RchiOBHm_Chr5g0046091

Protein phosphatase 1 regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
42155383 .. 42163025
7643 bp
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UTR
Exon/CDS
Intron
PRQ32412

Sequence Viewer

Length: 1542 bp
ATGGTAAATAACTTGTGTAATTTACTAGTTCCCAACCCTAAACCCGGCGAGCCGGGTGAAGTTACCGGGCTGAAAATATTTGCCGCCCCCAAGCAAACTGCGAAAGCAAAACCAGAGCGCAGCAAAACTAGAGCCAAAAGCGCAAGCATGAAGCGGTTGAGCTTGGACCAGGTGCTCAAGGACAACAACACTCGCGACCCCTATTCCATTTCTTCTCTCATCCTCACTCACAGGGCTCTCTCCGATGTTTCGTGCTTGGGCGAGCTCAAGAATCTGGAGAGGCTCGATCTCAGCGCCAACACGCTCACTTCGCTTGAGGGGTTGAAGTCATGCGTCAATCTGAAATGGCTATCTGTTTCTCAAAATAAACTGCAAAGCCTCAAGGGAATTGAAGGACTTTCTAAGCTCACTGTGTTAAATGCAGGCAACAATAAGCTTACAGTGATGGATGAAGTCAAGTCTATTGTGAGTTTGCGTGCATTAATTTTGAATGATAATGAGATTGCTTCGATTTGCAGACTTGAACAGATGAAAGAGTTGAACACTCTTGTTCTTTCTAAAAATCCGATTCGTGATATTGGTGATTCTTTGATGAATGTCAAATCTATCAAAAAGCTTTCTCTTTCTCACTGCCAACTTCGGAGCATACAGTCTTCGCTCAAGTCATGTGTTGAACTGAAAGAGCTGCGGCTTGCTCACAATAATATTGAGGGTCTCCCTGCTGAGTTGGCTCATAATAAGGGACTCCAGAATCTGGATCTGGGGAATAATGTGATCACAAGATGGTCGGAGCTGAAGGTGCTTGATTCCTTGGTCAATATGAAGAATCTCAATCTGCAAGGAAACCCTGTAGCTGAAAAGGATAAATTAGCAAAGAAGATTAAAAAGATGTTGCCGAACTTGCATGTTTTCAATGCAAGACCAATAGATAAATACACCAAGAATGAGAAGGGTGCCCGGGTTGATGCAGTTGATGAAGAAAAATATAGAGATTCAAAACATCAAGGGTTGGGTGAAACGAAGGATAGTAACCCTGATAATGCTGGAGAATTGGATATGAAGAGGAAATGGAATAGGGAGAAAGCAAATGAGAATGTCTCGGACCAGGAAGTTTTGGTCCAGGAGGATGAAGAAAGGGATAGCATCAAGAAAAAGAAGAGACATCAGGTTGTAAATGAAGATTTTAGTAATCTTGAAGATGCTGCAGATTTGGAGGAATCAAAGGGAAAGAAACTGAAAAAGAAAGGCCATAAAGATGATGATACGAAGGTTAAAAAGAAACTAGATAAGGTGAAGCAACAAAGTGAACTTGATATTATTGATGATGCAGACACTCCATTTTTGGAGCTCTTTTCTGATGACAAAGTGGTAGATGGTGGGGATGACGGCGAACAAGGTAAAGACAAGGCTAGTCACACAAAATTGTCAAGTGGAGTAGTAACCATCACTTCAAGTAAAGCTAAGACGCGGAGCACAGGTTCTACTTTACCGCTGTTGCCTGTAGATGAAATTGGAGTGGGTGGGCCATCAACATGGGACTGA

Protein Analysis

513

Amino Acids

56.87

Weight (kDa)

8.85

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 202 - 240 5.7e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 225 - 283 1.7e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 953
AccB7I CCANNNNNTGG 1 cut(s) 754
AccII CGCG 2 cut(s) 195, 1468
AciI CCGC 5 cut(s) 84, 154, 688, 1468, 1490
AclWI GGATC 1 cut(s) 765
AcuI CTGAAG 1 cut(s) 815
AfiI CCNNNNNNNGG 2 cut(s) 44, 754
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 3 cut(s) 168, 1104, 1119
AloI GAACNNNNNNTCC 2 cut(s) 1462, 1494
Alw21I GWGCWC 4 cut(s) 177, 267, 1350, 1475
Alw26I GTCTC 3 cut(s) 719, 1102, 1153
AlwI GGATC 1 cut(s) 765
AlwNI CAGNNNCTG 1 cut(s) 754
Ama87I CYCGRG 1 cut(s) 957
AoxI GGCC 2 cut(s) 1246, 1523
ApeKI GCWGC 3 cut(s) 120, 685, 1202
AseI ATTAAT 1 cut(s) 482
AspLEI GCGC 3 cut(s) 120, 143, 296
AspS9I GGNCC 4 cut(s) 166, 1102, 1117, 1523
AsuC2I CCSGG 5 cut(s) 45, 54, 67, 958, 959
AsuHPI GGTGA 4 cut(s) 68, 593, 1025, 1303
AvaI CYCGRG 1 cut(s) 957
AvaII GGWCC 3 cut(s) 166, 1102, 1117
BaeGI GKGCMC 1 cut(s) 958
BaeI ACNNNNGTAYC 2 cut(s) 1254, 1287
BanI GGYRCC 1 cut(s) 953
BanII GRGCYC 3 cut(s) 238, 267, 1350
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 4 cut(s) 177, 267, 1350, 1475
BbvI GCAGC 3 cut(s) 132, 672, 1189
BccI CCATC 5 cut(s) 439, 777, 1367, 1451, 1534
BceAI ACGGC 1 cut(s) 1402
BciT130I CCWGG 3 cut(s) 170, 1106, 1121
BclI TGATCA 1 cut(s) 774
BcnI CCSGG 5 cut(s) 45, 54, 67, 958, 959
BcoDI GTCTC 3 cut(s) 719, 1102, 1153
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 4 cut(s) 26, 129, 1283, 1410
BfmI CTRYAG 3 cut(s) 849, 1203, 1500
BfoI RGCGCY 1 cut(s) 297
BisI GCNGC 5 cut(s) 84, 121, 686, 689, 1203
BlsI GCNGC 5 cut(s) 85, 122, 687, 690, 1204
Bme1390I CCNGG 8 cut(s) 45, 54, 67, 170, 958, 959, 1106, 1121
Bme18I GGWCC 3 cut(s) 166, 1102, 1117
BmeT110I CYCGRG 1 cut(s) 957
BmgT120I GGNCC 4 cut(s) 166, 1102, 1117, 1523
BmiI GGNNCC 1 cut(s) 955
BmrFI CCNGG 8 cut(s) 45, 54, 67, 170, 958, 959, 1106, 1121
BmsI GCATC 4 cut(s) 955, 1152, 1189, 1315
BpiI GAAGAC 1 cut(s) 645
BplI GAGNNNNNCTC 2 cut(s) 1082, 1114
BpmI CTGGAG 3 cut(s) 296, 731, 1065
BpuEI CTTGAG 5 cut(s) 161, 251, 335, 365, 644
BpuMI CCSGG 5 cut(s) 45, 54, 67, 958, 959
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 2 cut(s) 810, 957
BsaXI ACNNNNNCTCC 2 cut(s) 1462, 1492
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 754
BseBI CCWGG 3 cut(s) 170, 1106, 1121
BseDI CCNNGG 2 cut(s) 810, 957
BseGI GGATG 4 cut(s) 219, 454, 1132, 1387
BseLI CCNNNNNNNGG 2 cut(s) 44, 754
BseMII CTCAG 2 cut(s) 304, 714
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 3 cut(s) 132, 672, 1189
Bsh1236I CGCG 2 cut(s) 195, 1468
BshFI GGCC 2 cut(s) 1248, 1525
BshNI GGYRCC 1 cut(s) 953
BsiHKAI GWGCWC 4 cut(s) 177, 267, 1350, 1475
BsiHKCI CYCGRG 1 cut(s) 957
BsiSI CCGG 4 cut(s) 45, 53, 66, 958
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 2 cut(s) 44, 754
BsmAI GTCTC 3 cut(s) 719, 1102, 1153
BsmFI GGGAC 1 cut(s) 756
BsnI GGCC 2 cut(s) 1248, 1525
Bso31I GGTCTC 1 cut(s) 719
BsoBI CYCGRG 1 cut(s) 957
Bsp1286I GDGCHC 6 cut(s) 177, 238, 267, 958, 1350, 1475
Bsp143I GATC 3 cut(s) 286, 757, 774
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 5 cut(s) 84, 154, 688, 1468, 1490
BspANI GGCC 2 cut(s) 1248, 1525
BspCNI CTCAG 2 cut(s) 303, 715
BspFNI CGCG 2 cut(s) 195, 1468
BspLI GGNNCC 1 cut(s) 955
BspMAI CTGCAG 1 cut(s) 1207
BspPI GGATC 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 953
BspTNI GGTCTC 1 cut(s) 719
BssECI CCNNGG 2 cut(s) 810, 957
BssMI GATC 3 cut(s) 286, 757, 774
BssT1I CCWWGG 1 cut(s) 810
Bst2UI CCWGG 3 cut(s) 170, 1106, 1121
Bst4CI ACNGT 3 cut(s) 412, 442, 651
Bst6I CTCTTC 2 cut(s) 1055, 1151
BstC8I GCNNGC 6 cut(s) 50, 145, 263, 424, 477, 693
BstDEI CTNAG 4 cut(s) 290, 402, 723, 1461
BstF5I GGATG 4 cut(s) 219, 454, 1132, 1387
BstFNI CGCG 2 cut(s) 195, 1468
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 3 cut(s) 120, 143, 296
BstKTI GATC 3 cut(s) 289, 760, 777
BstMAI GTCTC 3 cut(s) 719, 1102, 1153
BstMBI GATC 3 cut(s) 286, 757, 774
BstMWI GCNNNNNNNGC 5 cut(s) 140, 310, 728, 799, 901
BstNI CCWGG 3 cut(s) 170, 1106, 1121
BstNSI RCATGY 1 cut(s) 908
BstSCI CCNGG 8 cut(s) 43, 52, 65, 168, 956, 957, 1104, 1119
BstSFI CTRYAG 3 cut(s) 849, 1203, 1500
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 2 cut(s) 195, 1468
BstV1I GCAGC 3 cut(s) 132, 672, 1189
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 757
BstXI CCANNNNNNTGG 1 cut(s) 1533
BstYI RGATCY 1 cut(s) 757
BsuRI GGCC 2 cut(s) 1248, 1525
BtsCI GGATG 4 cut(s) 219, 454, 1132, 1387
BtsI GCAGTG 1 cut(s) 628
BtsIMutI CAGTG 3 cut(s) 408, 447, 628
BtuMI TCGCGA 1 cut(s) 195
Cac8I GCNNGC 6 cut(s) 50, 145, 263, 424, 477, 693
CaiI CAGNNNCTG 1 cut(s) 754
CfoI GCGC 3 cut(s) 120, 143, 296
Cfr13I GGNCC 4 cut(s) 166, 1102, 1117, 1523
Cfr9I CCCGGG 1 cut(s) 957
CseI GACGC 2 cut(s) 322, 1474
CsiI ACCWGGT 1 cut(s) 168
CviAII CATG 5 cut(s) 148, 330, 666, 905, 1533
DdeI CTNAG 4 cut(s) 290, 402, 723, 1461
DpnI GATC 3 cut(s) 288, 759, 776
DpnII GATC 3 cut(s) 286, 757, 774
Eam1104I CTCTTC 2 cut(s) 1055, 1151
EarI CTCTTC 2 cut(s) 1055, 1151
Ecl136II GAGCTC 2 cut(s) 265, 1348
Eco130I CCWWGG 1 cut(s) 810
Eco24I GRGCYC 3 cut(s) 238, 267, 1350
Eco31I GGTCTC 1 cut(s) 719
Eco47I GGWCC 3 cut(s) 166, 1102, 1117
Eco53kI GAGCTC 2 cut(s) 265, 1348
Eco57I CTGAAG 1 cut(s) 815
Eco88I CYCGRG 1 cut(s) 957
EcoICRI GAGCTC 2 cut(s) 265, 1348
EcoRII CCWGG 3 cut(s) 168, 1104, 1119
EcoT14I CCWWGG 1 cut(s) 810
EcoT38I GRGCYC 3 cut(s) 238, 267, 1350
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 5 cut(s) 151, 333, 669, 908, 1536
FaqI GGGAC 1 cut(s) 756
FatI CATG 5 cut(s) 147, 329, 665, 904, 1532
FbaI TGATCA 1 cut(s) 774
Fnu4HI GCNGC 5 cut(s) 84, 121, 686, 689, 1203
FokI GGATG 4 cut(s) 206, 461, 1139, 1394
FriOI GRGCYC 3 cut(s) 238, 267, 1350
Fsp4HI GCNGC 5 cut(s) 84, 121, 686, 689, 1203
FspBI CTAG 4 cut(s) 26, 129, 1283, 1410
GlaI GCGC 3 cut(s) 119, 142, 295
GluI GCNGC 5 cut(s) 84, 121, 686, 689, 1203
GsuI CTGGAG 3 cut(s) 296, 731, 1065
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 2 cut(s) 1248, 1525
HapII CCGG 4 cut(s) 45, 53, 66, 958
HgaI GACGC 2 cut(s) 322, 1474
HhaI GCGC 3 cut(s) 120, 143, 296
Hin1II CATG 5 cut(s) 151, 333, 669, 908, 1536
Hin6I GCGC 3 cut(s) 118, 141, 294
HinP1I GCGC 3 cut(s) 118, 141, 294
HindIII AAGCTT 2 cut(s) 434, 614
HinfI GANTC 9 cut(s) 271, 568, 584, 744, 751, 806, 826, 992, 1217
HpaII CCGG 4 cut(s) 45, 53, 66, 958
HphI GGTGA 4 cut(s) 68, 593, 1025, 1303
Hpy166II GTNNAC 1 cut(s) 1307
Hpy188I TCNGA 7 cut(s) 244, 342, 567, 642, 790, 1102, 1357
Hpy188III TCNNGA 8 cut(s) 194, 268, 275, 572, 748, 755, 1147, 1193
Hpy8I GTNNAC 1 cut(s) 1307
HpyAV CCTTC 5 cut(s) 386, 790, 943, 1015, 1261
HpyCH4III ACNGT 3 cut(s) 412, 442, 651
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 310, 728, 799, 901
HpyF3I CTNAG 4 cut(s) 290, 402, 723, 1461
Hsp92II CATG 5 cut(s) 151, 333, 669, 908, 1536
HspAI GCGC 3 cut(s) 118, 141, 294
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 3 cut(s) 286, 757, 774
LmnI GCTCC 4 cut(s) 642, 790, 1345, 1470
Lsp1109I GCAGC 3 cut(s) 132, 672, 1189
LweI GCATC 4 cut(s) 955, 1152, 1189, 1315
MabI ACCWGGT 1 cut(s) 168
MaeI CTAG 4 cut(s) 26, 129, 1283, 1410
MaeIII GTNAC 4 cut(s) 61, 1028, 1412, 1438
MalI GATC 3 cut(s) 288, 759, 776
MboI GATC 3 cut(s) 286, 757, 774
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 6 cut(s) 177, 238, 267, 958, 1350, 1475
MluCI AATT 7 cut(s) 19, 387, 483, 866, 1049, 1421, 1509
MlyI GAGTC 1 cut(s) 738
MmeI TCCRAC 1 cut(s) 768
MnlI CCTC 8 cut(s) 233, 273, 310, 389, 703, 1056, 1117, 1207
MseI TTAA 4 cut(s) 416, 482, 882, 1272
MslI CAYNNNNRTG 2 cut(s) 1254, 1531
MspA1I CMGCKG 1 cut(s) 1492
MspI CCGG 4 cut(s) 45, 53, 66, 958
MspR9I CCNGG 8 cut(s) 45, 54, 67, 170, 958, 959, 1106, 1121
MvaI CCWGG 3 cut(s) 170, 1106, 1121
MvnI CGCG 2 cut(s) 195, 1468
MwoI GCNNNNNNNGC 5 cut(s) 140, 310, 728, 799, 901
NciI CCSGG 5 cut(s) 45, 54, 67, 958, 959
NdeII GATC 3 cut(s) 286, 757, 774
NlaIII CATG 5 cut(s) 151, 333, 669, 908, 1536
NlaIV GGNNCC 1 cut(s) 955
NmuCI GTSAC 1 cut(s) 1412
NruI TCGCGA 1 cut(s) 195
NspI RCATGY 1 cut(s) 908
PfeI GAWTC 8 cut(s) 271, 568, 584, 751, 806, 826, 992, 1217
PflMI CCANNNNNTGG 1 cut(s) 754
PfoI TCCNGGA 1 cut(s) 1119
PkrI GCNGC 5 cut(s) 85, 122, 687, 690, 1204
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
PshBI ATTAAT 1 cut(s) 482
Psp124BI GAGCTC 2 cut(s) 267, 1350
Psp6I CCWGG 3 cut(s) 168, 1104, 1119
PspGI CCWGG 3 cut(s) 168, 1104, 1119
PspN4I GGNNCC 1 cut(s) 955
PspPI GGNCC 4 cut(s) 166, 1102, 1117, 1523
PstI CTGCAG 1 cut(s) 1207
PstNI CAGNNNCTG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 757
RruI TCGCGA 1 cut(s) 195
RseI CAYNNNNRTG 2 cut(s) 1254, 1531
SacI GAGCTC 2 cut(s) 267, 1350
SaqAI TTAA 4 cut(s) 416, 482, 882, 1272
SatI GCNGC 5 cut(s) 84, 121, 686, 689, 1203
Sau3AI GATC 3 cut(s) 286, 757, 774
Sau96I GGNCC 4 cut(s) 166, 1102, 1117, 1523
SchI GAGTC 1 cut(s) 738
ScrFI CCNGG 8 cut(s) 45, 54, 67, 170, 958, 959, 1106, 1121
SduI GDGCHC 6 cut(s) 177, 238, 267, 958, 1350, 1475
SexAI ACCWGGT 1 cut(s) 168
SfaNI GCATC 4 cut(s) 955, 1152, 1189, 1315
SfcI CTRYAG 3 cut(s) 849, 1203, 1500
SinI GGWCC 3 cut(s) 166, 1102, 1117
SmaI CCCGGG 1 cut(s) 959
SmiMI CAYNNNNRTG 2 cut(s) 1254, 1531
SmlI CTYRAG 5 cut(s) 176, 266, 314, 380, 659
SmoI CTYRAG 5 cut(s) 176, 266, 314, 380, 659
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 7 cut(s) 19, 387, 483, 866, 1049, 1421, 1509
SsiI CCGC 5 cut(s) 84, 154, 688, 1468, 1490
SspI AATATT 2 cut(s) 78, 706
SspMI CTAG 4 cut(s) 26, 129, 1283, 1410
SstI GAGCTC 2 cut(s) 267, 1350
StyD4I CCNGG 8 cut(s) 43, 52, 65, 168, 956, 957, 1104, 1119
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 3 cut(s) 412, 442, 651
TaqI TCGA 2 cut(s) 285, 509
TasI AATT 7 cut(s) 19, 387, 483, 866, 1049, 1421, 1509
TauI GCSGC 2 cut(s) 86, 691
TfiI GAWTC 8 cut(s) 271, 568, 584, 751, 806, 826, 992, 1217
Tru1I TTAA 4 cut(s) 416, 482, 882, 1272
Tru9I TTAA 4 cut(s) 416, 482, 882, 1272
TscAI CASTG 3 cut(s) 415, 447, 635
TseFI GTSAC 1 cut(s) 1412
TseI GCWGC 3 cut(s) 120, 685, 1202
Tsp45I GTSAC 1 cut(s) 1412
TspMI CCCGGG 1 cut(s) 957
TspRI CASTG 3 cut(s) 415, 447, 635
Van91I CCANNNNNTGG 1 cut(s) 754
VpaK11BI GGWCC 3 cut(s) 166, 1102, 1117
VspI ATTAAT 1 cut(s) 482
XceI RCATGY 1 cut(s) 908
XmaI CCCGGG 1 cut(s) 957
XspI CTAG 4 cut(s) 26, 129, 1283, 1410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.