Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

14748245 .. 14750617

Gene Structure 2373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G230200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGTATTTCCCGAGATTCCATGCACAAGAGACGTGCCACTGGAGGCAAGAAGAAGGCATGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTGCAAACACAAAGTTGTCAAGCAACAAGACAGTGAGGAGAATCAGAGTACGAGGTGGGAATGTGAAGTGGCGTGCTCTGAGGCTCGACACAGGAAATTTCTCATGGGGTAGTGAGGCTGTGACCCGCAAAACCCGTCTTCTTGATGTCGTGTACAATGCATCTAACAATGAGCTGGTCCGTACTCAAACTTTGGTGAAGGGTGCCATTGTTCAGGTTGATGCTGCACCATTCAAGCAGTGGTATCTCCAGCACTACGGAGTTGAAATTGGCCGCAAGAAGAAAACTGCAGCTGCTGCCAAGAAAGAAGGAGAGGAAGGTGATGCTGCTGCTGCTCCTGCTGCCGTCGCTGAGGAGGTGAAGAAGAGCAACCATGTAGTAAGAAAGTTGGAGAAGCGTCAACAGAGTCGCACCCTTGACCAGCATATTGAAGAGCAATTTGGTGGTGGTCGTCTATTGGCTTGTATCTCATCACGACCTGGACAGTGTGGCCGTTCTGATGGATATATATTGGAGGGCAAAGAGCTGGAATTTTACATGAAGAAGCTCCAGAGGAAGAAGGGGAAGGGTGCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

226

Amino Acids

25.22

Weight (kDa)

10.47

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	2 cut(s)	223, 370
AcoI	YGGCCR	2 cut(s)	367, 586
AcsI	RAATTY	2 cut(s)	193, 626
AfaI	GTAC	3 cut(s)	147, 251, 280
AgsI	TTSAA	3 cut(s)	331, 362, 527
AjiI	CACGTC	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	5 cut(s)	85, 271, 389, 622, 643
AluI	AGCT	5 cut(s)	85, 271, 389, 622, 643
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	25
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	2 cut(s)	367, 586
ApoI	RAATTY	2 cut(s)	193, 626
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	304, 428, 466
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	175
BbvCI	CCTCAGC	1 cut(s)	447
BccI	CCATC	1 cut(s)	590
BceAI	ACGGC	2 cut(s)	425, 573
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	25
BfmI	CTRYAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	266, 307, 409
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	3 cut(s)	63, 329, 629
Bpu10I	CCTNAGC	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	167, 438
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	2 cut(s)	148, 464
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	369, 588
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	369, 588
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	249
BspACI	CCGC	2 cut(s)	223, 370
BspANI	GGCC	2 cut(s)	369, 588
BspCNI	CTCAG	2 cut(s)	168, 439
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	106
BspQI	GCTCTTC	2 cut(s)	455, 522
BspT107I	GGYRCC	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	130, 582
Bst6I	CTCTTC	3 cut(s)	65, 455, 522
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	176, 447, 675
BstMAI	GTCTC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 392, 428, 434, 437, 443
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	369, 588
BtrI	CACGTC	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	4 cut(s)	39, 135, 341, 587
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	274
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	3 cut(s)	146, 250, 279
CviAII	CATG	5 cut(s)	22, 60, 201, 470, 634
CviQI	GTAC	3 cut(s)	146, 250, 279
DdeI	CTNAG	3 cut(s)	176, 447, 675
EaeI	YGGCCR	2 cut(s)	367, 586
Eam1104I	CTCTTC	3 cut(s)	65, 455, 522
EarI	CTCTTC	3 cut(s)	65, 455, 522
Eco47I	GGWCC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	5 cut(s)	25, 63, 204, 473, 637
FaiI	YATR	9 cut(s)	23, 61, 81, 202, 471, 522, 603, 605, 635
FatI	CATG	5 cut(s)	21, 59, 200, 469, 633
FauI	CCCGC	1 cut(s)	230
GsuI	CTGGAG	3 cut(s)	63, 329, 629
HaeIII	GGCC	2 cut(s)	369, 588
HgaI	GACGC	1 cut(s)	482
Hin1II	CATG	5 cut(s)	25, 63, 204, 473, 637
HincII	GTYRAC	1 cut(s)	497
HindII	GTYRAC	1 cut(s)	497
HinfI	GANTC	3 cut(s)	17, 138, 502
HphI	GGTGA	3 cut(s)	304, 428, 466
Hpy166II	GTNNAC	2 cut(s)	250, 497
Hpy188I	TCNGA	3 cut(s)	143, 177, 595
Hpy188III	TCNNGA	4 cut(s)	12, 239, 570, 646
Hpy8I	GTNNAC	2 cut(s)	250, 497
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	7 cut(s)	49, 84, 289, 398, 407, 649, 655
HpyCH4III	ACNGT	2 cut(s)	130, 582
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	25, 101, 257, 323, 386
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 392, 428, 434, 437, 443
HpyF3I	CTNAG	3 cut(s)	176, 447, 675
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	5 cut(s)	25, 63, 204, 473, 637
LguI	GCTCTTC	2 cut(s)	455, 522
LmnI	GCTCC	2 cut(s)	436, 648
LweI	GCATC	3 cut(s)	266, 307, 409
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	4 cut(s)	193, 363, 533, 626
MlyI	GAGTC	1 cut(s)	511
MmeI	TCCRAC	1 cut(s)	465
Mph1103I	ATGCAT	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	6 cut(s)	91, 392, 428, 434, 437, 443
NlaIII	CATG	5 cut(s)	25, 63, 204, 473, 637
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	259
PciSI	GCTCTTC	2 cut(s)	455, 522
PfeI	GAWTC	2 cut(s)	17, 138
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	3 cut(s)	147, 251, 280
RsaNI	GTAC	3 cut(s)	146, 250, 279
SapI	GCTCTTC	2 cut(s)	455, 522
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	3 cut(s)	266, 307, 409
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	4 cut(s)	193, 363, 533, 626
SsiI	CCGC	2 cut(s)	223, 370
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	2 cut(s)	130, 582
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	193, 363, 533, 626
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	17, 138
TscAI	CASTG	4 cut(s)	46, 135, 341, 587
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	650
TspGWI	ACGGA	2 cut(s)	266, 369
TspRI	CASTG	4 cut(s)	46, 135, 341, 587
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	2 cut(s)	193, 626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.