Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Reverse (-)

7387985 .. 7390613

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGAATTCGTTAACCGTTGAACAAGTATTGAAAGAGAAGAAGACCAATGACCCAGATTCCGTCAAGGAACTTAATCTCGGCCATAAAGCTCTCACCGACGTGTCTTGTTTGAGCAAGTTCAAAAACTTGGAAAAGCTTGATCTTCGTTTCAACAATCTAACAGATCTTCAGGGACTCAAGTCTTGTGTGAACTTGAAATGGCTTTCAGTTGTGGAAAACAAATTGCAAAGCTTAAATGGAATTGAAGCACTCACTAAGCTTACGGTGCTTAATGCTGGAAAGAATAAGCTCAAATCCATGAATGAGATCTCTTCTCTTGTCAATTTACGGGCCTTGATCTTGAATGACAATGAAATCTCCTCCATTTGCAAGCTTGATTTACTCAAAGACTTGAACAGTCTCGTTCTTTCTAGGAACCCAATCAGTGAAATAGGTGACTCACTTTCAAAGTTGAAAAACCTCTCCAAAATTTCTTTGTCTGACTGCAGAATAAAAGCTATTGGCTCTTCTCTCAAGTCATGCTCTGATTTGAAAGAGCTGCGGCTCGCGAACAATGAAATCAAGGCTCTCCCAGCAGAACTAGCAGTCAACAAAAGACTACTCAATTTGGATGTGGGAAACAATGTGATTACGCAACTCTCTGGTTTAGAGGTTTTGGGTACACTATCTTGCTTGCGAAATCTGAATATTCGAGGAAACCCGATTTCTGATAACGATAAGTCAGCTAAGAAGGTGAGAACGTTGCTTCTCCCTTCAGTGAATGTATTCAACGCTCAACCCTTAGAAAAAAGCTCAAGGAATGCAAAGCATATTCGGCTTGATACCGATGATGAAACCTTTGATGCCTATCACAATAAATCAGCAGAAGAGGAACAATCTAAAGAAGATCGAAAACGCAAGAAGAGCTCTAAGAGAAATAAGTCAGAAGAAGAAGAAGTCAACAATGAGGATCACAAAAGCAAGAAGAAGAAGTCTAAGAGCAACACAAATGTAGATCAAGTTGAAACAAAAAAGAAAGAAGAACATAAAGAGAAGACAATCCCAAGTAACAATGATGATGATGATGATGCTGAGAAGAAACAGAAAAGGGCTACTCCAAAGGAGGAACTCGATGCTATAGATGATGCTGAAACCTCTTTCGCAGAAATCTTTTCCCGGGAAAATGTGCCAAAGGGTTCTGAAGACGGTATTGAGAAGAAGAAGAAAAGCAGCGTCCAAGAGACAGGTTTAGTAAAAGTGATAGATACTAAAGCTAACAAGAAGAAGAAGAAGAGTGAAAAGAAGCAAAGCAAGAGTGTAGTGATTGATCTTCCCATGGAGGTTGAGATCGGGTTAGGAGGAGAGTCTAAGTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

452

Amino Acids

50.54

Weight (kDa)

8.98

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	20 - 60	5.1e-07	Leucine Rich repeats (2 copies)
LRR_14	PF23598	65 - 236	5.9e-07	Leucine-rich repeat region
LRR_4	PF12799	152 - 190	6.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	548
AciI	CCGC	1 cut(s)	541
AclI	AACGTT	1 cut(s)	740
AclWI	GGATC	1 cut(s)	957
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	4, 468
AcuI	CTGAAG	3 cut(s)	152, 738, 1200
AfaI	GTAC	1 cut(s)	661
AflIII	ACRYGT	1 cut(s)	99
AjiI	CACGTC	1 cut(s)	100
AleI	CACNNNNGTG	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	908
Alw26I	GTCTC	2 cut(s)	404, 1214
AlwI	GGATC	1 cut(s)	957
Ama87I	CYCGRG	1 cut(s)	1155
AoxI	GGCC	2 cut(s)	79, 330
ApeKI	GCWGC	2 cut(s)	538, 1209
ApoI	RAATTY	2 cut(s)	4, 468
Asp700I	GAANNNNTTC	1 cut(s)	764
AspS9I	GGNCC	1 cut(s)	330
AsuC2I	CCSGG	2 cut(s)	1156, 1157
AsuHPI	GGTGA	3 cut(s)	85, 446, 745
AvaI	CYCGRG	1 cut(s)	1155
BanII	GRGCYC	1 cut(s)	908
BbsI	GAAGAC	3 cut(s)	47, 1040, 1188
Bbv12I	GWGCWC	1 cut(s)	908
BbvI	GCAGC	2 cut(s)	525, 1221
BcnI	CCSGG	2 cut(s)	1156, 1157
BcoDI	GTCTC	2 cut(s)	404, 1214
BfaI	CTAG	2 cut(s)	411, 581
BfmI	CTRYAG	2 cut(s)	484, 1116
BglII	AGATCT	2 cut(s)	163, 306
BisI	GCNGC	3 cut(s)	539, 542, 1210
BlsI	GCNGC	3 cut(s)	540, 543, 1211
Bme1390I	CCNGG	2 cut(s)	1156, 1157
BmeT110I	CYCGRG	1 cut(s)	1155
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	416
BmrFI	CCNGG	2 cut(s)	1156, 1157
BmsI	GCATC	4 cut(s)	832, 1057, 1102, 1114
BoxI	GACNNNNGTC	1 cut(s)	178
BpiI	GAAGAC	3 cut(s)	47, 1040, 1188
BpuEI	CTTGAG	3 cut(s)	161, 497, 778
BpuMI	CCSGG	2 cut(s)	1156, 1157
BsaBI	GATNNNNATC	1 cut(s)	846
BsaJI	CCNNGG	2 cut(s)	1155, 1314
Bse8I	GATNNNNATC	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	1155, 1314
BseGI	GGATG	1 cut(s)	616
BseJI	GATNNNNATC	1 cut(s)	846
BseMII	CTCAG	1 cut(s)	1062
BseRI	GAGGAG	2 cut(s)	349, 1353
BseXI	GCAGC	2 cut(s)	525, 1221
BseYI	CCCAGC	1 cut(s)	571
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	2 cut(s)	81, 332
BsiHKAI	GWGCWC	1 cut(s)	908
BsiHKCI	CYCGRG	1 cut(s)	1155
BsiSI	CCGG	1 cut(s)	1156
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	404, 1214
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	2 cut(s)	81, 332
BsoBI	CYCGRG	1 cut(s)	1155
Bsp1286I	GDGCHC	1 cut(s)	908
Bsp143I	GATC	9 cut(s)	139, 163, 306, 336, 886, 949, 994, 1306, 1326
Bsp19I	CCATGG	1 cut(s)	1314
Bsp68I	TCGCGA	1 cut(s)	548
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	2 cut(s)	81, 332
BspCNI	CTCAG	1 cut(s)	1063
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	1 cut(s)	416
BspMAI	CTGCAG	1 cut(s)	488
BspPI	GGATC	1 cut(s)	957
BspQI	GCTCTTC	2 cut(s)	511, 896
BssECI	CCNNGG	2 cut(s)	1155, 1314
BssMI	GATC	9 cut(s)	139, 163, 306, 336, 886, 949, 994, 1306, 1326
BssT1I	CCWWGG	1 cut(s)	1314
Bst4CI	ACNGT	4 cut(s)	16, 265, 398, 1187
Bst6I	CTCTTC	5 cut(s)	316, 511, 861, 896, 1265
BstC8I	GCNNGC	3 cut(s)	371, 546, 674
BstDEI	CTNAG	7 cut(s)	255, 726, 781, 909, 975, 1071, 1347
BstDSI	CCRYGG	1 cut(s)	1314
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	9 cut(s)	142, 166, 309, 339, 889, 952, 997, 1309, 1329
BstMAI	GTCTC	2 cut(s)	404, 1214
BstMBI	GATC	9 cut(s)	139, 163, 306, 336, 886, 949, 994, 1306, 1326
BstMWI	GCNNNNNNNGC	5 cut(s)	265, 572, 581, 814, 903
BstPAI	GACNNNNGTC	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	1154, 1155
BstSFI	CTRYAG	2 cut(s)	484, 1116
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	525, 1221
BstV2I	GAAGAC	3 cut(s)	47, 1040, 1188
BstX2I	RGATCY	2 cut(s)	163, 306
BstYI	RGATCY	2 cut(s)	163, 306
BsuRI	GGCC	2 cut(s)	81, 332
BtgI	CCRYGG	1 cut(s)	1314
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	2 cut(s)	430, 762
BtuMI	TCGCGA	1 cut(s)	548
Cac8I	GCNNGC	3 cut(s)	371, 546, 674
Cfr13I	GGNCC	1 cut(s)	330
Cfr9I	CCCGGG	1 cut(s)	1155
CseI	GACGC	1 cut(s)	1201
Csp6I	GTAC	1 cut(s)	660
CviAII	CATG	3 cut(s)	298, 519, 1315
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	7 cut(s)	255, 726, 781, 909, 975, 1071, 1347
DpnI	GATC	9 cut(s)	141, 165, 308, 338, 888, 951, 996, 1308, 1328
DpnII	GATC	9 cut(s)	139, 163, 306, 336, 886, 949, 994, 1306, 1326
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	5 cut(s)	316, 511, 861, 896, 1265
EarI	CTCTTC	5 cut(s)	316, 511, 861, 896, 1265
Ecl136II	GAGCTC	1 cut(s)	906
Eco130I	CCWWGG	1 cut(s)	1314
Eco24I	GRGCYC	1 cut(s)	908
Eco53kI	GAGCTC	1 cut(s)	906
Eco57I	CTGAAG	3 cut(s)	152, 738, 1200
Eco88I	CYCGRG	1 cut(s)	1155
EcoICRI	GAGCTC	1 cut(s)	906
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	1314
EcoT38I	GRGCYC	1 cut(s)	908
ErhI	CCWWGG	1 cut(s)	1314
FaeI	CATG	3 cut(s)	301, 522, 1318
FaiI	YATR	7 cut(s)	84, 299, 520, 810, 1026, 1118, 1316
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	3 cut(s)	297, 518, 1314
Fnu4HI	GCNGC	3 cut(s)	539, 542, 1210
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	908
Fsp4HI	GCNGC	3 cut(s)	539, 542, 1210
FspBI	CTAG	2 cut(s)	411, 581
GluI	GCNGC	3 cut(s)	539, 542, 1210
GsaI	CCCAGC	1 cut(s)	575
HaeIII	GGCC	2 cut(s)	81, 332
HapII	CCGG	1 cut(s)	1156
HgaI	GACGC	1 cut(s)	1201
Hin1II	CATG	3 cut(s)	301, 522, 1318
HincII	GTYRAC	3 cut(s)	12, 589, 940
HindII	GTYRAC	3 cut(s)	12, 589, 940
HindIII	AAGCTT	4 cut(s)	134, 229, 257, 371
HinfI	GANTC	4 cut(s)	56, 174, 437, 1343
HpaI	GTTAAC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	1156
HphI	GGTGA	3 cut(s)	85, 446, 745
Hpy166II	GTNNAC	5 cut(s)	12, 190, 589, 662, 940
Hpy188I	TCNGA	6 cut(s)	481, 526, 684, 709, 925, 1180
Hpy188III	TCNNGA	2 cut(s)	340, 547
Hpy8I	GTNNAC	5 cut(s)	12, 190, 589, 662, 940
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	724, 762
HpyCH4III	ACNGT	4 cut(s)	16, 265, 398, 1187
HpyCH4IV	ACGT	2 cut(s)	99, 740
HpyCH4V	TGCA	4 cut(s)	226, 369, 486, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	265, 572, 581, 814, 903
HpyF3I	CTNAG	7 cut(s)	255, 726, 781, 909, 975, 1071, 1347
HpySE526I	ACGT	2 cut(s)	99, 740
Hsp92II	CATG	3 cut(s)	301, 522, 1318
KspAI	GTTAAC	1 cut(s)	12
Kzo9I	GATC	9 cut(s)	139, 163, 306, 336, 886, 949, 994, 1306, 1326
LguI	GCTCTTC	2 cut(s)	511, 896
LpnPI	CCDG	7 cut(s)	66, 155, 261, 585, 627, 1169, 1209
Lsp1109I	GCAGC	2 cut(s)	525, 1221
LweI	GCATC	4 cut(s)	832, 1057, 1102, 1114
MaeI	CTAG	2 cut(s)	411, 581
MaeII	ACGT	2 cut(s)	99, 740
MaeIII	GTNAC	2 cut(s)	434, 1046
MalI	GATC	9 cut(s)	141, 165, 308, 338, 888, 951, 996, 1308, 1328
MboI	GATC	9 cut(s)	139, 163, 306, 336, 886, 949, 994, 1306, 1326
MflI	RGATCY	2 cut(s)	163, 306
MhlI	GDGCHC	1 cut(s)	908
MluCI	AATT	6 cut(s)	4, 221, 240, 322, 468, 604
MlyI	GAGTC	3 cut(s)	168, 431, 1352
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	4 cut(s)	11, 72, 233, 270
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	1156
MspR9I	CCNGG	2 cut(s)	1156, 1157
Mva1269I	GAATGC	1 cut(s)	805
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	5 cut(s)	265, 572, 581, 814, 903
NciI	CCSGG	2 cut(s)	1156, 1157
NcoI	CCATGG	1 cut(s)	1314
NdeII	GATC	9 cut(s)	139, 163, 306, 336, 886, 949, 994, 1306, 1326
NlaIII	CATG	3 cut(s)	301, 522, 1318
NlaIV	GGNNCC	1 cut(s)	416
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	434
NruI	TCGCGA	1 cut(s)	548
OliI	CACNNNNGTG	1 cut(s)	98
PciSI	GCTCTTC	2 cut(s)	511, 896
PctI	GAATGC	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	540, 543, 1211
PleI	GAGTC	3 cut(s)	168, 431, 1351
PpsI	GAGTC	3 cut(s)	168, 431, 1351
PshAI	GACNNNNGTC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	908
Psp1406I	AACGTT	1 cut(s)	740
PspFI	CCCAGC	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	163, 306
RruI	TCGCGA	1 cut(s)	548
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
RseI	CAYNNNNRTG	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	908
SapI	GCTCTTC	2 cut(s)	511, 896
SaqAI	TTAA	4 cut(s)	11, 72, 233, 270
SatI	GCNGC	3 cut(s)	539, 542, 1210
Sau3AI	GATC	9 cut(s)	139, 163, 306, 336, 886, 949, 994, 1306, 1326
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	3 cut(s)	168, 431, 1352
ScrFI	CCNGG	2 cut(s)	1156, 1157
SduI	GDGCHC	1 cut(s)	908
SfaNI	GCATC	4 cut(s)	832, 1057, 1102, 1114
SfcI	CTRYAG	2 cut(s)	484, 1116
SmaI	CCCGGG	1 cut(s)	1157
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	3 cut(s)	176, 512, 793
SmoI	CTYRAG	3 cut(s)	176, 512, 793
Sse9I	AATT	6 cut(s)	4, 221, 240, 322, 468, 604
SsiI	CCGC	1 cut(s)	541
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	2 cut(s)	411, 581
SstI	GAGCTC	1 cut(s)	908
StyD4I	CCNGG	2 cut(s)	1154, 1155
StyI	CCWWGG	1 cut(s)	1314
TaaI	ACNGT	4 cut(s)	16, 265, 398, 1187
TaiI	ACGT	2 cut(s)	102, 743
TaqI	TCGA	3 cut(s)	691, 889, 1110
TasI	AATT	6 cut(s)	4, 221, 240, 322, 468, 604
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	4 cut(s)	11, 72, 233, 270
Tru9I	TTAA	4 cut(s)	11, 72, 233, 270
TscAI	CASTG	2 cut(s)	430, 762
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	2 cut(s)	538, 1209
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	5 cut(s)	17, 314, 366, 570, 846
TspGWI	ACGGA	1 cut(s)	49
TspMI	CCCGGG	1 cut(s)	1155
TspRI	CASTG	2 cut(s)	430, 762
XapI	RAATTY	2 cut(s)	4, 468
XmaI	CCCGGG	1 cut(s)	1155
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	2 cut(s)	411, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.