Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001035.1

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Forward (+)

216957 .. 218075

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001035.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgcaaagcgttggtgacccctacgtacaattgctagtgcaggttgatcatcaaattcatatactatcacgcgttcccaaccctaaacccggggagccggatgaagttaccgggctgaaaatatttgccgcccccaagcaaactgcgaaagcaaaaccagagcgcagcaaaactagagccaaaagcgcaagcatgaagcggttgagcttggaccaggtgctcaaggacaacaacactcgcgaccccaactccatttcttctctcatcctcactcacagggctctctccgatgtttcgtgcttgggcgagctcaagaatctggagcggctcgatctcagcgccaacacgctcacttcgcttgaggggttgaagtcatgcgccaatctgaaatggctatctgtttctcaaaataaactgcaaagcctcaagggaattgaaggactttctaagctcactgtaagtgccatacattttcccctttcttctttttcttcttcgataaacaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

169

Amino Acids

18.44

Weight (kDa)

9.58

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	325
AccII	CGCG	2 cut(s)	72, 240
AciI	CCGC	3 cut(s)	129, 199, 325
AcsI	RAATTY	1 cut(s)	54
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	370, 437
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	207, 310, 451
AluI	AGCT	3 cut(s)	207, 310, 451
Alw21I	GWGCWC	2 cut(s)	222, 312
Ama87I	CYCGRG	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	54
AspLEI	GCGC	4 cut(s)	165, 188, 341, 380
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	3 cut(s)	90, 91, 112
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	2 cut(s)	283, 312
Bbv12I	GWGCWC	2 cut(s)	222, 312
BbvI	GCAGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	3 cut(s)	90, 91, 112
BfaI	CTAG	3 cut(s)	35, 174, 508
BfoI	RGCGCY	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	129, 166, 326
BlsI	GCNGC	3 cut(s)	130, 167, 327
Bme1390I	CCNGG	4 cut(s)	90, 91, 112, 215
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	4 cut(s)	90, 91, 112, 215
BpmI	CTGGAG	1 cut(s)	341
BpuEI	CTTGAG	4 cut(s)	206, 296, 380, 410
BpuMI	CCSGG	3 cut(s)	90, 91, 112
BsaAI	YACGTR	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	89, 90
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	89, 90
BseGI	GGATG	2 cut(s)	106, 264
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	2 cut(s)	72, 240
BsiHKAI	GWGCWC	2 cut(s)	222, 312
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	3 cut(s)	90, 98, 111
BslI	CCNNNNNNNGG	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	3 cut(s)	222, 283, 312
Bsp143I	GATC	2 cut(s)	46, 331
Bsp68I	TCGCGA	1 cut(s)	240
BspACI	CCGC	3 cut(s)	129, 199, 325
BspCNI	CTCAG	1 cut(s)	348
BspFNI	CGCG	2 cut(s)	72, 240
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	89, 90
BssMI	GATC	2 cut(s)	46, 331
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	190, 308
BstDEI	CTNAG	2 cut(s)	335, 447
BstEII	GGTNACC	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	106, 264
BstFNI	CGCG	2 cut(s)	72, 240
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	4 cut(s)	165, 188, 341, 380
BstKTI	GATC	2 cut(s)	49, 334
BstMBI	GATC	2 cut(s)	46, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 355
BstNI	CCWGG	1 cut(s)	215
BstPI	GGTNACC	1 cut(s)	14
BstSCI	CCNGG	4 cut(s)	88, 89, 110, 213
BstSNI	TACGTA	1 cut(s)	25
BstUI	CGCG	2 cut(s)	72, 240
BstV1I	GCAGC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	106, 264
BtsIMutI	CAGTG	1 cut(s)	453
BtuMI	TCGCGA	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	190, 308
CfoI	GCGC	4 cut(s)	165, 188, 341, 380
Cfr13I	GGNCC	1 cut(s)	211
Cfr9I	CCCGGG	1 cut(s)	89
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	193, 375
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	335, 447
DpnI	GATC	2 cut(s)	48, 333
DpnII	GATC	2 cut(s)	46, 331
Ecl136II	GAGCTC	1 cut(s)	310
Eco105I	TACGTA	1 cut(s)	25
Eco24I	GRGCYC	2 cut(s)	283, 312
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	310
EcoO65I	GGTNACC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	213
EcoT38I	GRGCYC	2 cut(s)	283, 312
FaeI	CATG	2 cut(s)	196, 378
FaiI	YATR	5 cut(s)	60, 62, 194, 376, 467
FatI	CATG	2 cut(s)	192, 374
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	129, 166, 326
FokI	GGATG	2 cut(s)	113, 251
FriOI	GRGCYC	2 cut(s)	283, 312
Fsp4HI	GCNGC	3 cut(s)	129, 166, 326
FspBI	CTAG	3 cut(s)	35, 174, 508
GlaI	GCGC	4 cut(s)	164, 187, 340, 379
GluI	GCNGC	3 cut(s)	129, 166, 326
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	342
HapII	CCGG	3 cut(s)	90, 98, 111
HhaI	GCGC	4 cut(s)	165, 188, 341, 380
Hin1II	CATG	2 cut(s)	196, 378
Hin6I	GCGC	4 cut(s)	163, 186, 339, 378
HinP1I	GCGC	4 cut(s)	163, 186, 339, 378
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	3 cut(s)	90, 98, 111
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	289, 387
Hpy188III	TCNNGA	3 cut(s)	239, 313, 320
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	4, 40, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 355
HpyF3I	CTNAG	2 cut(s)	335, 447
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	196, 378
HspAI	GCGC	4 cut(s)	163, 186, 339, 378
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 331
LmnI	GCTCC	2 cut(s)	94, 322
LpnPI	CCDG	9 cut(s)	26, 103, 111, 124, 171, 200, 227, 262, 305
Lsp1109I	GCAGC	1 cut(s)	177
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	3 cut(s)	35, 174, 508
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	14, 106
MalI	GATC	2 cut(s)	48, 333
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	2 cut(s)	46, 331
MboII	GAAGA	4 cut(s)	249, 474, 483, 486
MfeI	CAATTG	1 cut(s)	29
MhlI	GDGCHC	3 cut(s)	222, 283, 312
MluCI	AATT	3 cut(s)	29, 54, 432
MluI	ACGCGT	1 cut(s)	70
MnlI	CCTC	3 cut(s)	278, 355, 434
MspI	CCGG	3 cut(s)	90, 98, 111
MspR9I	CCNGG	4 cut(s)	90, 91, 112, 215
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	2 cut(s)	72, 240
MwoI	GCNNNNNNNGC	2 cut(s)	185, 355
NciI	CCSGG	3 cut(s)	90, 91, 112
NdeII	GATC	2 cut(s)	46, 331
NlaIII	CATG	2 cut(s)	196, 378
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	14
NruI	TCGCGA	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	130, 167, 327
Ppu21I	YACGTR	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	211
RruI	TCGCGA	1 cut(s)	240
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	312
SatI	GCNGC	3 cut(s)	129, 166, 326
Sau3AI	GATC	2 cut(s)	46, 331
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	4 cut(s)	90, 91, 112, 215
SduI	GDGCHC	3 cut(s)	222, 283, 312
SetI	ASST	6 cut(s)	27, 45, 209, 219, 312, 453
SexAI	ACCWGGT	1 cut(s)	213
SinI	GGWCC	1 cut(s)	211
SmaI	CCCGGG	1 cut(s)	91
SmlI	CTYRAG	4 cut(s)	221, 311, 359, 425
SmoI	CTYRAG	4 cut(s)	221, 311, 359, 425
SnaBI	TACGTA	1 cut(s)	25
Sse9I	AATT	3 cut(s)	29, 54, 432
SsiI	CCGC	3 cut(s)	129, 199, 325
SspI	AATATT	1 cut(s)	123
SspMI	CTAG	3 cut(s)	35, 174, 508
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	4 cut(s)	88, 89, 110, 213
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	330, 497
TasI	AATT	3 cut(s)	29, 54, 432
TauI	GCSGC	2 cut(s)	131, 328
TfiI	GAWTC	1 cut(s)	316
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	47, 117, 209
TspMI	CCCGGG	1 cut(s)	89
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	54
XmaI	CCCGGG	1 cut(s)	89
XspI	CTAG	3 cut(s)	35, 174, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.