Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

19395191 .. 19397950

Gene Structure 2760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTTATTTCTAGGGACTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGTCAGTCGACAAATACCAAGATCTCAAGCAACAAAACTTGGAGGGCCCTGAGATTGGATGCTGGGAACTTTTCTTGGGGTAGTGAGGCTGTTACTCGCAAGACTCGTATTCTTGATGTTGTTTACAATGCCTCAAACAACGAACTTGTTAGGACACAGACTCTTGTGAAGAGTGCAATTGTTCAGGTGGATGCTGCTCCTTTTAGGCAATGGTATCTACAGCACTACAATGTTGATATCGGGAGGAAGAAAAAGACAGCTGCAAAAAAGGATGCCAAGGATGCTGCTACGGAGGAGGCAGATGGCACCACAGAAGAAACCAAAAAGAGCAGCAATCTCCTGAGGAAGCTTGAGAAGCGCCAGAAAGATCGTACTCTTGATTCCCACATCGAAGAGCAATTTAGTGGTGGTAGGTTGTTGGCTTGCATTTCTTCCCGCCCAGGCCAATGTGGAAGATCTGATGGAATAGAGTTTTACATGAAGAAACTCCAGAGGAAGAAGGGAAAGGCAGCTGGTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

205

Amino Acids

23.21

Weight (kDa)

10.32

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 186	3.3e-40	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	526
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	5 cut(s)	59, 85, 350, 439, 602
AluI	AGCT	5 cut(s)	59, 85, 350, 439, 602
AoxI	GGCC	2 cut(s)	135, 532
ApaI	GGGCCC	1 cut(s)	139
ApeKI	GCWGC	7 cut(s)	284, 350, 374, 420, 599, 608, 611
AscI	GGCGCGCC	1 cut(s)	34
AspLEI	GCGC	3 cut(s)	36, 38, 450
AspS9I	GGNCC	2 cut(s)	135, 136
AxyI	CCTNAGG	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	139
BbvI	GCAGC	7 cut(s)	271, 337, 361, 432, 595, 598, 611
BccI	CCATC	2 cut(s)	386, 545
BciT130I	CCWGG	1 cut(s)	531
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	451
BglII	AGATCT	2 cut(s)	111, 545
BisI	GCNGC	7 cut(s)	285, 351, 375, 421, 600, 609, 612
BlsI	GCNGC	7 cut(s)	286, 352, 376, 422, 601, 610, 613
Bme1390I	CCNGG	1 cut(s)	531
BmgT120I	GGNCC	2 cut(s)	135, 136
BmiI	GGNNCC	2 cut(s)	137, 397
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	4 cut(s)	139, 271, 352, 361
BpmI	CTGGAG	1 cut(s)	563
BpuEI	CTTGAG	2 cut(s)	100, 461
BsaJI	CCNNGG	2 cut(s)	366, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	366, 529
BseGI	GGATG	4 cut(s)	154, 286, 367, 376
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	131, 422
BseNI	ACTGG	1 cut(s)	46
BsePI	GCGCGC	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	7 cut(s)	271, 337, 361, 432, 595, 598, 611
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	137, 534
BshNI	GGYRCC	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	137, 534
Bsp120I	GGGCCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	111, 457, 545
BspACI	CCGC	1 cut(s)	526
BspANI	GGCC	2 cut(s)	137, 534
BspCNI	CTCAG	2 cut(s)	132, 423
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	137, 397
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	366, 529
BssHII	GCGCGC	1 cut(s)	34
BssMI	GATC	3 cut(s)	111, 457, 545
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	531
Bst6I	CTCTTC	2 cut(s)	254, 477
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	36, 514
BstDEI	CTNAG	2 cut(s)	140, 431
BstF5I	GGATG	4 cut(s)	154, 286, 367, 376
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	3 cut(s)	36, 38, 450
BstKTI	GATC	3 cut(s)	114, 460, 548
BstMBI	GATC	3 cut(s)	111, 457, 545
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 371, 445, 605, 608
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	7 cut(s)	271, 337, 361, 432, 595, 598, 611
BstX2I	RGATCY	2 cut(s)	111, 545
BstYI	RGATCY	2 cut(s)	111, 545
Bsu36I	CCTNAGG	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	137, 534
BtsCI	GGATG	4 cut(s)	154, 286, 367, 376
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	36, 514
CfoI	GCGC	3 cut(s)	36, 38, 450
Cfr13I	GGNCC	2 cut(s)	135, 136
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	1 cut(s)	568
CviJI	RGCY	9 cut(s)	59, 85, 137, 179, 350, 439, 512, 534, 602
CviKI_1	RGCY	9 cut(s)	59, 85, 137, 179, 350, 439, 512, 534, 602
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	140, 431
DpnI	GATC	3 cut(s)	113, 459, 547
DpnII	GATC	3 cut(s)	111, 457, 545
Eam1104I	CTCTTC	2 cut(s)	254, 477
EarI	CTCTTC	2 cut(s)	254, 477
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	431
EcoO109I	RGGNCCY	2 cut(s)	135, 136
EcoRII	CCWGG	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	571
FaiI	YATR	4 cut(s)	23, 81, 569, 616
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	567
FauI	CCCGC	1 cut(s)	533
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	7 cut(s)	285, 351, 375, 421, 600, 609, 612
FokI	GGATG	4 cut(s)	161, 293, 374, 383
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	7 cut(s)	285, 351, 375, 421, 600, 609, 612
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	3 cut(s)	35, 37, 449
GluI	GCNGC	7 cut(s)	285, 351, 375, 421, 600, 609, 612
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	563
HaeII	RGCGCY	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	137, 534
HhaI	GCGC	3 cut(s)	36, 38, 450
Hin1II	CATG	1 cut(s)	571
Hin6I	GCGC	3 cut(s)	34, 36, 448
HinP1I	GCGC	3 cut(s)	34, 36, 448
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	57, 437
HinfI	GANTC	4 cut(s)	17, 193, 250, 470
Hpy166II	GTNNAC	2 cut(s)	99, 214
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	5 cut(s)	203, 331, 430, 467, 580
Hpy8I	GTNNAC	2 cut(s)	99, 214
HpyAV	CCTTC	1 cut(s)	583
HpyCH4V	TGCA	5 cut(s)	25, 266, 353, 516, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 371, 445, 605, 608
HpyF3I	CTNAG	2 cut(s)	140, 431
Hsp92II	CATG	1 cut(s)	571
HspAI	GCGC	3 cut(s)	34, 36, 448
Kzo9I	GATC	3 cut(s)	111, 457, 545
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	7 cut(s)	271, 337, 361, 432, 595, 598, 611
LweI	GCATC	4 cut(s)	139, 271, 352, 361
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	113, 459, 547
MboI	GATC	3 cut(s)	111, 457, 545
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	2 cut(s)	111, 545
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	2 cut(s)	267, 488
MlyI	GAGTC	3 cut(s)	11, 187, 244
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	350, 602
MspR9I	CCNGG	1 cut(s)	531
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	5 cut(s)	31, 371, 445, 605, 608
NdeII	GATC	3 cut(s)	111, 457, 545
NlaIII	CATG	1 cut(s)	571
NlaIV	GGNNCC	2 cut(s)	137, 397
PalAI	GGCGCGCC	1 cut(s)	34
PauI	GCGCGC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	7 cut(s)	286, 352, 376, 422, 601, 610, 613
PleI	GAGTC	3 cut(s)	11, 187, 244
PpsI	GAGTC	3 cut(s)	11, 187, 244
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	137, 397
PspOMI	GGGCCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	135, 136
PsuI	RGATCY	2 cut(s)	111, 545
PteI	GCGCGC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	350, 602
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	97
SapI	GCTCTTC	1 cut(s)	477
SatI	GCNGC	7 cut(s)	285, 351, 375, 421, 600, 609, 612
Sau3AI	GATC	3 cut(s)	111, 457, 545
Sau96I	GGNCC	2 cut(s)	135, 136
SchI	GAGTC	3 cut(s)	11, 187, 244
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	7 cut(s)	61, 87, 279, 352, 441, 506, 604
SfaNI	GCATC	4 cut(s)	139, 271, 352, 361
SfcI	CTRYAG	1 cut(s)	308
SgsI	GGCGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	115, 440
SmoI	CTYRAG	2 cut(s)	115, 440
Sse9I	AATT	2 cut(s)	267, 488
SsiI	CCGC	1 cut(s)	526
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	366
TaqI	TCGA	2 cut(s)	98, 480
TasI	AATT	2 cut(s)	267, 488
TfiI	GAWTC	1 cut(s)	470
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	7 cut(s)	284, 350, 374, 420, 599, 608, 611
TspDTI	ATGAA	1 cut(s)	584
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.