Rmu_sc0039609.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039609.1
OG0001913
Physical Location & Seq
Forward (+)
1 .. 2516
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039609.1_g000001.1.cds

Sequence Viewer

Length: 749 bp
ttgcctcaaaccctagccgcgttgccgcagctcccgcaacagagaaaccttggaactctccttctgccaaaatgggtatctctcgagattccatgcacaagagacgtgccactggaggcaagaagaaggcgtggaggaagaagcgaaagtatgagctcggaagggtgcctgccaacactaaactgtccagcaacaagacagtgaggaggatcagggttcgaggtggaaatgtgaagtggcgtgctttgaggctcgacacaggaaatttctcttggggtagtgagactgtgaccaggaagacccgtcttcttgatgttgtctacaatgcatctaacaatgagctggtgcgtactcaaaccttggtgaagggtgccattgttcaggttgatgcagcacctttcaagcagtggtattctacccactatggtgttgaaattgggcgcaggaagaaaactgcagctgttatcaagaaagaagcagaggacggtgaggccgctactgccgctgccgctgccgctgaggaggtgaagaagagcaagcatgtagcaaggaagctagagaagcgtcagcagactcgtgtgcttgaccagcatattgaggaacaatttggtggtggtcgtctattggcttgcatctcttcacgacctggtcaatgtggccgtgcagatggatacatcttggagggcaaagagctggagttttacatgaagaagctccagaagaagaagggaaagggagcagctgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000313 GO:0000462 GO:0000956 GO:0002164 GO:0002181 GO:0002182 GO:0002376 GO:0002520 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006414 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009790 GO:0009791 GO:0009792 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030097 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035166 GO:0035167 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043009 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043253 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048534 GO:0048542 GO:0048569 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Ribosomal_S8e

Protein Analysis

248

Amino Acids

27.53

Weight (kDa)

10.51

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 165, 370
AccI GTMKAC 1 cut(s) 320
AccII CGCG 1 cut(s) 20
AciI CCGC 7 cut(s) 18, 26, 35, 494, 503, 509, 515
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 351
AgsI TTSAA 2 cut(s) 402, 433
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 2 cut(s) 292, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 8 cut(s) 31, 156, 342, 460, 555, 693, 714, 742
AluI AGCT 8 cut(s) 31, 156, 342, 460, 555, 693, 714, 742
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 96, 277
AlwI GGATC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 2 cut(s) 491, 657
ApeKI GCWGC 7 cut(s) 28, 391, 457, 505, 511, 739, 742
ApoI RAATTY 1 cut(s) 264
AspLEI GCGC 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 375, 499, 537
AvaI CYCGRG 1 cut(s) 83
BanI GGYRCC 2 cut(s) 165, 370
BanII GRGCYC 1 cut(s) 158
BauI CACGAG 1 cut(s) 575
BbsI GAAGAC 2 cut(s) 298, 304
Bbv12I GWGCWC 1 cut(s) 158
BbvCI CCTCAGC 1 cut(s) 518
BbvI GCAGC 6 cut(s) 40, 403, 469, 492, 498, 729
BccI CCATC 1 cut(s) 661
BceAI ACGGC 1 cut(s) 644
BciT130I CCWGG 2 cut(s) 294, 647
BciVI GTATCC 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 96, 277
BfaI CTAG 2 cut(s) 14, 556
BfmI CTRYAG 1 cut(s) 455
BfuI GTATCC 1 cut(s) 664
Bme1390I CCNGG 2 cut(s) 294, 647
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 167, 372
BmrFI CCNGG 2 cut(s) 294, 647
BmsI GCATC 3 cut(s) 337, 378, 641
BpiI GAAGAC 2 cut(s) 298, 304
BpmI CTGGAG 3 cut(s) 134, 700, 715
Bpu10I CCTNAGC 1 cut(s) 518
BsaJI CCNNGG 2 cut(s) 49, 359
Bse1I ACTGG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 294, 647
BseDI CCNNGG 2 cut(s) 49, 359
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 2 cut(s) 219, 535
BseXI GCAGC 6 cut(s) 40, 403, 469, 492, 498, 729
BsgI GTGCAG 1 cut(s) 683
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 2 cut(s) 493, 659
BshNI GGYRCC 2 cut(s) 165, 370
BsiHKAI GWGCWC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 96, 277
BsmBI CGTCTC 1 cut(s) 96
BsnI GGCC 2 cut(s) 493, 659
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 7 cut(s) 18, 26, 35, 494, 503, 509, 515
BspANI GGCC 2 cut(s) 493, 659
BspCNI CTCAG 1 cut(s) 510
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 2 cut(s) 167, 372
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 526
BspT107I GGYRCC 2 cut(s) 165, 370
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 49, 359
BssMI GATC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 575
BssT1I CCWWGG 2 cut(s) 49, 359
Bst2BI CACGAG 1 cut(s) 575
Bst2UI CCWGG 2 cut(s) 294, 647
Bst4CI ACNGT 4 cut(s) 185, 201, 288, 487
Bst6I CTCTTC 2 cut(s) 526, 642
BstC8I GCNNGC 4 cut(s) 170, 242, 538, 630
BstDEI CTNAG 1 cut(s) 518
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 2 cut(s) 96, 277
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 8 cut(s) 34, 499, 502, 508, 511, 514, 561, 588
BstNI CCWGG 2 cut(s) 294, 647
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 2 cut(s) 292, 645
BstSFI CTRYAG 1 cut(s) 455
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 6 cut(s) 40, 403, 469, 492, 498, 729
BstV2I GAAGAC 2 cut(s) 298, 304
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 2 cut(s) 493, 659
BtrI CACGTC 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 3 cut(s) 110, 206, 412
Cac8I GCNNGC 4 cut(s) 170, 242, 538, 630
CfoI GCGC 1 cut(s) 443
CseI GACGC 1 cut(s) 553
CsiI ACCWGGT 1 cut(s) 645
Csp6I GTAC 1 cut(s) 350
CviAII CATG 3 cut(s) 93, 541, 705
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 1 cut(s) 518
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 2 cut(s) 526, 642
EarI CTCTTC 2 cut(s) 526, 642
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 49, 359
Eco24I GRGCYC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 292, 645
EcoT14I CCWWGG 2 cut(s) 49, 359
EcoT22I ATGCAT 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 2 cut(s) 49, 359
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 3 cut(s) 96, 544, 708
FaiI YATR 6 cut(s) 94, 152, 425, 542, 593, 706
FatI CATG 3 cut(s) 92, 540, 704
FauI CCCGC 1 cut(s) 42
FblI GTMKAC 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 158
FspBI CTAG 2 cut(s) 14, 556
GlaI GCGC 1 cut(s) 442
GsuI CTGGAG 3 cut(s) 134, 700, 715
HaeIII GGCC 2 cut(s) 493, 659
HgaI GACGC 1 cut(s) 553
HhaI GCGC 1 cut(s) 443
Hin1II CATG 3 cut(s) 96, 544, 708
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 2 cut(s) 88, 573
HphI GGTGA 3 cut(s) 375, 499, 537
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 6 cut(s) 83, 85, 310, 468, 641, 717
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 5 cut(s) 71, 120, 155, 360, 720
HpyCH4III ACNGT 4 cut(s) 185, 201, 288, 487
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 6 cut(s) 96, 328, 391, 457, 632, 664
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 499, 502, 508, 511, 514, 561, 588
HpyF3I CTNAG 1 cut(s) 518
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 96, 544, 708
HspAI GCGC 1 cut(s) 441
Kzo9I GATC 1 cut(s) 209
LguI GCTCTTC 1 cut(s) 526
LmnI GCTCC 3 cut(s) 36, 719, 736
Lsp1109I GCAGC 6 cut(s) 40, 403, 469, 492, 498, 729
LweI GCATC 3 cut(s) 337, 378, 641
MabI ACCWGGT 1 cut(s) 645
MaeI CTAG 2 cut(s) 14, 556
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 288
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 3 cut(s) 264, 434, 604
MlyI GAGTC 1 cut(s) 567
Mph1103I ATGCAT 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 5 cut(s) 460, 505, 511, 517, 742
MspR9I CCNGG 2 cut(s) 294, 647
MvaI CCWGG 2 cut(s) 294, 647
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 8 cut(s) 34, 499, 502, 508, 511, 514, 561, 588
NdeII GATC 1 cut(s) 209
NlaIII CATG 3 cut(s) 96, 544, 708
NlaIV GGNNCC 2 cut(s) 167, 372
NmuCI GTSAC 1 cut(s) 288
NsiI ATGCAT 1 cut(s) 330
NspI RCATGY 1 cut(s) 544
OliI CACNNNNGTG 1 cut(s) 425
PaeR7I CTCGAG 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 88
PflFI GACNNNGTC 1 cut(s) 647
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
Psp124BI GAGCTC 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 292, 645
PspGI CCWGG 2 cut(s) 292, 645
PspN4I GGNNCC 2 cut(s) 167, 372
PstI CTGCAG 1 cut(s) 459
PsyI GACNNNGTC 1 cut(s) 647
PvuII CAGCTG 2 cut(s) 460, 742
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 425
SacI GAGCTC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 526
Sau3AI GATC 1 cut(s) 209
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 2 cut(s) 294, 647
SduI GDGCHC 1 cut(s) 158
SexAI ACCWGGT 1 cut(s) 645
SfaNI GCATC 3 cut(s) 337, 378, 641
SfcI CTRYAG 1 cut(s) 455
Sfr274I CTCGAG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 264, 434, 604
SsiI CCGC 7 cut(s) 18, 26, 35, 494, 503, 509, 515
SspMI CTAG 2 cut(s) 14, 556
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 292, 645
StyI CCWWGG 2 cut(s) 49, 359
TaaI ACNGT 4 cut(s) 185, 201, 288, 487
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 84, 219, 254
TasI AATT 3 cut(s) 264, 434, 604
TauI GCSGC 6 cut(s) 20, 28, 496, 505, 511, 517
TfiI GAWTC 1 cut(s) 88
TscAI CASTG 3 cut(s) 117, 206, 412
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 7 cut(s) 28, 391, 457, 505, 511, 739, 742
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 721
TspRI CASTG 3 cut(s) 117, 206, 412
Tth111I GACNNNGTC 1 cut(s) 647
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 2 cut(s) 14, 556
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.