Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Forward (+)

36381462 .. 36387316

Gene Structure 5855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAGTTCCTGTAAATCTGTAATCAACTTAAGATTTCATAGTTTTGGAAAGACAGTTAGGCAAAATGTTAAATATGGTGTTGATAAAGAGGTGTTTAGAAGGGGTGGAGAGGAGACGGATTTTTTGCAACAGCAAGGAATTCAAGTGCAAGTTATTCCAGAACAAGAAAGAAAGAAAGAAGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGCTTATTTTGCCCTTTACGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCGGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAACAGTGACTCTATGCACAAGAGGCGCGCCACCGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGTCGGCCGGCAAATACCAAGATCTCAAGCAACAAAACTGTAAGAAGAATTCGTGTTAGAGGTGGCAATGTGAAGTGGAAGGCCCCGAGATTGAATACGGGAACTTTTCTTGGGGTAGTGAGGCTGTTACTCGCAAGACTCGTATTCTTGATGTCGTTTACAATGCCTCAAACAACGAACTTGTTAGGACACGAGACTCTTGTGAAGAGTGCAATTGTTCGGTGGATGCTGCTCCTTTTAGGCAATGGTATCTACAGCACTACAATGTTGACATCGGGAGGAAGAAAAGACAGCTGCAAAAAGGATGCCAAGGATGCTGCTACGGAGGAGGCGAGATGGCACCACAGAAGAAACCAAAAAGAGCAGCAATCTCCGAGGAAGCTTGAGAAGCGCCGGAAAGATCGTACTCTTGATTCCCACATCGAAGAGCAGTTTAGTGGTGGTAGGTTGTTGGCTTGCATTTCTTCCCGCCCGGGCCAATGTGGAAGATCCGATGGGCATCGAGCATTGAAGGCCGGCACACTCGGTCTTCCCTCCGACTTTTATTCTCGTCAAATAAGTGAGACCGATAGCGATAGTGACATGACATCCCATGATTCTGCTGGATTAGACTTTACTTATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

346

Amino Acids

39.38

Weight (kDa)

10.11

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	114 - 304	3.8e-29	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	753
AccII	CGCG	1 cut(s)	360
AciI	CCGC	1 cut(s)	883
AclWI	GGATC	1 cut(s)	897
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	3 cut(s)	138, 198, 462
AfaI	GTAC	2 cut(s)	260, 820
AflII	CTTAAG	1 cut(s)	28
AgeI	ACCGGT	2 cut(s)	293, 365
AgsI	TTSAA	4 cut(s)	143, 314, 508, 925
AluBI	AGCT	6 cut(s)	226, 326, 383, 409, 708, 796
AluI	AGCT	6 cut(s)	226, 326, 383, 409, 708, 796
Alw26I	GTCTC	3 cut(s)	107, 602, 971
AlwI	GGATC	1 cut(s)	897
Ama87I	CYCGRG	2 cut(s)	499, 886
AoxI	GGCC	5 cut(s)	271, 419, 495, 889, 927
ApeKI	GCWGC	4 cut(s)	643, 708, 731, 778
ApoI	RAATTY	3 cut(s)	138, 198, 462
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AscI	GGCGCGCC	1 cut(s)	358
AsiGI	ACCGGT	2 cut(s)	293, 365
AspLEI	GCGC	3 cut(s)	360, 362, 807
AspS9I	GGNCC	2 cut(s)	496, 889
AsuC2I	CCSGG	2 cut(s)	887, 888
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	2 cut(s)	499, 886
BanI	GGYRCC	1 cut(s)	753
BauI	CACGAG	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	935
BbvI	GCAGC	4 cut(s)	630, 695, 718, 790
BccI	CCATC	2 cut(s)	744, 902
BcnI	CCSGG	2 cut(s)	887, 888
BcoDI	GTCTC	3 cut(s)	107, 602, 971
BfmI	CTRYAG	1 cut(s)	667
BfoI	RGCGCY	1 cut(s)	808
BfrI	CTTAAG	1 cut(s)	28
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	4 cut(s)	644, 709, 732, 779
BlsI	GCNGC	4 cut(s)	645, 710, 733, 780
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	887, 888
BmeT110I	CYCGRG	2 cut(s)	499, 886
BmgT120I	GGNCC	2 cut(s)	496, 889
BmiI	GGNNCC	2 cut(s)	498, 755
BmrFI	CCNGG	2 cut(s)	887, 888
BmsI	GCATC	5 cut(s)	277, 630, 709, 718, 922
BpiI	GAAGAC	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	424, 818
BpuMI	CCSGG	2 cut(s)	887, 888
BsaBI	GATNNNNATC	1 cut(s)	912
BsaI	GGTCTC	1 cut(s)	971
BsaJI	CCNNGG	3 cut(s)	723, 788, 886
BsaWI	WCCGGW	2 cut(s)	293, 365
Bse118I	RCCGGY	4 cut(s)	293, 365, 421, 929
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	2 cut(s)	487, 664
Bse8I	GATNNNNATC	1 cut(s)	912
BseDI	CCNNGG	3 cut(s)	723, 788, 886
BseGI	GGATG	4 cut(s)	645, 724, 733, 1001
BseJI	GATNNNNATC	1 cut(s)	912
BseMI	GCAATG	2 cut(s)	487, 664
BseNI	ACTGG	1 cut(s)	252
BsePI	GCGCGC	1 cut(s)	358
BseRI	GAGGAG	2 cut(s)	125, 755
BseX3I	CGGCCG	1 cut(s)	419
BseXI	GCAGC	4 cut(s)	630, 695, 718, 790
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	422
BshFI	GGCC	5 cut(s)	273, 421, 497, 891, 929
BshNI	GGYRCC	1 cut(s)	753
BshTI	ACCGGT	2 cut(s)	293, 365
BsiEI	CGRYCG	1 cut(s)	422
BsiHKCI	CYCGRG	2 cut(s)	499, 886
BsiSI	CCGG	6 cut(s)	294, 366, 422, 808, 887, 930
BsmAI	GTCTC	3 cut(s)	107, 602, 971
BsmBI	CGTCTC	1 cut(s)	107
BsnI	GGCC	5 cut(s)	273, 421, 497, 891, 929
Bso31I	GGTCTC	1 cut(s)	971
BsoBI	CYCGRG	2 cut(s)	499, 886
Bsp143I	GATC	4 cut(s)	265, 435, 814, 902
BspACI	CCGC	1 cut(s)	883
BspANI	GGCC	5 cut(s)	273, 421, 497, 891, 929
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	498, 755
BspPI	GGATC	1 cut(s)	897
BspQI	GCTCTTC	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	753
BspTI	CTTAAG	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	971
BsrDI	GCAATG	2 cut(s)	487, 664
BsrFI	RCCGGY	4 cut(s)	293, 365, 421, 929
BsrI	ACTGG	1 cut(s)	252
BssAI	RCCGGY	4 cut(s)	293, 365, 421, 929
BssECI	CCNNGG	3 cut(s)	723, 788, 886
BssHII	GCGCGC	1 cut(s)	358
BssMI	GATC	4 cut(s)	265, 435, 814, 902
BssSI	CACGAG	1 cut(s)	605
BssT1I	CCWWGG	1 cut(s)	723
Bst2BI	CACGAG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	55, 338, 454
Bst6I	CTCTTC	2 cut(s)	614, 834
BstAFI	CTTAAG	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	360, 423, 871, 931
BstF5I	GGATG	4 cut(s)	645, 724, 733, 1001
BstFNI	CGCG	1 cut(s)	360
BstH2I	RGCGCY	1 cut(s)	808
BstHHI	GCGC	3 cut(s)	360, 362, 807
BstKTI	GATC	4 cut(s)	268, 438, 817, 905
BstMAI	GTCTC	3 cut(s)	107, 602, 971
BstMBI	GATC	4 cut(s)	265, 435, 814, 902
BstMCI	CGRYCG	1 cut(s)	422
BstMWI	GCNNNNNNNGC	5 cut(s)	232, 355, 728, 802, 926
BstSCI	CCNGG	2 cut(s)	885, 886
BstSFI	CTRYAG	1 cut(s)	667
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	4 cut(s)	630, 695, 718, 790
BstV2I	GAAGAC	1 cut(s)	935
BstX2I	RGATCY	2 cut(s)	435, 902
BstYI	RGATCY	2 cut(s)	435, 902
BstZI	CGGCCG	1 cut(s)	419
BsuRI	GGCC	5 cut(s)	273, 421, 497, 891, 929
BtsCI	GGATG	4 cut(s)	645, 724, 733, 1001
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	4 cut(s)	360, 423, 871, 931
CfoI	GCGC	3 cut(s)	360, 362, 807
Cfr10I	RCCGGY	4 cut(s)	293, 365, 421, 929
Cfr13I	GGNCC	2 cut(s)	496, 889
Cfr9I	CCCGGG	1 cut(s)	886
Csp6I	GTAC	2 cut(s)	259, 819
CspAI	ACCGGT	2 cut(s)	293, 365
CviAII	CATG	2 cut(s)	997, 1007
CviQI	GTAC	2 cut(s)	259, 819
DpnI	GATC	4 cut(s)	267, 437, 816, 904
DpnII	GATC	4 cut(s)	265, 435, 814, 902
EaeI	YGGCCR	1 cut(s)	419
EagI	CGGCCG	1 cut(s)	419
Eam1104I	CTCTTC	2 cut(s)	614, 834
EarI	CTCTTC	2 cut(s)	614, 834
EclXI	CGGCCG	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	723
Eco31I	GGTCTC	1 cut(s)	971
Eco32I	GATATC	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	419
Eco88I	CYCGRG	2 cut(s)	499, 886
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRI	GAATTC	2 cut(s)	138, 462
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	723
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	1000, 1010
FaiI	YATR	8 cut(s)	39, 75, 215, 347, 405, 998, 1008, 1035
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 315, 347
FatI	CATG	2 cut(s)	996, 1006
FauI	CCCGC	1 cut(s)	890
Fnu4HI	GCNGC	4 cut(s)	644, 709, 732, 779
FokI	GGATG	4 cut(s)	652, 731, 740, 988
Fsp4HI	GCNGC	4 cut(s)	644, 709, 732, 779
GlaI	GCGC	3 cut(s)	359, 361, 806
GluI	GCNGC	4 cut(s)	644, 709, 732, 779
HaeII	RGCGCY	1 cut(s)	808
HaeIII	GGCC	5 cut(s)	273, 421, 497, 891, 929
HapII	CCGG	6 cut(s)	294, 366, 422, 808, 887, 930
HhaI	GCGC	3 cut(s)	360, 362, 807
Hin1II	CATG	2 cut(s)	1000, 1010
Hin6I	GCGC	3 cut(s)	358, 360, 805
HinP1I	GCGC	3 cut(s)	358, 360, 805
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HindIII	AAGCTT	3 cut(s)	224, 381, 794
HinfI	GANTC	7 cut(s)	193, 303, 341, 552, 610, 827, 1010
HpaII	CCGG	6 cut(s)	294, 366, 422, 808, 887, 930
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	573, 684
Hpy188I	TCNGA	3 cut(s)	789, 907, 952
Hpy188III	TCNNGA	6 cut(s)	158, 205, 284, 562, 690, 824
Hpy8I	GTNNAC	2 cut(s)	573, 684
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	4 cut(s)	93, 173, 487, 919
HpyCH4III	ACNGT	3 cut(s)	55, 338, 454
HpyCH4V	TGCA	7 cut(s)	127, 148, 320, 349, 626, 711, 873
HpyF10VI	GCNNNNNNNGC	5 cut(s)	232, 355, 728, 802, 926
Hsp92II	CATG	2 cut(s)	1000, 1010
HspAI	GCGC	3 cut(s)	358, 360, 805
KroI	GCCGGC	2 cut(s)	421, 929
KroNI	GCCGGC	2 cut(s)	423, 931
Kzo9I	GATC	4 cut(s)	265, 435, 814, 902
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	1 cut(s)	651
Lsp1109I	GCAGC	4 cut(s)	630, 695, 718, 790
LweI	GCATC	5 cut(s)	277, 630, 709, 718, 922
MaeIII	GTNAC	4 cut(s)	304, 338, 540, 992
MalI	GATC	4 cut(s)	267, 437, 816, 904
MboI	GATC	4 cut(s)	265, 435, 814, 902
MfeI	CAATTG	2 cut(s)	309, 627
MflI	RGATCY	2 cut(s)	435, 902
MluCI	AATT	5 cut(s)	138, 198, 309, 462, 627
MlyI	GAGTC	5 cut(s)	187, 312, 335, 546, 604
MmeI	TCCRAC	1 cut(s)	975
MroNI	GCCGGC	2 cut(s)	421, 929
MseI	TTAA	3 cut(s)	29, 69, 333
MslI	CAYNNNNRTG	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	708
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	6 cut(s)	294, 366, 422, 808, 887, 930
MspR9I	CCNGG	2 cut(s)	887, 888
MunI	CAATTG	2 cut(s)	309, 627
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	5 cut(s)	232, 355, 728, 802, 926
NaeI	GCCGGC	2 cut(s)	423, 931
NciI	CCSGG	2 cut(s)	887, 888
NdeII	GATC	4 cut(s)	265, 435, 814, 902
NgoMIV	GCCGGC	2 cut(s)	421, 929
NlaIII	CATG	2 cut(s)	1000, 1010
NlaIV	GGNNCC	2 cut(s)	498, 755
NmuCI	GTSAC	3 cut(s)	304, 338, 992
PalAI	GGCGCGCC	1 cut(s)	358
PauI	GCGCGC	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	2 cut(s)	552, 743
PdiI	GCCGGC	2 cut(s)	423, 931
PfeI	GAWTC	2 cut(s)	827, 1010
PinAI	ACCGGT	2 cut(s)	293, 365
PkrI	GCNGC	4 cut(s)	645, 710, 733, 780
PleI	GAGTC	5 cut(s)	187, 311, 335, 546, 604
PpsI	GAGTC	5 cut(s)	187, 311, 335, 546, 604
PspN4I	GGNNCC	2 cut(s)	498, 755
PspPI	GGNCC	2 cut(s)	496, 889
PsuI	RGATCY	2 cut(s)	435, 902
PteI	GCGCGC	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	708
RsaI	GTAC	2 cut(s)	260, 820
RsaNI	GTAC	2 cut(s)	259, 819
RseI	CAYNNNNRTG	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	3 cut(s)	29, 69, 333
SatI	GCNGC	4 cut(s)	644, 709, 732, 779
Sau3AI	GATC	4 cut(s)	265, 435, 814, 902
Sau96I	GGNCC	2 cut(s)	496, 889
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	5 cut(s)	187, 312, 335, 546, 604
ScrFI	CCNGG	2 cut(s)	887, 888
SetI	ASST	9 cut(s)	93, 228, 328, 385, 411, 478, 710, 798, 863
SfaNI	GCATC	5 cut(s)	277, 630, 709, 718, 922
SfcI	CTRYAG	1 cut(s)	667
SgrAI	CRCCGGYG	2 cut(s)	293, 365
SgsI	GGCGCGCC	1 cut(s)	358
SmaI	CCCGGG	1 cut(s)	888
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	3 cut(s)	28, 439, 797
SmoI	CTYRAG	3 cut(s)	28, 439, 797
SrfI	GCCCGGGC	1 cut(s)	888
Sse9I	AATT	5 cut(s)	138, 198, 309, 462, 627
SsiI	CCGC	1 cut(s)	883
StyD4I	CCNGG	2 cut(s)	885, 886
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	3 cut(s)	55, 338, 454
TaqI	TCGA	3 cut(s)	196, 837, 916
TaqII	GACCGA	2 cut(s)	929, 995
TasI	AATT	5 cut(s)	138, 198, 309, 462, 627
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	827, 1010
Tru1I	TTAA	3 cut(s)	29, 69, 333
Tru9I	TTAA	3 cut(s)	29, 69, 333
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	3 cut(s)	304, 338, 992
TseI	GCWGC	4 cut(s)	643, 708, 731, 778
Tsp45I	GTSAC	3 cut(s)	304, 338, 992
TspDTI	ATGAA	2 cut(s)	26, 201
TspGWI	ACGGA	3 cut(s)	131, 257, 752
TspMI	CCCGGG	1 cut(s)	886
TspRI	CASTG	1 cut(s)	343
Vha464I	CTTAAG	1 cut(s)	28
XapI	RAATTY	3 cut(s)	138, 198, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XmaI	CCCGGG	1 cut(s)	886
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.