MD03G1150100.v1.1

Protein phosphatase 1 regulatory subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
16705171 .. 16711142
5972 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1150100.v1.1.491

Sequence Viewer

Length: 1449 bp
ATGAATCGCCTGAGCTTGGAGCAGGTGCTCAAGGAAAACAACACCCGCGACCCCAACTCCATTTCAACTCTCAAGCTCAATCACAAGGCTCTCTCCGACGTTTCGTGCTTGGGCGAGTTCAACAACTTGGAGAGGCTCGACCTCAGCTTCAACAATCTCACTTCTCTCGAGGTGTTGAAGTCATGTATCAATTTAAAATGGTTATCCGTTGCGAATAATAAACTGCAGAGCCTCAAAGGAATTGAGGGACTTTCTAAGCTCACTGTGTTAAATGCTGGCAACAATAAACTTCAAGCGATGGATGAGATCAAGTCTATTGTGAGCTTACGTGCAGTAATTTTGAATGATAATGAGATTGCTTCAATTTGTAGACTTGAACCGTTGAGAGAACTAAACACTCTTGTTCTTTCTAGAAATCCGATCCGTGACATTGGTGATTCTCTGAAGAAGGTGAAATCTATCACCAAGCTTTCTCTATCTCACTGCCAACTTCAGACTTTAGAGGCCTCACTCAAGTTCTGTATTGAACTGAAAGAGCTCCGTCTTGCTCATAATGATATTAAGGGTCTCCCAACTGAGTTGGCTCTTAATAAGAAACTCCAGAATTTGGACTTGGGTAATAATGTGATCACAAGATGGTCAGATCTGAAGATAATCAATTCATTCGTCAATCTGAGGAATCTCAATCTGCAAGGAAACCCTGTTGTTGAAAAGGATAAATTAGTAAAGAAGATTAAAAAGATGTTGCCGAACCTCCATGTATTCAACGCAAGACCCATAGATAAATACATCAAGAGTGAAAGGGGCGCTAGAGGTGATGAAGTTAATAAGTCTTCACTTAATGCTGCTGACAAGCAAGAAACTCAAACAGAAGAGCCAAAAGAGAGAGACTTCAAACATCATGCAATGGGTGAAGCTAAGGGTGGCATTGAAAATGCTAGTGATTCTGATACAAAGAAATCGAAATGGAAAAGGAAGGGATCAAAAGACAATGTCTCAAACAATGACGTTGTCGAGGGGGATGAAAAAAGAGATCCGGTCAAGAAAAAGAACCACATACATCATATGCAAAATGAAGATGATCCTGGTAATCTGGAGAATGCTGGGCATTTTGAGAAAGCATTGCAACAGAAGAAGCAGAAAAAGAGTCCAGCCGACACAGAAGATAATGCTGAGGTTGGAAAGAAACCAGAGAAATCCAAGGGGAGAAAAGGTGAACTTGATGTTATCGATGATGCAGATACACCGTTTTTGGAGCTTTTTTCTGTTGATGCTGAGGTTGCTAGTGAAAAAAAGGTTAATGACAAGGTTAGGGACTTGGGTGGCTTAGTAACCTTCCCTTCTAAGAGTAAAAAAGCCAAAAACCGTCCCTCCACCGGTTCTACACTGCATCCGTCGCCTGTTGATGAAATTGGAACAGGTGGGCCATCGACATGGGGTGATGATTAA

Protein Analysis

483

Amino Acids

53.71

Weight (kDa)

9.0

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 64 - 104 8.1e-07 Leucine Rich repeats (2 copies)
LRR_4 PF12799 176 - 217 5.8e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB7I CCANNNNNTGG 1 cut(s) 607
AccI GTMKAC 1 cut(s) 370
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 46
AclWI GGATC 4 cut(s) 415, 988, 1028, 1076
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 3 cut(s) 464, 476, 668
AfiI CCNNNNNNNGG 3 cut(s) 16, 607, 1376
AgeI ACCGGT 1 cut(s) 1376
AjnI CCWGG 1 cut(s) 1084
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AluBI AGCT 9 cut(s) 15, 76, 147, 259, 324, 469, 538, 917, 1258
AluI AGCT 9 cut(s) 15, 76, 147, 259, 324, 469, 538, 917, 1258
Alw21I GWGCWC 2 cut(s) 30, 540
Alw26I GTCTC 3 cut(s) 572, 882, 1000
AlwI GGATC 4 cut(s) 415, 988, 1028, 1076
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 504, 1424
ApeKI GCWGC 1 cut(s) 845
ApoI RAATTY 1 cut(s) 604
AsiGI ACCGGT 1 cut(s) 1376
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 1 cut(s) 1424
AsuHPI GGTGA 6 cut(s) 446, 454, 463, 827, 923, 1226
AvaI CYCGRG 1 cut(s) 167
BanII GRGCYC 1 cut(s) 540
BbsI GAAGAC 1 cut(s) 825
Bbv12I GWGCWC 2 cut(s) 30, 540
BbvCI CCTCAGC 3 cut(s) 143, 1173, 1275
BbvI GCAGC 1 cut(s) 832
BccI CCATC 3 cut(s) 292, 630, 1435
BciT130I CCWGG 1 cut(s) 1086
BclI TGATCA 1 cut(s) 627
BcoDI GTCTC 3 cut(s) 572, 882, 1000
BfaI CTAG 4 cut(s) 411, 810, 939, 1284
BfmI CTRYAG 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 13
BglII AGATCT 1 cut(s) 643
BisI GCNGC 1 cut(s) 846
BlsI GCNGC 1 cut(s) 847
Bme1390I CCNGG 1 cut(s) 1086
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 1424
BmrFI CCNGG 1 cut(s) 1086
BmsI GCATC 3 cut(s) 1225, 1261, 1399
BpiI GAAGAC 1 cut(s) 825
BpmI CTGGAG 2 cut(s) 584, 1115
Bpu10I CCTNAGC 5 cut(s) 11, 143, 918, 1173, 1275
BpuEI CTTGAG 3 cut(s) 14, 56, 497
Bsa29I ATCGAT 1 cut(s) 1230
BsaAI YACGTR 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 1200
BsaWI WCCGGW 2 cut(s) 1036, 1376
BsaXI ACNNNNNCTCC 6 cut(s) 41, 71, 1198, 1228, 1355, 1385
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 607, 1376
Bse118I RCCGGY 1 cut(s) 1376
Bse3DI GCAATG 2 cut(s) 912, 1121
BseBI CCWGG 1 cut(s) 1086
BseCI ATCGAT 1 cut(s) 1230
BseDI CCNNGG 1 cut(s) 1200
BseGI GGATG 3 cut(s) 307, 1027, 1390
BseLI CCNNNNNNNGG 3 cut(s) 16, 607, 1376
BseMI GCAATG 2 cut(s) 912, 1121
BseMII CTCAG 5 cut(s) 157, 567, 665, 1164, 1266
BseXI GCAGC 1 cut(s) 832
BseYI CCCAGC 1 cut(s) 1103
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 506, 1426
BshTI ACCGGT 1 cut(s) 1376
BshVI ATCGAT 1 cut(s) 1230
BsiHKAI GWGCWC 2 cut(s) 30, 540
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 2 cut(s) 1037, 1377
BslFI GGGAC 3 cut(s) 261, 1328, 1353
BslI CCNNNNNNNGG 3 cut(s) 16, 607, 1376
BsmAI GTCTC 3 cut(s) 572, 882, 1000
BsmFI GGGAC 3 cut(s) 261, 1328, 1353
BsmI GAATGC 1 cut(s) 1105
BsnI GGCC 2 cut(s) 506, 1426
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 30, 540
Bsp143I GATC 7 cut(s) 306, 420, 627, 643, 980, 1033, 1081
BspACI CCGC 1 cut(s) 46
BspANI GGCC 2 cut(s) 506, 1426
BspCNI CTCAG 5 cut(s) 156, 568, 666, 1165, 1267
BspDI ATCGAT 1 cut(s) 1230
BspFNI CGCG 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 4 cut(s) 415, 988, 1028, 1076
BspQI GCTCTTC 1 cut(s) 867
BspTNI GGTCTC 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 912, 1121
BsrFI RCCGGY 1 cut(s) 1376
BssAI RCCGGY 1 cut(s) 1376
BssECI CCNNGG 1 cut(s) 1200
BssMI GATC 7 cut(s) 306, 420, 627, 643, 980, 1033, 1081
BssT1I CCWWGG 1 cut(s) 1200
Bst2UI CCWGG 1 cut(s) 1086
Bst4CI ACNGT 4 cut(s) 265, 381, 1248, 1367
Bst6I CTCTTC 1 cut(s) 867
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 277
BstF5I GGATG 3 cut(s) 307, 1027, 1390
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 810
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 7 cut(s) 309, 423, 630, 646, 983, 1036, 1084
BstMAI GTCTC 3 cut(s) 572, 882, 1000
BstMBI GATC 7 cut(s) 306, 420, 627, 643, 980, 1033, 1081
BstMWI GCNNNNNNNGC 2 cut(s) 1280, 1396
BstNI CCWGG 1 cut(s) 1086
BstSCI CCNGG 1 cut(s) 1084
BstSFI CTRYAG 1 cut(s) 224
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 832
BstV2I GAAGAC 1 cut(s) 825
BstX2I RGATCY 2 cut(s) 643, 1033
BstXI CCANNNNNNTGG 1 cut(s) 1434
BstYI RGATCY 2 cut(s) 643, 1033
Bsu15I ATCGAT 1 cut(s) 1230
BsuRI GGCC 2 cut(s) 506, 1426
BsuTUI ATCGAT 1 cut(s) 1230
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 3 cut(s) 307, 1027, 1390
BtsI GCAGTG 2 cut(s) 481, 1385
BtsIMutI CAGTG 3 cut(s) 261, 481, 1385
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 809
Cfr10I RCCGGY 1 cut(s) 1376
Cfr13I GGNCC 1 cut(s) 1424
ClaI ATCGAT 1 cut(s) 1230
CspAI ACCGGT 1 cut(s) 1376
CviAII CATG 4 cut(s) 183, 758, 902, 1434
DpnI GATC 7 cut(s) 308, 422, 629, 645, 982, 1035, 1083
DpnII GATC 7 cut(s) 306, 420, 627, 643, 980, 1033, 1081
DraI TTTAAA 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 867
EarI CTCTTC 1 cut(s) 867
Ecl136II GAGCTC 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 1200
Eco147I AGGCCT 1 cut(s) 506
Eco24I GRGCYC 1 cut(s) 540
Eco31I GGTCTC 1 cut(s) 572
Eco53kI GAGCTC 1 cut(s) 538
Eco57I CTGAAG 3 cut(s) 464, 476, 668
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 1084
EcoT14I CCWWGG 1 cut(s) 1200
EcoT38I GRGCYC 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 1200
FaeI CATG 4 cut(s) 186, 761, 905, 1437
FaiI YATR 9 cut(s) 184, 552, 759, 779, 903, 1058, 1065, 1067, 1435
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FaqI GGGAC 3 cut(s) 261, 1328, 1353
FatI CATG 4 cut(s) 182, 757, 901, 1433
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 1065
FbaI TGATCA 1 cut(s) 627
FblI GTMKAC 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 846
FokI GGATG 3 cut(s) 314, 1034, 1377
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 1 cut(s) 846
FspBI CTAG 4 cut(s) 411, 810, 939, 1284
GlaI GCGC 1 cut(s) 808
GluI GCNGC 1 cut(s) 846
GsaI CCCAGC 1 cut(s) 1107
GsuI CTGGAG 2 cut(s) 584, 1115
HaeII RGCGCY 1 cut(s) 810
HaeIII GGCC 2 cut(s) 506, 1426
HapII CCGG 2 cut(s) 1037, 1377
HhaI GCGC 1 cut(s) 809
Hin1II CATG 4 cut(s) 186, 761, 905, 1437
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 5 cut(s) 4, 437, 679, 944, 1147
HpaII CCGG 2 cut(s) 1037, 1377
HphI GGTGA 6 cut(s) 446, 454, 463, 827, 923, 1226
Hpy166II GTNNAC 2 cut(s) 371, 1217
Hpy188I TCNGA 8 cut(s) 97, 420, 444, 495, 643, 648, 675, 949
Hpy188III TCNNGA 6 cut(s) 167, 411, 601, 793, 1042, 1094
Hpy8I GTNNAC 2 cut(s) 371, 1217
Hpy99I CGWCG 2 cut(s) 101, 1399
HpyAV CCTTC 4 cut(s) 442, 970, 1345, 1350
HpyCH4III ACNGT 4 cut(s) 265, 381, 1248, 1367
HpyCH4IV ACGT 3 cut(s) 99, 328, 1008
HpyCH4V TGCA 8 cut(s) 226, 332, 691, 905, 1069, 1126, 1238, 1390
HpyF10VI GCNNNNNNNGC 2 cut(s) 1280, 1396
HpySE526I ACGT 3 cut(s) 99, 328, 1008
Hsp92II CATG 4 cut(s) 186, 761, 905, 1437
HspAI GCGC 1 cut(s) 807
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 7 cut(s) 306, 420, 627, 643, 980, 1033, 1081
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 3 cut(s) 19, 543, 1255
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 3 cut(s) 1225, 1261, 1399
MaeI CTAG 4 cut(s) 411, 810, 939, 1284
MaeII ACGT 3 cut(s) 99, 328, 1008
MaeIII GTNAC 2 cut(s) 425, 1330
MalI GATC 7 cut(s) 308, 422, 629, 645, 982, 1035, 1083
MboI GATC 7 cut(s) 306, 420, 627, 643, 980, 1033, 1081
MboII GAAGA 8 cut(s) 457, 661, 742, 825, 884, 1088, 1144, 1175
MflI RGATCY 2 cut(s) 643, 1033
MhlI GDGCHC 2 cut(s) 30, 540
MluCI AATT 8 cut(s) 190, 240, 336, 363, 604, 658, 719, 1410
MlyI GAGTC 1 cut(s) 1156
MmeI TCCRAC 2 cut(s) 120, 1159
MseI TTAA 9 cut(s) 194, 269, 561, 588, 735, 825, 840, 1299, 1447
MslI CAYNNNNRTG 1 cut(s) 1432
MspI CCGG 2 cut(s) 1037, 1377
MspR9I CCNGG 1 cut(s) 1086
Mva1269I GAATGC 1 cut(s) 1105
MvaI CCWGG 1 cut(s) 1086
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 1280, 1396
NdeI CATATG 1 cut(s) 1065
NdeII GATC 7 cut(s) 306, 420, 627, 643, 980, 1033, 1081
NlaIII CATG 4 cut(s) 186, 761, 905, 1437
NmuCI GTSAC 1 cut(s) 425
PaeR7I CTCGAG 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 13
PceI AGGCCT 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 867
PctI GAATGC 1 cut(s) 1105
PfeI GAWTC 4 cut(s) 4, 437, 679, 944
PflFI GACNNNGTC 2 cut(s) 992, 1010
PflMI CCANNNNNTGG 1 cut(s) 607
PinAI ACCGGT 1 cut(s) 1376
PkrI GCNGC 1 cut(s) 847
PleI GAGTC 1 cut(s) 1155
PpsI GAGTC 1 cut(s) 1155
Ppu21I YACGTR 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 1084
PspFI CCCAGC 1 cut(s) 1103
PspGI CCWGG 1 cut(s) 1084
PspPI GGNCC 1 cut(s) 1424
PstI CTGCAG 1 cut(s) 228
PsuI RGATCY 2 cut(s) 643, 1033
PsyI GACNNNGTC 2 cut(s) 992, 1010
RseI CAYNNNNRTG 1 cut(s) 1432
SacI GAGCTC 1 cut(s) 540
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 9 cut(s) 194, 269, 561, 588, 735, 825, 840, 1299, 1447
SatI GCNGC 1 cut(s) 846
Sau3AI GATC 7 cut(s) 306, 420, 627, 643, 980, 1033, 1081
Sau96I GGNCC 1 cut(s) 1424
SchI GAGTC 1 cut(s) 1156
ScrFI CCNGG 1 cut(s) 1086
SduI GDGCHC 2 cut(s) 30, 540
SfaNI GCATC 3 cut(s) 1225, 1261, 1399
SfcI CTRYAG 1 cut(s) 224
Sfr274I CTCGAG 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 1432
SmlI CTYRAG 4 cut(s) 29, 71, 167, 512
SmoI CTYRAG 4 cut(s) 29, 71, 167, 512
Sse9I AATT 8 cut(s) 190, 240, 336, 363, 604, 658, 719, 1410
SseBI AGGCCT 1 cut(s) 506
SsiI CCGC 1 cut(s) 46
SspMI CTAG 4 cut(s) 411, 810, 939, 1284
SstI GAGCTC 1 cut(s) 540
StuI AGGCCT 1 cut(s) 506
StyD4I CCNGG 1 cut(s) 1084
StyI CCWWGG 1 cut(s) 1200
TaaI ACNGT 4 cut(s) 265, 381, 1248, 1367
TaiI ACGT 3 cut(s) 102, 331, 1011
TaqI TCGA 6 cut(s) 138, 168, 962, 1014, 1230, 1430
TasI AATT 8 cut(s) 190, 240, 336, 363, 604, 658, 719, 1410
TfiI GAWTC 4 cut(s) 4, 437, 679, 944
Tru1I TTAA 9 cut(s) 194, 269, 561, 588, 735, 825, 840, 1299, 1447
Tru9I TTAA 9 cut(s) 194, 269, 561, 588, 735, 825, 840, 1299, 1447
TscAI CASTG 3 cut(s) 268, 488, 1392
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 845
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 6 cut(s) 17, 651, 834, 1038, 1089, 1422
TspGWI ACGGA 4 cut(s) 196, 413, 530, 1383
TspRI CASTG 3 cut(s) 268, 488, 1392
Tth111I GACNNNGTC 2 cut(s) 992, 1010
Van91I CCANNNNNTGG 1 cut(s) 607
XapI RAATTY 1 cut(s) 604
XbaI TCTAGA 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 370
XspI CTAG 4 cut(s) 411, 810, 939, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.