Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

14441615 .. 14444660

Gene Structure 3046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G172800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGTATCTCACGTGACTCGATGCACAAGAGACGTGCCACTGGAGGCAAGAAGAAGGCATGGAGGAAGAAGAGAAAGTATGAGCTCGGCCGTCAGCCTGCAAATACTAAGCTTTCAAGCAACAAGACTGTTAGGCGAATCCGTGTGCGGGGAGGCAATGTGAAATGGAGAGCTCTCAGGTTGGATACTGGTAACTTCTCATGGGGTAGTGAAGCTGTTACTCGTAAAACCCGTCTCCTGGATGTTGTATACAATGCCTCAAACAATGAACTTGTTAGAACCCAAACTCTGGTGAAAAGTGCCATTGTCCAGGTGGATGCAGCTCCATTTAAGCAATGGTACCTTCAACATTACGGAGTTGAAATTGGCAGAAAGAAGAAGACTGCTGCTGCTGCTAAGAAGGATACCCCAGAGGTAATTGGAGAAGCAACTACAGAGGAAGCAAAGAAGAGTAACCATGTTGCGAGAAAGCTTGAGAAGCGTCAGCAAGGTCGCACCCTGGACGGCCATATTGAAGAGCAGTTTGGGGGTGGGAGATTGCTTGCTTGCATATCTTCCCGTCCAGGCCAATGTGGCAGAGCTGATGGGTACATCTTGGAAGGTAAGGAACTGGAGTTTTACATGAAGAAGCTCCAGAGGAAGAAGGGAAAGGGTGCTGGTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

224

Amino Acids

25.01

Weight (kDa)

10.53

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	1 cut(s)	148
AcoI	YGGCCR	2 cut(s)	88, 505
AcvI	CACGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	341, 590
AfiI	CCNNNNNNNGG	3 cut(s)	148, 238, 289
AgsI	TTSAA	4 cut(s)	117, 347, 362, 515
AjiI	CACGTC	1 cut(s)	35
AjnI	CCWGG	4 cut(s)	237, 309, 498, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	8 cut(s)	85, 112, 173, 215, 323, 472, 581, 631
AluI	AGCT	8 cut(s)	85, 112, 173, 215, 323, 472, 581, 631
Alw21I	GWGCWC	2 cut(s)	87, 175
Alw26I	GTCTC	2 cut(s)	25, 239
AoxI	GGCC	3 cut(s)	88, 505, 565
ApeKI	GCWGC	6 cut(s)	320, 386, 389, 392, 662, 665
Asp718I	GGTACC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	339
BanII	GRGCYC	2 cut(s)	87, 175
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	87, 175
BbvI	GCAGC	6 cut(s)	332, 373, 376, 379, 649, 652
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	2 cut(s)	75, 520
BciT130I	CCWGG	4 cut(s)	239, 311, 500, 564
BciVI	GTATCC	2 cut(s)	178, 397
BcoDI	GTCTC	2 cut(s)	25, 239
BfmI	CTRYAG	1 cut(s)	432
BfuI	GTATCC	2 cut(s)	178, 397
BglI	GCCNNNNNGGC	1 cut(s)	573
BisI	GCNGC	6 cut(s)	321, 387, 390, 393, 663, 666
BlsI	GCNGC	6 cut(s)	322, 388, 391, 394, 664, 667
Bme1390I	CCNGG	4 cut(s)	239, 311, 500, 564
BmgBI	CACGTC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	4 cut(s)	239, 311, 500, 564
BmsI	GCATC	2 cut(s)	12, 307
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	3 cut(s)	63, 617, 632
BpuEI	CTTGAG	1 cut(s)	494
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 238, 289
Bse1I	ACTGG	3 cut(s)	46, 193, 615
Bse3DI	GCAATG	2 cut(s)	163, 341
BseBI	CCWGG	4 cut(s)	239, 311, 500, 564
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	2 cut(s)	247, 322
BseLI	CCNNNNNNNGG	3 cut(s)	148, 238, 289
BseMI	GCAATG	2 cut(s)	163, 341
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	3 cut(s)	46, 193, 615
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	6 cut(s)	332, 373, 376, 379, 649, 652
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	3 cut(s)	90, 507, 567
BshNI	GGYRCC	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	2 cut(s)	87, 175
BslI	CCNNNNNNNGG	3 cut(s)	148, 238, 289
BsmAI	GTCTC	2 cut(s)	25, 239
BsmBI	CGTCTC	2 cut(s)	25, 239
BsnI	GGCC	3 cut(s)	90, 507, 567
Bsp1286I	GDGCHC	2 cut(s)	87, 175
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	3 cut(s)	90, 507, 567
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	2 cut(s)	163, 341
BsrI	ACTGG	3 cut(s)	46, 193, 615
BssECI	CCNNGG	1 cut(s)	498
BssNAI	GTATAC	1 cut(s)	250
Bst1107I	GTATAC	1 cut(s)	250
Bst2UI	CCWGG	4 cut(s)	239, 311, 500, 564
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	65, 443, 510
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	99, 543, 547
BstDEI	CTNAG	3 cut(s)	108, 176, 396
BstF5I	GGATG	2 cut(s)	247, 322
BstMAI	GTCTC	2 cut(s)	25, 239
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	392, 478, 573, 662
BstNI	CCWGG	4 cut(s)	239, 311, 500, 564
BstSCI	CCNGG	4 cut(s)	237, 309, 498, 562
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	6 cut(s)	332, 373, 376, 379, 649, 652
BstV2I	GAAGAC	1 cut(s)	386
BstZ17I	GTATAC	1 cut(s)	250
BstZI	CGGCCG	1 cut(s)	88
BsuI	GTATCC	2 cut(s)	178, 397
BsuRI	GGCC	3 cut(s)	90, 507, 567
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	247, 322
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	99, 543, 547
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	340, 589
CviAII	CATG	4 cut(s)	60, 201, 458, 622
CviQI	GTAC	2 cut(s)	340, 589
DdeI	CTNAG	3 cut(s)	108, 176, 396
EaeI	YGGCCR	2 cut(s)	88, 505
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	3 cut(s)	65, 443, 510
EarI	CTCTTC	3 cut(s)	65, 443, 510
Ecl136II	GAGCTC	2 cut(s)	85, 173
EclXI	CGGCCG	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	87, 175
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	2 cut(s)	85, 173
Eco72I	CACGTG	1 cut(s)	14
EcoICRI	GAGCTC	2 cut(s)	85, 173
EcoRII	CCWGG	4 cut(s)	237, 309, 498, 562
EcoT38I	GRGCYC	2 cut(s)	87, 175
Esp3I	CGTCTC	2 cut(s)	25, 239
FaeI	CATG	4 cut(s)	63, 204, 461, 625
FaiI	YATR	9 cut(s)	61, 81, 202, 250, 459, 510, 551, 623, 670
FatI	CATG	4 cut(s)	59, 200, 457, 621
FauI	CCCGC	1 cut(s)	141
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	321, 387, 390, 393, 663, 666
FokI	GGATG	2 cut(s)	254, 329
FriOI	GRGCYC	2 cut(s)	87, 175
Fsp4HI	GCNGC	6 cut(s)	321, 387, 390, 393, 663, 666
GluI	GCNGC	6 cut(s)	321, 387, 390, 393, 663, 666
GsuI	CTGGAG	3 cut(s)	63, 617, 632
HaeIII	GGCC	3 cut(s)	90, 507, 567
HgaI	GACGC	1 cut(s)	470
Hin1II	CATG	4 cut(s)	63, 204, 461, 625
HindIII	AAGCTT	2 cut(s)	110, 470
HinfI	GANTC	2 cut(s)	17, 138
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	634
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	5 cut(s)	49, 353, 394, 593, 637
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	13, 34
HpyCH4V	TGCA	5 cut(s)	25, 101, 320, 549, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	392, 478, 573, 662
HpyF3I	CTNAG	3 cut(s)	108, 176, 396
HpySE526I	ACGT	2 cut(s)	13, 34
Hsp92II	CATG	4 cut(s)	63, 204, 461, 625
KpnI	GGTACC	1 cut(s)	343
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	2 cut(s)	328, 636
Lsp1109I	GCAGC	6 cut(s)	332, 373, 376, 379, 649, 652
LweI	GCATC	2 cut(s)	12, 307
MaeII	ACGT	2 cut(s)	13, 34
MaeIII	GTNAC	4 cut(s)	14, 191, 217, 452
MhlI	GDGCHC	2 cut(s)	87, 175
MluCI	AATT	2 cut(s)	363, 417
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	7 cut(s)	38, 57, 146, 268, 406, 430, 630
MseI	TTAA	1 cut(s)	330
MspR9I	CCNGG	4 cut(s)	239, 311, 500, 564
MvaI	CCWGG	4 cut(s)	239, 311, 500, 564
MwoI	GCNNNNNNNGC	4 cut(s)	392, 478, 573, 662
NlaIII	CATG	4 cut(s)	63, 204, 461, 625
NlaIV	GGNNCC	1 cut(s)	341
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	6 cut(s)	322, 388, 391, 394, 664, 667
PleI	GAGTC	1 cut(s)	11
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	14
Psp124BI	GAGCTC	2 cut(s)	87, 175
Psp6I	CCWGG	4 cut(s)	237, 309, 498, 562
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	4 cut(s)	237, 309, 498, 562
PspN4I	GGNNCC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	341, 590
RsaNI	GTAC	2 cut(s)	340, 589
SacI	GAGCTC	2 cut(s)	87, 175
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	6 cut(s)	321, 387, 390, 393, 663, 666
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	4 cut(s)	239, 311, 500, 564
SduI	GDGCHC	2 cut(s)	87, 175
SfaNI	GCATC	2 cut(s)	12, 307
SfcI	CTRYAG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	363, 417
SsiI	CCGC	1 cut(s)	148
SstI	GAGCTC	2 cut(s)	87, 175
StyD4I	CCNGG	4 cut(s)	237, 309, 498, 562
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	16, 37
TaqI	TCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	363, 417
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	6 cut(s)	320, 386, 389, 392, 662, 665
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	282, 638
TspGWI	ACGGA	2 cut(s)	131, 369
TspRI	CASTG	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 333
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.