Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Reverse (-)

37278008 .. 37279570

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGAGAGTTAGTGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAGAGAAGAAGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATTGTTATGCAAAAGCACGTTCGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACAACATCTGCTGGAATCATGGATCACGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGGAAGCATTGGAACATTTGGCATCTATTGATCTGATTAATCTATGTCACCCAACTGAGTTGGCTCATAATAAGAAAGTCCAGAATCTGCATTTGGGGAATGATGTGATCACTAGATGGTCAGATCTGAAGGTACTTGATTCATTGGTTACTCTGAAAAATCTCAATCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0009506 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

183

Amino Acids

20.67

Weight (kDa)

9.63

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	7 - 125	7e-16	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	53, 521
AfaI	GTAC	2 cut(s)	44, 507
AgsI	TTSAA	3 cut(s)	22, 194, 263
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	83
AseI	ATTAAT	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	16, 413
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BauI	CACGAG	1 cut(s)	341
BccI	CCATC	1 cut(s)	483
BceAI	ACGGC	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	296
BclI	TGATCA	2 cut(s)	78, 480
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	3 cut(s)	276, 351, 486
BfuI	GTATCC	1 cut(s)	296
BglII	AGATCT	2 cut(s)	173, 496
BmsI	GCATC	2 cut(s)	16, 404
BsaJI	CCNNGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	78, 173, 337, 403, 480, 496
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	75
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	6 cut(s)	78, 173, 337, 403, 480, 496
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	429
BstKTI	GATC	6 cut(s)	81, 176, 340, 406, 483, 499
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	6 cut(s)	78, 173, 337, 403, 480, 496
BstNSI	RCATGY	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	173, 496
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	2 cut(s)	173, 496
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	43, 506
CviAII	CATG	3 cut(s)	40, 76, 334
CviJI	RGCY	6 cut(s)	85, 208, 267, 275, 350, 437
CviKI_1	RGCY	6 cut(s)	85, 208, 267, 275, 350, 437
CviQI	GTAC	2 cut(s)	43, 506
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	6 cut(s)	80, 175, 339, 405, 482, 498
DpnII	GATC	6 cut(s)	78, 173, 337, 403, 480, 496
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	53, 521
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	43, 79, 337
FaiI	YATR	8 cut(s)	41, 77, 122, 141, 159, 335, 418, 441
FatI	CATG	3 cut(s)	39, 75, 333
FbaI	TGATCA	2 cut(s)	78, 480
FspBI	CTAG	3 cut(s)	276, 351, 486
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	43, 79, 337
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	3 cut(s)	330, 457, 512
HphI	GGTGA	2 cut(s)	16, 413
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	6 cut(s)	33, 408, 496, 501, 528, 543
Hpy188III	TCNNGA	5 cut(s)	76, 177, 291, 341, 454
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	4 cut(s)	52, 96, 257, 496
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	124, 463
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	43, 79, 337
Ksp22I	TGATCA	2 cut(s)	78, 480
Kzo9I	GATC	6 cut(s)	78, 173, 337, 403, 480, 496
LguI	GCTCTTC	1 cut(s)	29
LpnPI	CCDG	6 cut(s)	56, 67, 162, 253, 312, 467
LweI	GCATC	2 cut(s)	16, 404
MaeI	CTAG	3 cut(s)	276, 351, 486
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	419, 520
MalI	GATC	6 cut(s)	80, 175, 339, 405, 482, 498
MboI	GATC	6 cut(s)	78, 173, 337, 403, 480, 496
MboII	GAAGA	3 cut(s)	46, 67, 275
MflI	RGATCY	2 cut(s)	173, 496
MnlI	CCTC	3 cut(s)	198, 243, 337
MseI	TTAA	1 cut(s)	411
NdeII	GATC	6 cut(s)	78, 173, 337, 403, 480, 496
NlaIII	CATG	3 cut(s)	43, 79, 337
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	330, 457, 512
PshBI	ATTAAT	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	2 cut(s)	173, 496
RsaI	GTAC	2 cut(s)	44, 507
RsaNI	GTAC	2 cut(s)	43, 506
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	411
Sau3AI	GATC	6 cut(s)	78, 173, 337, 403, 480, 496
SetI	ASST	5 cut(s)	75, 99, 135, 352, 507
SfaNI	GCATC	2 cut(s)	16, 404
SseBI	AGGCCT	1 cut(s)	85
SspMI	CTAG	3 cut(s)	276, 351, 486
StuI	AGGCCT	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	330, 457, 512
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	276
VspI	ATTAAT	1 cut(s)	411
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	3 cut(s)	276, 351, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.