Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377827.1

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 801

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgaatgtcaaatctatcagaaagctttctctttctcactgccaacttcggagtatacagtcttcgctcaagtcatgtgttgaactgaaagagctgcggctcgctcacaataatattgagggtctccctgctgagttggctcataataagggactccagaatctggatctggggaataatgtgatcacaagatggtcggagctgaaggtgcttgattccttggtcaatctgaagaatctcaatctgcaaggaaaccctgtagctgaaaaggataaattagcaaagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

96

Amino Acids

10.74

Weight (kDa)

9.64

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	174
AcuI	CTGAAG	2 cut(s)	224, 251
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	83
AluBI	AGCT	4 cut(s)	25, 94, 202, 263
AluI	AGCT	4 cut(s)	25, 94, 202, 263
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	46, 78
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	186
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	2 cut(s)	95, 98
BlsI	GCNGC	2 cut(s)	96, 99
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	166, 183
BspACI	CCGC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	166, 183
BssNAI	GTATAC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	169, 186
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	166, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 208
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	163
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	6 cut(s)	25, 94, 100, 140, 202, 263
CviKI_1	RGCY	6 cut(s)	25, 94, 100, 140, 202, 263
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	2 cut(s)	168, 185
DpnII	GATC	2 cut(s)	166, 183
Eco130I	CCWWGG	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	224, 251
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	78
FaiI	YATR	3 cut(s)	56, 76, 144
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	95, 98
Fsp4HI	GCNGC	2 cut(s)	95, 98
GluI	GCNGC	2 cut(s)	95, 98
GsuI	CTGGAG	1 cut(s)	140
Hin1II	CATG	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	4 cut(s)	153, 160, 215, 235
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	4 cut(s)	20, 51, 199, 231
Hpy188III	TCNNGA	2 cut(s)	157, 164
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 208
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	166, 183
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	5 cut(s)	141, 149, 155, 170, 270
Lsp1109I	GCAGC	1 cut(s)	81
MalI	GATC	2 cut(s)	168, 185
MboI	GATC	2 cut(s)	166, 183
MboII	GAAGA	2 cut(s)	54, 244
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	137, 208
NdeII	GATC	2 cut(s)	166, 183
NlaIII	CATG	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	160, 215, 235
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	96, 99
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	166
SatI	GCNGC	2 cut(s)	95, 98
Sau3AI	GATC	2 cut(s)	166, 183
SchI	GAGTC	1 cut(s)	147
SetI	ASST	5 cut(s)	27, 96, 204, 210, 265
SfcI	CTRYAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	1 cut(s)	97
SspI	AATATT	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	60
TasI	AATT	1 cut(s)	275
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	3 cut(s)	160, 215, 235
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.