Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Reverse (-)

1749550 .. 1751731

Gene Structure 2182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01980.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGTATCTCACGTGACTCGATGCACAAGCGCCGTGCTACTGGAGGCAAGAAGAAGGCATGGAGGAAGAAGAGAAAGTATGAGCTCGGCCGTCAGCCTGCAAATACTAAGCTCTCCAGCAACAAGACTGTAAGGAGAATCCGTGTGCGAGGAGGCAATGTCAAATGGAGAGCTCTCAGGTTGGATACTGGGAACTTCTCGTGGGGCAGTGAAGCCGTTACTCGCAAAACCCGTCTCCTGGATGTTGTATACAATGCGTCAAACAATGAGCTTGTTAGAACACAAACTCTGGTGAAAAGCGCCATTGTGCAGGTGGATGCAGCTCCATTTAAGCAATGGTACCTCCAGCATTATGGAGTTGAAATTGGTAGAAAGAAGAAGTCTGCTGTTGCTAAGAAGGATACCCCAGAGGAAGGAGAAGGAACTACAGAGGAAGCAAAGAAGAGTAATCATGTTGCCAGGAAACTTGAGAAACGTCAGCAAGGTCGCACTCTAGACCCCCATATTGAAGAGCAGTTTGGAGGTGGGAGATTGCTGGCTTGCATATCTTCCCGTCCAGGCCAATGTGGCAGATGTGATGGGTACATCTTGGAGGGTAAGGAACTTGAGTTTTACATGAAGAAGCTCCAGAGGAAGAAGGGAAAAGGTGCTGGCGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

222

Amino Acids

24.93

Weight (kDa)

10.41

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
Acc36I	ACCTGC	1 cut(s)	301
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	88
AcvI	CACGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	341, 584
AfiI	CCNNNNNNNGG	2 cut(s)	238, 413
AgsI	TTSAA	2 cut(s)	362, 509
AjnI	CCWGG	3 cut(s)	237, 458, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	6 cut(s)	85, 112, 173, 271, 323, 625
AluI	AGCT	6 cut(s)	85, 112, 173, 271, 323, 625
Alw21I	GWGCWC	2 cut(s)	87, 175
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	88, 559
ApeKI	GCWGC	3 cut(s)	320, 656, 659
Asp718I	GGTACC	1 cut(s)	339
AspLEI	GCGC	3 cut(s)	33, 302, 656
AsuHPI	GGTGA	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	339
BanII	GRGCYC	2 cut(s)	87, 175
BauI	CACGAG	1 cut(s)	199
BbrPI	CACGTG	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	87, 175
BbvI	GCAGC	3 cut(s)	332, 643, 646
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	3 cut(s)	18, 75, 200
BciT130I	CCWGG	3 cut(s)	239, 460, 558
BciVI	GTATCC	2 cut(s)	178, 394
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	3 cut(s)	34, 303, 657
BfuAI	ACCTGC	1 cut(s)	301
BfuI	GTATCC	2 cut(s)	178, 394
BglI	GCCNNNNNGGC	1 cut(s)	567
BisI	GCNGC	3 cut(s)	321, 657, 660
BlsI	GCNGC	3 cut(s)	322, 658, 661
Bme1390I	CCNGG	3 cut(s)	239, 460, 558
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	3 cut(s)	239, 460, 558
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	12, 307
BmuI	ACTGGG	1 cut(s)	198
BpmI	CTGGAG	4 cut(s)	63, 100, 329, 611
BpuEI	CTTGAG	2 cut(s)	488, 626
BsaAI	YACGTR	1 cut(s)	14
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 144, 157, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 413
Bse1I	ACTGG	2 cut(s)	46, 193
Bse3DI	GCAATG	2 cut(s)	163, 341
BseBI	CCWGG	3 cut(s)	239, 460, 558
BseGI	GGATG	2 cut(s)	247, 322
BseLI	CCNNNNNNNGG	2 cut(s)	238, 413
BseMI	GCAATG	2 cut(s)	163, 341
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	46, 193
BseRI	GAGGAG	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	332, 643, 646
BsgI	GTGCAG	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	90, 561
BshNI	GGYRCC	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	2 cut(s)	87, 175
BslI	CCNNNNNNNGG	2 cut(s)	238, 413
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	90, 561
Bsp1286I	GDGCHC	2 cut(s)	87, 175
BspANI	GGCC	2 cut(s)	90, 561
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	341
BspMI	ACCTGC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	2 cut(s)	163, 341
BsrI	ACTGG	2 cut(s)	46, 193
BssNAI	GTATAC	1 cut(s)	250
BssSI	CACGAG	1 cut(s)	199
Bst1107I	GTATAC	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	199
Bst2UI	CCWGG	3 cut(s)	239, 460, 558
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	65, 437, 504
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	99, 537, 541, 652
BstDEI	CTNAG	3 cut(s)	108, 176, 393
BstF5I	GGATG	2 cut(s)	247, 322
BstH2I	RGCGCY	3 cut(s)	34, 303, 657
BstHHI	GCGC	3 cut(s)	33, 302, 656
BstMAI	GTCTC	1 cut(s)	239
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	567, 656
BstNI	CCWGG	3 cut(s)	239, 460, 558
BstSCI	CCNGG	3 cut(s)	237, 458, 556
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	332, 643, 646
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	250
BstZI	CGGCCG	1 cut(s)	88
BsuI	GTATCC	2 cut(s)	178, 394
BsuRI	GGCC	2 cut(s)	90, 561
BtsCI	GGATG	2 cut(s)	247, 322
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	4 cut(s)	99, 537, 541, 652
CfoI	GCGC	3 cut(s)	33, 302, 656
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	340, 583
CviAII	CATG	3 cut(s)	60, 452, 616
CviQI	GTAC	2 cut(s)	340, 583
DdeI	CTNAG	3 cut(s)	108, 176, 393
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	3 cut(s)	65, 437, 504
EarI	CTCTTC	3 cut(s)	65, 437, 504
Ecl136II	GAGCTC	2 cut(s)	85, 173
EclXI	CGGCCG	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	87, 175
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	2 cut(s)	85, 173
Eco72I	CACGTG	1 cut(s)	14
EcoICRI	GAGCTC	2 cut(s)	85, 173
EcoRII	CCWGG	3 cut(s)	237, 458, 556
EcoT38I	GRGCYC	2 cut(s)	87, 175
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	3 cut(s)	63, 455, 619
FaiI	YATR	9 cut(s)	61, 81, 250, 354, 453, 504, 545, 617, 664
FatI	CATG	3 cut(s)	59, 451, 615
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	321, 657, 660
FokI	GGATG	2 cut(s)	254, 329
FriOI	GRGCYC	2 cut(s)	87, 175
Fsp4HI	GCNGC	3 cut(s)	321, 657, 660
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	3 cut(s)	32, 301, 655
GluI	GCNGC	3 cut(s)	321, 657, 660
GsuI	CTGGAG	4 cut(s)	63, 100, 329, 611
HaeII	RGCGCY	3 cut(s)	34, 303, 657
HaeIII	GGCC	2 cut(s)	90, 561
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	3 cut(s)	33, 302, 656
Hin1II	CATG	3 cut(s)	63, 455, 619
Hin6I	GCGC	3 cut(s)	31, 300, 654
HinP1I	GCGC	3 cut(s)	31, 300, 654
HinfI	GANTC	2 cut(s)	17, 138
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	494, 628
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	5 cut(s)	49, 391, 407, 413, 631
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	13, 475
HpyCH4V	TGCA	6 cut(s)	25, 101, 310, 320, 543, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	567, 656
HpyF3I	CTNAG	3 cut(s)	108, 176, 393
HpySE526I	ACGT	2 cut(s)	13, 475
Hsp92II	CATG	3 cut(s)	63, 455, 619
HspAI	GCGC	3 cut(s)	31, 300, 654
KpnI	GGTACC	1 cut(s)	343
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	2 cut(s)	328, 630
Lsp1109I	GCAGC	3 cut(s)	332, 643, 646
LweI	GCATC	2 cut(s)	12, 307
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	2 cut(s)	13, 475
MaeIII	GTNAC	2 cut(s)	14, 217
MboII	GAAGA	9 cut(s)	64, 79, 82, 388, 454, 521, 540, 631, 646
MhlI	GDGCHC	2 cut(s)	87, 175
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	162
MseI	TTAA	1 cut(s)	330
MspR9I	CCNGG	3 cut(s)	239, 460, 558
MvaI	CCWGG	3 cut(s)	239, 460, 558
MwoI	GCNNNNNNNGC	2 cut(s)	567, 656
NlaIII	CATG	3 cut(s)	63, 455, 619
NlaIV	GGNNCC	1 cut(s)	341
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	14
PaqCI	CACCTGC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	322, 658, 661
PleI	GAGTC	1 cut(s)	11
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	14
Psp124BI	GAGCTC	2 cut(s)	87, 175
Psp6I	CCWGG	3 cut(s)	237, 458, 556
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	3 cut(s)	237, 458, 556
PspN4I	GGNNCC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	341, 584
RsaNI	GTAC	2 cut(s)	340, 583
SacI	GAGCTC	2 cut(s)	87, 175
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	321, 657, 660
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	3 cut(s)	239, 460, 558
SduI	GDGCHC	2 cut(s)	87, 175
SfaNI	GCATC	2 cut(s)	12, 307
SfcI	CTRYAG	1 cut(s)	426
SmlI	CTYRAG	2 cut(s)	467, 605
SmoI	CTYRAG	2 cut(s)	467, 605
Sse9I	AATT	1 cut(s)	363
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	2 cut(s)	87, 175
StyD4I	CCNGG	3 cut(s)	237, 458, 556
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	16, 478
TaqI	TCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	320, 656, 659
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	632
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	214
XbaI	TCTAGA	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 333
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.