Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Reverse (-)

42558832 .. 42567349

Gene Structure 8518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG325200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGATGAAGTCAAGTCTATTGTGAGTTTGCGTGCATTAATTTTGAATGATAATGAGATTGCTTCGATTTGCAGACTTGAACAGATGAAAGAGTTGAACACTCTTGTTCTTTCTAAAAATCCGATTCGTGATATTGGTGATTCTTTGATGAATGTCAAATCTATCAAAAAGCTTTCTCTTTCTCACTGCCAACTTCGGAGCATACAGTCTTCGCTCAAGTCATGTGTTGAACTGAAAGAGCTGCGGCTTGCTCACAATAATATTGAGGGTCTCCCTGCTGAGTTGGCTCATAATAAGGGACTCCAGAATCTGGATCTGGGGAATAATGTGATCACAAGATGGTCGGAGCTGAAGGTGCTTGATTCCTTGGTCAATATGAAGAATCTCAATCTGCAAGGAAACCCTGTAGCTGAAAAGGATAAATTAGCAAAGAAGATTAAAAAGATGTTGCCGAACTTGCATGTTTTCAATGCAAGACCAATAGATAAATACACCAAGAATGAGAAGGGTGCCCGGGTTGATGCAGTTGATGAAGAAAAATATAGAGATTCAAAACATCAAGGGTTGGGTGAAACGAAGGATAGTAACCCTGATAATGCTGGAGAATTGGATATGAAGAGGAAATGGAATAGGGAGAAAGCAAATGAGAATGTCTCGGACCAGGAAGTTTTGGTCCAGGAGGATGAAGAAAGGGATAGCATCAAGAAAAAGAAGAGACATCAGGTTGTAAATGAAGATTTTAGTAATCTTGAAGATGCTGCAGATTTGGAGGAATCAAAGGGAAAGAAACTGAAAAAGAAAGGCCATAAAGATGATGATACGAAGGTTAAAAAGAAACTAGATAAGGTGAAGCAACAAAGTGAACTTGATATTATTGATGATGCAGACACTCCATTTTTGGAGCTCTTTTCTGATGACAAAGTGGTAGATGGTGGGGATGACGGCGAACAAGGTAAAGACAAGGCTAGTCACACAAAATTGTCAAGTGGAGTAGTAACCATCACTTCAAGTAAAGCTAAGACGCGGAGCACAGGTTCTACTTTACCGCTGTTGCCTGTAGATGAAATTGGAGTGGGTGGGCCATCAACATGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

365

Amino Acids

40.83

Weight (kDa)

6.5

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	54 - 92	3.6e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	77 - 135	1e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccII	CGCG	1 cut(s)	1024
AciI	CCGC	3 cut(s)	244, 1024, 1046
AclWI	GGATC	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	8 cut(s)	46, 80, 97, 230, 469, 552, 752, 1008
AjnI	CCWGG	2 cut(s)	660, 675
AloI	GAACNNNNNNTCC	2 cut(s)	1018, 1050
AluBI	AGCT	6 cut(s)	172, 241, 349, 410, 904, 1016
AluI	AGCT	6 cut(s)	172, 241, 349, 410, 904, 1016
Alw21I	GWGCWC	2 cut(s)	906, 1031
Alw26I	GTCTC	3 cut(s)	275, 658, 709
AlwI	GGATC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	310
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	802, 1079
ApeKI	GCWGC	2 cut(s)	241, 758
AseI	ATTAAT	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	658, 673, 1079
AsuC2I	CCSGG	2 cut(s)	514, 515
AsuHPI	GGTGA	3 cut(s)	149, 581, 859
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	2 cut(s)	658, 673
BaeGI	GKGCMC	1 cut(s)	514
BaeI	ACNNNNGTAYC	2 cut(s)	810, 843
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	906
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	906, 1031
BbvI	GCAGC	2 cut(s)	228, 745
BccI	CCATC	4 cut(s)	333, 923, 1007, 1090
BceAI	ACGGC	1 cut(s)	958
BciT130I	CCWGG	2 cut(s)	662, 677
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	514, 515
BcoDI	GTCTC	3 cut(s)	275, 658, 709
BfaI	CTAG	2 cut(s)	839, 966
BfmI	CTRYAG	3 cut(s)	405, 759, 1056
BisI	GCNGC	3 cut(s)	242, 245, 759
BlsI	GCNGC	3 cut(s)	243, 246, 760
Bme1390I	CCNGG	4 cut(s)	514, 515, 662, 677
Bme18I	GGWCC	2 cut(s)	658, 673
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	3 cut(s)	658, 673, 1079
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	4 cut(s)	514, 515, 662, 677
BmsI	GCATC	4 cut(s)	511, 708, 745, 871
BpiI	GAAGAC	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpmI	CTGGAG	2 cut(s)	287, 621
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	514, 515
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	366, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	1018, 1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	662, 677
BseDI	CCNNGG	2 cut(s)	366, 513
BseGI	GGATG	3 cut(s)	10, 688, 943
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	2 cut(s)	228, 745
Bsh1236I	CGCG	1 cut(s)	1024
BshFI	GGCC	2 cut(s)	804, 1081
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	906, 1031
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	3 cut(s)	275, 658, 709
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	804, 1081
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	3 cut(s)	514, 906, 1031
Bsp143I	GATC	2 cut(s)	313, 330
BspACI	CCGC	3 cut(s)	244, 1024, 1046
BspANI	GGCC	2 cut(s)	804, 1081
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	1024
BspLI	GGNNCC	1 cut(s)	511
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	366, 513
BssMI	GATC	2 cut(s)	313, 330
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	662, 677
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	2 cut(s)	611, 707
BstC8I	GCNNGC	2 cut(s)	33, 249
BstDEI	CTNAG	2 cut(s)	279, 1017
BstF5I	GGATG	3 cut(s)	10, 688, 943
BstFNI	CGCG	1 cut(s)	1024
BstKTI	GATC	2 cut(s)	316, 333
BstMAI	GTCTC	3 cut(s)	275, 658, 709
BstMBI	GATC	2 cut(s)	313, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 355, 457
BstNI	CCWGG	2 cut(s)	662, 677
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	4 cut(s)	512, 513, 660, 675
BstSFI	CTRYAG	3 cut(s)	405, 759, 1056
BstSLI	GKGCMC	1 cut(s)	514
BstUI	CGCG	1 cut(s)	1024
BstV1I	GCAGC	2 cut(s)	228, 745
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	1089
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	804, 1081
BtsCI	GGATG	3 cut(s)	10, 688, 943
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	33, 249
CaiI	CAGNNNCTG	1 cut(s)	310
Cfr13I	GGNCC	3 cut(s)	658, 673, 1079
Cfr9I	CCCGGG	1 cut(s)	513
CseI	GACGC	1 cut(s)	1030
CviAII	CATG	3 cut(s)	222, 461, 1089
DdeI	CTNAG	2 cut(s)	279, 1017
DpnI	GATC	2 cut(s)	315, 332
DpnII	GATC	2 cut(s)	313, 330
Eam1104I	CTCTTC	2 cut(s)	611, 707
EarI	CTCTTC	2 cut(s)	611, 707
Ecl136II	GAGCTC	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	658, 673
Eco53kI	GAGCTC	1 cut(s)	904
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	660, 675
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	225, 464, 1092
FaiI	YATR	9 cut(s)	203, 223, 291, 377, 462, 543, 614, 807, 1090
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	221, 460, 1088
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	242, 245, 759
FokI	GGATG	3 cut(s)	17, 695, 950
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	3 cut(s)	242, 245, 759
FspBI	CTAG	2 cut(s)	839, 966
GluI	GCNGC	3 cut(s)	242, 245, 759
GsuI	CTGGAG	2 cut(s)	287, 621
HaeIII	GGCC	2 cut(s)	804, 1081
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	1030
Hin1II	CATG	3 cut(s)	225, 464, 1092
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	8 cut(s)	124, 140, 300, 307, 362, 382, 548, 773
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	3 cut(s)	149, 581, 859
Hpy166II	GTNNAC	1 cut(s)	863
Hpy188I	TCNGA	5 cut(s)	123, 198, 346, 658, 913
Hpy188III	TCNNGA	5 cut(s)	128, 304, 311, 703, 749
Hpy8I	GTNNAC	1 cut(s)	863
HpyAV	CCTTC	4 cut(s)	346, 499, 571, 817
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	8 cut(s)	35, 72, 394, 460, 473, 524, 761, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 355, 457
HpyF3I	CTNAG	2 cut(s)	279, 1017
Hsp92II	CATG	3 cut(s)	225, 464, 1092
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	313, 330
LmnI	GCTCC	4 cut(s)	198, 346, 901, 1026
Lsp1109I	GCAGC	2 cut(s)	228, 745
LweI	GCATC	4 cut(s)	511, 708, 745, 871
MaeI	CTAG	2 cut(s)	839, 966
MaeIII	GTNAC	3 cut(s)	584, 968, 994
MalI	GATC	2 cut(s)	315, 332
MboI	GATC	2 cut(s)	313, 330
MboII	GAAGA	9 cut(s)	201, 391, 445, 545, 628, 698, 724, 746, 764
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	3 cut(s)	514, 906, 1031
MluCI	AATT	5 cut(s)	39, 422, 605, 977, 1065
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	4 cut(s)	259, 612, 673, 763
MseI	TTAA	3 cut(s)	38, 438, 828
MslI	CAYNNNNRTG	2 cut(s)	810, 1087
MspA1I	CMGCKG	1 cut(s)	1048
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	4 cut(s)	514, 515, 662, 677
MvaI	CCWGG	2 cut(s)	662, 677
MvnI	CGCG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	3 cut(s)	284, 355, 457
NciI	CCSGG	2 cut(s)	514, 515
NdeII	GATC	2 cut(s)	313, 330
NlaIII	CATG	3 cut(s)	225, 464, 1092
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	968
NspI	RCATGY	1 cut(s)	464
PfeI	GAWTC	7 cut(s)	124, 140, 307, 362, 382, 548, 773
PflMI	CCANNNNNTGG	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	3 cut(s)	243, 246, 760
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	906
Psp6I	CCWGG	2 cut(s)	660, 675
PspGI	CCWGG	2 cut(s)	660, 675
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	3 cut(s)	658, 673, 1079
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	313
RseI	CAYNNNNRTG	2 cut(s)	810, 1087
SacI	GAGCTC	1 cut(s)	906
SaqAI	TTAA	3 cut(s)	38, 438, 828
SatI	GCNGC	3 cut(s)	242, 245, 759
Sau3AI	GATC	2 cut(s)	313, 330
Sau96I	GGNCC	3 cut(s)	658, 673, 1079
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	4 cut(s)	514, 515, 662, 677
SduI	GDGCHC	3 cut(s)	514, 906, 1031
SfaNI	GCATC	4 cut(s)	511, 708, 745, 871
SfcI	CTRYAG	3 cut(s)	405, 759, 1056
SinI	GGWCC	2 cut(s)	658, 673
SmaI	CCCGGG	1 cut(s)	515
SmiMI	CAYNNNNRTG	2 cut(s)	810, 1087
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	39, 422, 605, 977, 1065
SsiI	CCGC	3 cut(s)	244, 1024, 1046
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	2 cut(s)	839, 966
SstI	GAGCTC	1 cut(s)	906
StyD4I	CCNGG	4 cut(s)	512, 513, 660, 675
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	39, 422, 605, 977, 1065
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	7 cut(s)	124, 140, 307, 362, 382, 548, 773
Tru1I	TTAA	3 cut(s)	38, 438, 828
Tru9I	TTAA	3 cut(s)	38, 438, 828
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	2 cut(s)	241, 758
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	9 cut(s)	21, 101, 164, 392, 546, 629, 699, 747, 1077
TspMI	CCCGGG	1 cut(s)	513
TspRI	CASTG	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	658, 673
VspI	ATTAAT	1 cut(s)	38
XceI	RCATGY	1 cut(s)	464
XmaI	CCCGGG	1 cut(s)	513
XspI	CTAG	2 cut(s)	839, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.