Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Forward (+)

20230000 .. 20231951

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17960.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGTATTTCTCGAGATTCCATGCACAAGAGACGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGCGAAAGTACGAGCTCGGTAGGCAACCTGCTAACACCAAGTTGTCAAGCAACAAGACTGTGAGGAGGATCAGGGTTCGAGGTGGAAATGTTAAGTGGCGTGCTTTGAGGCTTGACACTGGAAATTTCTCCTGGGGTAGCGAGGCCGTGACCCGCAAAACCCGTCTTCTTGATGTTGTGTACAATGCATCTAACAATGAGTTGGTCCGTACTCAAACTTTGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTGGTACCTCCAGCACTATGGAGTTGAAATTGGCCGCAAGAAGAAAACTGCTGCCGCTGCAAAGAAAGAAGCAGAGGATGGTGAGGCACCTGCTGCTGCTGCTGCTGCTGCTGCTGAGGAGGCAAAGAAGAGCAACCATGTAGCCAGAAAGCTGGAGAAGCGTCAACAGACTCGCACCTTGGACCAGCATATTGAAGAACAATTTGGCGGTGGTCGTCTGTTGGCTTGTATTTCATCACGACCTGGTCAGTGTGGCCGTTGCGATGGATATATCTTGGAGGGCAGAGAGCTGGAGTTCTACATGAAGAAGCTCCAGAGGAAGAAGGGGAAGGGAGCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

227

Amino Acids

25.31

Weight (kDa)

10.46

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	2 cut(s)	106, 433
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	2 cut(s)	339, 421
AciI	CCGC	4 cut(s)	223, 370, 390, 543
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	2 cut(s)	367, 589
AcsI	RAATTY	1 cut(s)	193
AfaI	GTAC	4 cut(s)	80, 251, 280, 341
AgsI	TTSAA	3 cut(s)	331, 362, 530
AjiI	CACGTC	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	200, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	5 cut(s)	85, 487, 625, 646, 671
AluI	AGCT	5 cut(s)	85, 487, 625, 646, 671
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	3 cut(s)	213, 367, 589
ApoI	RAATTY	1 cut(s)	193
Asp718I	GGTACC	1 cut(s)	339
AspS9I	GGNCC	2 cut(s)	274, 517
AsuHPI	GGTGA	2 cut(s)	304, 428
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	274, 517
BanI	GGYRCC	2 cut(s)	339, 421
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	407, 593
BceAI	ACGGC	2 cut(s)	200, 576
BciT130I	CCWGG	2 cut(s)	202, 579
BcoDI	GTCTC	1 cut(s)	25
BfuAI	ACCTGC	2 cut(s)	106, 433
Bme1390I	CCNGG	2 cut(s)	202, 579
Bme18I	GGWCC	2 cut(s)	274, 517
BmeT110I	CYCGRG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	274, 517
BmiI	GGNNCC	2 cut(s)	341, 423
BmrFI	CCNGG	2 cut(s)	202, 579
BmsI	GCATC	2 cut(s)	266, 307
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	5 cut(s)	63, 329, 509, 632, 647
Bpu10I	CCTNAGC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	201, 513
Bse1I	ACTGG	2 cut(s)	46, 193
BseBI	CCWGG	2 cut(s)	202, 579
BseDI	CCNNGG	2 cut(s)	201, 513
BseGI	GGATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	46, 193
BseRI	GAGGAG	2 cut(s)	148, 467
BshFI	GGCC	3 cut(s)	215, 369, 591
BshNI	GGYRCC	2 cut(s)	339, 421
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	215, 369, 591
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	4 cut(s)	223, 370, 390, 543
BspANI	GGCC	3 cut(s)	215, 369, 591
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	341, 423
BspMI	ACCTGC	2 cut(s)	106, 433
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	458
BspT107I	GGYRCC	2 cut(s)	339, 421
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	46, 193
BssECI	CCNNGG	2 cut(s)	201, 513
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	202, 579
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	290, 458
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	138
BstNI	CCWGG	2 cut(s)	202, 579
BstSCI	CCNGG	2 cut(s)	200, 577
BstV2I	GAAGAC	1 cut(s)	227
BstXI	CCANNNNNNTGG	2 cut(s)	353, 487
BsuRI	GGCC	3 cut(s)	215, 369, 591
BtgZI	GCGATG	1 cut(s)	612
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	4 cut(s)	39, 186, 341, 590
BveI	ACCTGC	2 cut(s)	106, 433
Cac8I	GCNNGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	274, 517
CseI	GACGC	1 cut(s)	485
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	4 cut(s)	79, 250, 279, 340
CviAII	CATG	3 cut(s)	22, 473, 637
CviQI	GTAC	4 cut(s)	79, 250, 279, 340
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	367, 589
Eam1104I	CTCTTC	2 cut(s)	290, 458
EarI	CTCTTC	2 cut(s)	290, 458
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	274, 517
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	200, 577
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	25, 476, 640
FaiI	YATR	6 cut(s)	23, 354, 474, 525, 606, 638
FatI	CATG	3 cut(s)	21, 472, 636
FauI	CCCGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	87
GsuI	CTGGAG	5 cut(s)	63, 329, 509, 632, 647
HaeIII	GGCC	3 cut(s)	215, 369, 591
HgaI	GACGC	1 cut(s)	485
Hin1II	CATG	3 cut(s)	25, 476, 640
HincII	GTYRAC	1 cut(s)	500
HindII	GTYRAC	1 cut(s)	500
HinfI	GANTC	2 cut(s)	17, 505
HphI	GGTGA	2 cut(s)	304, 428
Hpy166II	GTNNAC	2 cut(s)	250, 500
Hpy188III	TCNNGA	5 cut(s)	12, 14, 239, 573, 649
Hpy8I	GTNNAC	2 cut(s)	250, 500
HpyAV	CCTTC	3 cut(s)	49, 652, 658
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	25, 257, 320, 395
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	25, 476, 640
KpnI	GGTACC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	138
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	651, 668
LweI	GCATC	2 cut(s)	266, 307
MabI	ACCWGGT	1 cut(s)	577
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	9 cut(s)	64, 79, 227, 307, 388, 475, 542, 652, 667
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	193, 363, 536
MlyI	GAGTC	1 cut(s)	499
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	2 cut(s)	162, 679
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	202, 579
MvaI	CCWGG	2 cut(s)	202, 579
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	3 cut(s)	25, 476, 640
NlaIV	GGNNCC	2 cut(s)	341, 423
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	579
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	200, 577
PspGI	CCWGG	2 cut(s)	200, 577
PspN4I	GGNNCC	2 cut(s)	341, 423
PspPI	GGNCC	2 cut(s)	274, 517
PsyI	GACNNNGTC	1 cut(s)	579
RsaI	GTAC	4 cut(s)	80, 251, 280, 341
RsaNI	GTAC	4 cut(s)	79, 250, 279, 340
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	162, 679
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	274, 517
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	2 cut(s)	202, 579
SduI	GDGCHC	1 cut(s)	87
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	2 cut(s)	266, 307
Sfr274I	CTCGAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	274, 517
SlaI	CTCGAG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	193, 363, 536
SsiI	CCGC	4 cut(s)	223, 370, 390, 543
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	200, 577
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	13, 148
TasI	AATT	3 cut(s)	193, 363, 536
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	372, 392
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	162, 679
Tru9I	TTAA	2 cut(s)	162, 679
TscAI	CASTG	4 cut(s)	46, 193, 341, 590
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	558, 653
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	4 cut(s)	46, 193, 341, 590
Tth111I	GACNNNGTC	1 cut(s)	579
VpaK11BI	GGWCC	2 cut(s)	274, 517
XapI	RAATTY	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.