Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Forward (+)

24839345 .. 24841079

Gene Structure 1735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGTATTTCCAGGGACTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGTCAGCCGGCAAATACCAAGATCTCGAGCAACAAAACTGTAAGGAGAATTCGTGTTAGAGGTGCCAATGTGAAGTGGAAGGCCCTGAGATTGGATACTGGGAACTTTTCTTGGGGTAGTGAGGCTGTTACTCGCAAGACTCGTATTCTTGATGTCGTTTACAATGCCTCAAACAACGAACTTGTTAGGACACAGACTCTTGTGAAGAGTGCAATTGTTCAGGTGGATGCTGCTCCTTTTAGGCAATGGTATCTACAGCACTACAATGTTGATATCGGGAGGAAGAAAAAGACAGCTGTAAAAAAGGATGCCAAGGATGCTGTTACAGAGGAGGCAGATGGCACCACAGAAGAAACCAAAAAGAGCAGCAATCTCCTGAGGAAGCTTGAGAAGCGCCAGAAAGATCGTACTCTTGATTCCCACATCGAAGAGCAGTTTAGTGGTGGTAGGTTGTTGGCTTGCATTTCTTCCCGCCCCGGCCAATGTGGAAGATCTGATGGGTACATTTTGGAGGGGAAAGAATTAGAGTTTTACATGAAGAAACTCCAGAGGAAGAAGGGAAAGGCAGCTGGTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

224

Amino Acids

25.43

Weight (kDa)

10.39

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	5 - 200	3.1e-52	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	152, 431
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	562
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	2 cut(s)	499, 593
AfiI	CCNNNNNNNGG	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	5 cut(s)	59, 85, 386, 475, 659
AluI	AGCT	5 cut(s)	59, 85, 386, 475, 659
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	171, 568
ApeKI	GCWGC	5 cut(s)	320, 456, 656, 665, 668
ApoI	RAATTY	1 cut(s)	138
AscI	GGCGCGCC	1 cut(s)	34
AspLEI	GCGC	3 cut(s)	36, 38, 486
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	567
AvaI	CYCGRG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	467
BanI	GGYRCC	2 cut(s)	152, 431
BbvI	GCAGC	5 cut(s)	307, 468, 652, 655, 668
BccI	CCATC	2 cut(s)	422, 581
BciT130I	CCWGG	1 cut(s)	13
BciVI	GTATCC	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	178
BglII	AGATCT	2 cut(s)	111, 581
BisI	GCNGC	5 cut(s)	321, 457, 657, 666, 669
BlsI	GCNGC	5 cut(s)	322, 458, 658, 667, 670
Bme1390I	CCNGG	2 cut(s)	13, 567
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	154, 433
BmrFI	CCNGG	2 cut(s)	13, 567
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	307, 388, 397
BmuI	ACTGGG	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	620
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	12, 402, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	46, 193
Bse21I	CCTNAGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	12, 402, 565
BseGI	GGATG	3 cut(s)	322, 403, 412
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	2 cut(s)	167, 458
BseNI	ACTGG	2 cut(s)	46, 193
BsePI	GCGCGC	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	5 cut(s)	307, 468, 652, 655, 668
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	173, 570
BshNI	GGYRCC	2 cut(s)	152, 431
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	98, 567
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	173, 570
BsoBI	CYCGRG	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	111, 493, 581
BspACI	CCGC	1 cut(s)	562
BspANI	GGCC	2 cut(s)	173, 570
BspCNI	CTCAG	2 cut(s)	168, 459
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	154, 433
BspQI	GCTCTTC	1 cut(s)	513
BspT107I	GGYRCC	2 cut(s)	152, 431
BsrDI	GCAATG	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	46, 193
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	12, 402, 565
BssHII	GCGCGC	1 cut(s)	34
BssMI	GATC	3 cut(s)	111, 493, 581
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	290, 513
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	36, 99, 550
BstDEI	CTNAG	2 cut(s)	176, 467
BstF5I	GGATG	3 cut(s)	322, 403, 412
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	3 cut(s)	36, 38, 486
BstKTI	GATC	3 cut(s)	114, 496, 584
BstMBI	GATC	3 cut(s)	111, 493, 581
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 407, 481, 662, 665
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	11, 565
BstSFI	CTRYAG	1 cut(s)	344
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	5 cut(s)	307, 468, 652, 655, 668
BstX2I	RGATCY	2 cut(s)	111, 581
BstYI	RGATCY	2 cut(s)	111, 581
Bsu36I	CCTNAGG	1 cut(s)	467
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	173, 570
BtsCI	GGATG	3 cut(s)	322, 403, 412
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	36, 99, 550
CfoI	GCGC	3 cut(s)	36, 38, 486
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	498, 592
CviAII	CATG	1 cut(s)	625
CviQI	GTAC	2 cut(s)	498, 592
DdeI	CTNAG	2 cut(s)	176, 467
DpnI	GATC	3 cut(s)	113, 495, 583
DpnII	GATC	3 cut(s)	111, 493, 581
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	290, 513
EarI	CTCTTC	2 cut(s)	290, 513
Eco130I	CCWWGG	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	11
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	628
FaiI	YATR	4 cut(s)	23, 81, 626, 673
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	624
FauI	CCCGC	1 cut(s)	569
Fnu4HI	GCNGC	5 cut(s)	321, 457, 657, 666, 669
FokI	GGATG	3 cut(s)	329, 410, 419
Fsp4HI	GCNGC	5 cut(s)	321, 457, 657, 666, 669
GlaI	GCGC	3 cut(s)	35, 37, 485
GluI	GCNGC	5 cut(s)	321, 457, 657, 666, 669
GsuI	CTGGAG	1 cut(s)	620
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	173, 570
HapII	CCGG	2 cut(s)	98, 567
HhaI	GCGC	3 cut(s)	36, 38, 486
Hin1II	CATG	1 cut(s)	628
Hin6I	GCGC	3 cut(s)	34, 36, 484
HinP1I	GCGC	3 cut(s)	34, 36, 484
HindIII	AAGCTT	2 cut(s)	57, 473
HinfI	GANTC	4 cut(s)	17, 229, 286, 506
HpaII	CCGG	2 cut(s)	98, 567
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	586
Hpy188III	TCNNGA	6 cut(s)	115, 239, 367, 466, 503, 637
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	163, 640
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	25, 302, 552, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 407, 481, 662, 665
HpyF3I	CTNAG	2 cut(s)	176, 467
Hsp92II	CATG	1 cut(s)	628
HspAI	GCGC	3 cut(s)	34, 36, 484
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	111, 493, 581
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	5 cut(s)	307, 468, 652, 655, 668
LweI	GCATC	3 cut(s)	307, 388, 397
MaeIII	GTNAC	2 cut(s)	217, 412
MalI	GATC	3 cut(s)	113, 495, 583
MboI	GATC	3 cut(s)	111, 493, 581
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	2 cut(s)	111, 581
MluCI	AATT	3 cut(s)	138, 303, 611
MlyI	GAGTC	3 cut(s)	11, 223, 280
MroNI	GCCGGC	1 cut(s)	97
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	386, 659
MspI	CCGG	2 cut(s)	98, 567
MspR9I	CCNGG	2 cut(s)	13, 567
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	5 cut(s)	31, 407, 481, 662, 665
NaeI	GCCGGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	3 cut(s)	111, 493, 581
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	628
NlaIV	GGNNCC	2 cut(s)	154, 433
PaeR7I	CTCGAG	1 cut(s)	115
PalAI	GGCGCGCC	1 cut(s)	34
PauI	GCGCGC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	322, 458, 658, 667, 670
PleI	GAGTC	3 cut(s)	11, 223, 280
PpsI	GAGTC	3 cut(s)	11, 223, 280
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	154, 433
PspPI	GGNCC	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	111, 581
PteI	GCGCGC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	386, 659
RsaI	GTAC	2 cut(s)	499, 593
RsaNI	GTAC	2 cut(s)	498, 592
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	513
SatI	GCNGC	5 cut(s)	321, 457, 657, 666, 669
Sau3AI	GATC	3 cut(s)	111, 493, 581
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	3 cut(s)	11, 223, 280
ScrFI	CCNGG	2 cut(s)	13, 567
SetI	ASST	8 cut(s)	61, 87, 154, 315, 388, 477, 542, 661
SfaNI	GCATC	3 cut(s)	307, 388, 397
SfcI	CTRYAG	1 cut(s)	344
Sfr274I	CTCGAG	1 cut(s)	115
SgsI	GGCGCGCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	115, 476
SmoI	CTYRAG	2 cut(s)	115, 476
Sse9I	AATT	3 cut(s)	138, 303, 611
SsiI	CCGC	1 cut(s)	562
StyD4I	CCNGG	2 cut(s)	11, 565
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	116, 516
TasI	AATT	3 cut(s)	138, 303, 611
TfiI	GAWTC	1 cut(s)	506
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	5 cut(s)	320, 456, 656, 665, 668
TspDTI	ATGAA	1 cut(s)	641
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.