Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Forward (+)

33098045 .. 33101194

Gene Structure 3150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG166300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGTATCTCACGTGACTCGATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTCGGTCGTCAGCCTGCAAACACTAAGCTTTCAAGCAACAAGACTGTGAGGCGAATCCGTGTCCGAGGAGGTAATGTGAAGTGGAGGGCTCTCAGGTTGGACACCGGCAACTTTTCATGGGGTAGTGAAGCTGTTACTCGTAAAACACGTCTTCTGGATGTGGTTTACAATGCCTCAAACAATGAACTTGTTCGAACACAAACCCTTGTCAAAGGTGCAATTGTCCAAGTTGATGCAGCCCCTTTTAGGCAATGGTACCTTCAGCACTACAATGTTGAGGTTGGGAAAAAGAAAAAGATTGCTGCTGCTAAGAAGGATACTTCAGAGGAGGCAGAAGCAGCTCCTGTGGAGGAGGCAAAGAAGAGTAATCATCTAACCAGAAAGATTGAGAAGCGTGTGCAAGTTCGTACACTGGACTCCCACATTGAAGAGCAGTTTGGGGGTGGTAGATTGTTGGCCTGCATATCTTCCCGTCCTGGACAATGTGGAAGAGCTGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

195

Amino Acids

22.02

Weight (kDa)

10.64

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 195	1.9e-51	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	339
AcuI	CTGAAG	2 cut(s)	329, 390
AcvI	CACGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	341, 493
AfiI	CCNNNNNNNGG	1 cut(s)	330
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	117, 512
AjiI	CACGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	559
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	5 cut(s)	85, 112, 215, 425, 578
AluI	AGCT	5 cut(s)	85, 112, 215, 425, 578
Alw21I	GWGCWC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	4 cut(s)	320, 386, 389, 422
Asp700I	GAANNNNTTC	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	339
AsuII	TTCGAA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	339
BanII	GRGCYC	2 cut(s)	87, 175
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	332, 373, 376, 434
BccI	CCATC	1 cut(s)	575
BciT130I	CCWGG	1 cut(s)	561
BciVI	GTATCC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	4 cut(s)	321, 387, 390, 423
BlsI	GCNGC	4 cut(s)	322, 388, 391, 424
Bme1390I	CCNGG	1 cut(s)	561
BmgBI	CACGTC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	2 cut(s)	12, 307
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	46, 501
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	46, 501
BseRI	GAGGAG	3 cut(s)	165, 425, 449
BseXI	GCAGC	4 cut(s)	332, 373, 376, 434
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	330
BsnI	GGCC	1 cut(s)	542
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	87, 175
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	341
BspQI	GCTCTTC	2 cut(s)	507, 568
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	46, 501
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	4 cut(s)	65, 440, 507, 568
BstBAI	YACGTR	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	36, 99, 544
BstDEI	CTNAG	3 cut(s)	108, 176, 393
BstF5I	GGATG	1 cut(s)	247
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 422
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstV1I	GCAGC	4 cut(s)	332, 373, 376, 434
BstV2I	GAAGAC	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	542
BtrI	CACGTC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	39, 494
Cac8I	GCNNGC	3 cut(s)	36, 99, 544
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	340, 492
CviAII	CATG	1 cut(s)	201
CviQI	GTAC	2 cut(s)	340, 492
DdeI	CTNAG	3 cut(s)	108, 176, 393
Eam1104I	CTCTTC	4 cut(s)	65, 440, 507, 568
EarI	CTCTTC	4 cut(s)	65, 440, 507, 568
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	87, 175
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	329, 390
Eco72I	CACGTG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	559
EcoT38I	GRGCYC	2 cut(s)	87, 175
FaeI	CATG	1 cut(s)	204
FaiI	YATR	3 cut(s)	81, 202, 548
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	4 cut(s)	321, 387, 390, 423
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	2 cut(s)	87, 175
Fsp4HI	GCNGC	4 cut(s)	321, 387, 390, 423
GluI	GCNGC	4 cut(s)	321, 387, 390, 423
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	17, 138, 500
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	250, 494
Hpy188I	TCNGA	2 cut(s)	149, 409
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	2 cut(s)	250, 494
HpyAV	CCTTC	3 cut(s)	49, 353, 391
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	13, 232
HpyCH4V	TGCA	6 cut(s)	25, 101, 302, 320, 484, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 422
HpyF3I	CTNAG	3 cut(s)	108, 176, 393
HpySE526I	ACGT	2 cut(s)	13, 232
Hsp92II	CATG	1 cut(s)	204
KpnI	GGTACC	1 cut(s)	343
LguI	GCTCTTC	2 cut(s)	507, 568
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	4 cut(s)	332, 373, 376, 434
LweI	GCATC	2 cut(s)	12, 307
MaeII	ACGT	2 cut(s)	13, 232
MaeIII	GTNAC	2 cut(s)	14, 217
MboII	GAAGA	8 cut(s)	64, 79, 82, 227, 457, 524, 543, 585
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	87, 175
MluCI	AATT	1 cut(s)	303
MlyI	GAGTC	2 cut(s)	11, 494
MmeI	TCCRAC	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	561
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	2 cut(s)	31, 422
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	277
PciSI	GCTCTTC	2 cut(s)	507, 568
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	4 cut(s)	322, 388, 391, 424
PleI	GAGTC	2 cut(s)	11, 494
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	2 cut(s)	11, 494
Ppu21I	YACGTR	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	559
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	341
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	2 cut(s)	341, 493
RsaNI	GTAC	2 cut(s)	340, 492
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	2 cut(s)	507, 568
SatI	GCNGC	4 cut(s)	321, 387, 390, 423
SchI	GAGTC	2 cut(s)	11, 494
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	2 cut(s)	87, 175
SfaNI	GCATC	2 cut(s)	12, 307
SfuI	TTCGAA	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	16, 235
TaqI	TCGA	2 cut(s)	20, 277
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	138
TscAI	CASTG	2 cut(s)	46, 501
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	4 cut(s)	320, 386, 389, 422
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	189, 282
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	46, 501
XmnI	GAANNNNTTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.