 cut(s)	27, 115, 366
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	5 cut(s)	13, 117, 232, 382, 507
Bst4CI	ACNGT	4 cut(s)	19, 146, 188, 599
BstAUI	TGTACA	1 cut(s)	395
BstC8I	GCNNGC	3 cut(s)	81, 342, 346
BstDEI	CTNAG	2 cut(s)	236, 249
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	2 cut(s)	200, 260
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	259, 461
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	2 cut(s)	59, 497
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 83
BstNI	CCWGG	5 cut(s)	13, 117, 232, 382, 507
BstNSI	RCATGY	3 cut(s)	344, 396, 530
BstPI	GGTNACC	2 cut(s)	200, 260
BstSCI	CCNGG	5 cut(s)	11, 115, 230, 380, 505
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	2 cut(s)	8, 443
BstV1I	GCAGC	5 cut(s)	58, 95, 239, 497, 525
BsuRI	GGCC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	259, 461
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	151, 480
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	3 cut(s)	81, 342, 346
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	488
Csp6I	GTAC	3 cut(s)	396, 411, 478
CviAII	CATG	4 cut(s)	341, 393, 436, 527
CviQI	GTAC	3 cut(s)	396, 411, 478
DdeI	CTNAG	2 cut(s)	236, 249
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	497
Eco91I	GGTNACC	2 cut(s)	200, 260
EcoNI	CCTNNNNNAGG	1 cut(s)	235
EcoO65I	GGTNACC	2 cut(s)	200, 260
EcoRII	CCWGG	5 cut(s)	11, 115, 230, 380, 505
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	4 cut(s)	344, 396, 439, 530
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	4 cut(s)	340, 392, 435, 526
Fnu4HI	GCNGC	6 cut(s)	72, 75, 84, 228, 486, 514
FokI	GGATG	2 cut(s)	266, 448
Fsp4HI	GCNGC	6 cut(s)	72, 75, 84, 228, 486, 514
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	6 cut(s)	72, 75, 84, 228, 486, 514
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	2 cut(s)	452, 489
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	4 cut(s)	344, 396, 439, 530
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	5 cut(s)	32, 40, 243, 406, 455
HpaII	CCGG	2 cut(s)	452, 489
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	4 cut(s)	31, 441, 480, 559
Hpy188I	TCNGA	3 cut(s)	52, 104, 112
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	4 cut(s)	31, 441, 480, 559
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	4 cut(s)	19, 146, 188, 599
HpyCH4V	TGCA	7 cut(s)	125, 227, 302, 441, 485, 523, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 83
HpyF3I	CTNAG	2 cut(s)	236, 249
Hsp92II	CATG	4 cut(s)	344, 396, 439, 530
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	5 cut(s)	58, 95, 239, 497, 525
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	4 cut(s)	200, 244, 260, 529
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	8, 443
MluCI	AATT	4 cut(s)	212, 320, 565, 655
MlyI	GAGTC	3 cut(s)	26, 252, 464
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	8 cut(s)	100, 231, 298, 359, 475, 503, 592, 602
MseI	TTAA	2 cut(s)	446, 654
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	452, 489
MspR9I	CCNGG	5 cut(s)	13, 117, 232, 382, 507
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	5 cut(s)	13, 117, 232, 382, 507
MwoI	GCNNNNNNNGC	2 cut(s)	80, 83
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	4 cut(s)	344, 396, 439, 530
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	3 cut(s)	344, 396, 530
PaeI	GCATGC	1 cut(s)	344
PciI	ACATGT	2 cut(s)	392, 526
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	40, 406
PfoI	TCCNGGA	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	73, 76, 85, 229, 487, 515
PleI	GAGTC	3 cut(s)	26, 251, 463
PpsI	GAGTC	3 cut(s)	26, 251, 463
PscI	ACATGT	2 cut(s)	392, 526
PshBI	ATTAAT	1 cut(s)	446
Psp6I	CCWGG	5 cut(s)	11, 115, 230, 380, 505
PspEI	GGTNACC	2 cut(s)	200, 260
PspGI	CCWGG	5 cut(s)	11, 115, 230, 380, 505
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	3 cut(s)	397, 412, 479
RsaNI	GTAC	3 cut(s)	396, 411, 478
SaqAI	TTAA	2 cut(s)	446, 654
SatI	GCNGC	6 cut(s)	72, 75, 84, 228, 486, 514
Sau3AI	GATC	1 cut(s)	104
SchI	GAGTC	3 cut(s)	26, 252, 464
ScrFI	CCNGG	5 cut(s)	13, 117, 232, 382, 507
SduI	GDGCHC	2 cut(s)	8, 443
SfcI	CTRYAG	1 cut(s)	483
SpeI	ACTAGT	1 cut(s)	553
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	4 cut(s)	212, 320, 565, 655
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	5 cut(s)	11, 115, 230, 380, 505
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	4 cut(s)	19, 146, 188, 599
TaqI	TCGA	2 cut(s)	195, 474
TasI	AATT	4 cut(s)	212, 320, 565, 655
TatI	WGTACW	2 cut(s)	395, 477
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	40, 406
Tru1I	TTAA	2 cut(s)	446, 654
Tru9I	TTAA	2 cut(s)	446, 654
TscAI	CASTG	2 cut(s)	151, 487
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	5 cut(s)	71, 83, 227, 485, 513
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	424, 531
TspRI	CASTG	2 cut(s)	151, 487
VneI	GTGCAC	1 cut(s)	439
VspI	ATTAAT	1 cut(s)	446
XagI	CCTNNNNNAGG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	3 cut(s)	344, 396, 530
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.