Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Forward (+)

18124055 .. 18124574

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1169000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGTGAAACCAATGGTGATATTGAAAATGCTAGTCATTCTGATACAAAGAAATCGAAATGGAAAAGGCAGGGATCAAAAGACAACACCTCAAACAATGTTGTTGTTGTCGAGGGGGATGAAAAAAGAGATCCCGTCAAGAAAAAGAACCGCAAACATCAAGTGCAAAATGAAGATGATCGTGGTAATCTTGAGAATACTGGGGATTTTGAGAAAGCATCGCAACAGAAGAAGCAGAAAAAGAGTTCAGCCCATACAGAAGACAATACCAGGGTTGGAAAGAAATCAGAGAAATCCAAGGTGAGAAAAGGTGACCTTGATGTTATCGATGATGCAGATACACCATTTTTGAAGCTTTTTTCTGTTGATGCTAAGGTTGCTGGTGAAAAAAAGGCTAAGGACAAGGTAATATTATTGGGTGGCTTAGTAACCTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

9.38

Isoelectric Point (pI)

17.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	2 cut(s)	82, 125
AgsI	TTSAA	2 cut(s)	26, 352
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
AlwI	GGATC	2 cut(s)	82, 125
AsuHPI	GGTGA	5 cut(s)	17, 29, 313, 323, 395
BbsI	GAAGAC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	227, 322, 358
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	2 cut(s)	372, 396
BpuEI	CTTGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	270, 297
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	270, 297
BseGI	GGATG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	74, 130, 178
BspACI	CCGC	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	327
BspPI	GGATC	2 cut(s)	82, 125
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	270, 297
BssMI	GATC	3 cut(s)	74, 130, 178
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	372, 396, 424
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	3 cut(s)	77, 133, 181
BstMBI	GATC	3 cut(s)	74, 130, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	327
CviJI	RGCY	4 cut(s)	251, 355, 395, 423
CviKI_1	RGCY	4 cut(s)	251, 355, 395, 423
DdeI	CTNAG	3 cut(s)	372, 396, 424
DpnI	GATC	3 cut(s)	76, 132, 180
DpnII	GATC	3 cut(s)	74, 130, 178
Eco130I	CCWWGG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaiI	YATR	1 cut(s)	255
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	353
HphI	GGTGA	5 cut(s)	17, 29, 313, 323, 395
Hpy188I	TCNGA	2 cut(s)	43, 289
Hpy188III	TCNNGA	2 cut(s)	139, 191
HpyCH4V	TGCA	2 cut(s)	166, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	372, 396, 424
Kzo9I	GATC	3 cut(s)	74, 130, 178
LpnPI	CCDG	5 cut(s)	56, 186, 256, 283, 366
LweI	GCATC	3 cut(s)	227, 322, 358
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	311, 427
MalI	GATC	3 cut(s)	76, 132, 180
MboI	GATC	3 cut(s)	74, 130, 178
MboII	GAAGA	3 cut(s)	185, 241, 272
MflI	RGATCY	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	2 cut(s)	100, 106
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	3 cut(s)	74, 130, 178
NmuCI	GTSAC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	269
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	130
Sau3AI	GATC	3 cut(s)	74, 130, 178
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	8 cut(s)	92, 303, 313, 318, 357, 378, 408, 434
SfaNI	GCATC	3 cut(s)	227, 322, 358
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SsiI	CCGC	1 cut(s)	151
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	297
TaqI	TCGA	3 cut(s)	56, 111, 327
TseFI	GTSAC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	135, 186
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.