Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Forward (+)

9570387 .. 9575624

Gene Structure 5238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGAATCGTCTGAGCTTGGAGCAGGTGCTCAAGGAAAACAACACCCGCGACCCCAACTCCATTTCAACCCTCAAGCTCAATCACAAGGCTCTCTCCGACGTTTCGTGCTTGGGCGAGTTCAACAACTTGGAGAGGCTCGACCTCAGCTTCAACAATCTCACTTCTCTCGAGGGGTTGAAGTCATGTATCAATTTAAAATGGTTATCCGTTGCGAATAATAAACTGCAGAGCCTCAAAGGAATTGAGGGACTTTCTAAGCTCACTGTGTTAAATGCTGGCAACAATAAACTTCAGGCGATGGATGAGATCAAATCTATTGTGGGCTTACGTGCAGTAATTTTGAATGATAATGAGATTGCTTCAATTTGCAGACTTGAACCGTTGAGAGAACTAAACACTCTTGTTCTTTCTAAAAATCCGATCCGTGACATTGGTGATTCTCTGAAGAAGGTGAAATCTATCACAAAGCTTTCTCTATCTCACTGCCAACTTCAGACTATAGAGGCTTCACTCAAGTTCTGTATTGAACTGAAAGAGCTCCGTCTTGCTCATAATGATATTAAGGGTCTCCCAACCGAGTTGGCTCTTAATAAGAAACTCCAGAATTTGGACTTGGGTAATAATGTGATCGCAAGATGGTCAGATCTGAAGATAATCAATTCATTGGTAAATCTGAGGAATCTCAATCTGCAAGGAAACCCTGTTGTTGAAAAGGATAAATTAGTAAAGAAGATTAAAAAGATGTTGCCGAACCTCCATGTATTCAACGCAAGACCTATAGATAAAAACATCAAGAGTGAAAAGGGCGCTAGAGCTGATGAAGTTAATAAGTCTACACTTAATGCTGCTGACAAGCAAGAAACTCAAACAGAAGAGCCAAAGGAGAGAGACTTCAAACATCATGCAATGGGTGAAGCTAAGGGTGGTATTGAAAATGCTAGTGATTCTGATACAAAGAAATCGAAACGGAAAAGGAAGGGATCAAAAGACAATGTCTCAAACAATGACGTTGTTGTCGAGGGGGATGAAAAAAGAGATTCTGTCAAGAAAAAGAACCGCATACATCATATGCAAAATGAAGATGATCCTGGTAATCTGGAGAATGCTGGGCATTTTGAGAAAGCATTGCAACAGAAGAAGCAGAAAAAGAGTCCAGCCGACACAGAAGATAATGCTGAGGTTGGAAAGAAACCAGAGAAATCCAAGGGGAGAAAAGGTGAACTTGATGTTATTGATGATGCAGATACACCGTTTTTGGAGCTTTTTTCTGTTGATGCTGAGGTTGCTAGTGAGAAAAAGGTTAATGACAAGGTTAGGGACTTGGGTGGCTTAGTAACCTTCCCTTCTAAGAGTAAAAAAGCTAAAAACCGTCCCTCCACAGGTTCTACACTGCATCCGTCGCCTGTTGATGAAATTGGAACAGGTGGGCCATCGACATGGGGTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

484

Amino Acids

53.57

Weight (kDa)

9.12

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	13
AasI	GACNNNNNNGTC	1 cut(s)	1013
Acc36I	ACCTGC	1 cut(s)	13
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccI	GTMKAC	1 cut(s)	833
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	46, 1057
AclWI	GGATC	3 cut(s)	415, 988, 1079
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	4 cut(s)	275, 464, 476, 668
AfiI	CCNNNNNNNGG	2 cut(s)	607, 1379
AjnI	CCWGG	1 cut(s)	1087
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
Alw21I	GWGCWC	2 cut(s)	30, 540
Alw26I	GTCTC	3 cut(s)	572, 882, 1000
AlwI	GGATC	3 cut(s)	415, 988, 1079
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	1427
ApeKI	GCWGC	1 cut(s)	845
ApoI	RAATTY	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	809
AspS9I	GGNCC	1 cut(s)	1427
AsuHPI	GGTGA	4 cut(s)	446, 463, 923, 1229
AvaI	CYCGRG	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	30, 540
BbvCI	CCTCAGC	3 cut(s)	143, 1176, 1278
BbvI	GCAGC	1 cut(s)	832
BccI	CCATC	3 cut(s)	292, 630, 1438
BciT130I	CCWGG	1 cut(s)	1089
BcoDI	GTCTC	3 cut(s)	572, 882, 1000
BfaI	CTAG	3 cut(s)	810, 939, 1287
BfmI	CTRYAG	3 cut(s)	224, 498, 777
BfoI	RGCGCY	1 cut(s)	810
BfuAI	ACCTGC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	1 cut(s)	846
BlsI	GCNGC	1 cut(s)	847
Bme1390I	CCNGG	1 cut(s)	1089
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	1427
BmrFI	CCNGG	1 cut(s)	1089
BmsI	GCATC	3 cut(s)	1228, 1264, 1402
BpmI	CTGGAG	2 cut(s)	584, 1118
Bpu10I	CCTNAGC	4 cut(s)	143, 918, 1176, 1278
BpuEI	CTTGAG	3 cut(s)	14, 56, 497
BsaAI	YACGTR	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	1203
BsaXI	ACNNNNNCTCC	6 cut(s)	41, 71, 1201, 1231, 1358, 1388
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 1379
Bse3DI	GCAATG	2 cut(s)	912, 1124
BseBI	CCWGG	1 cut(s)	1089
BseDI	CCNNGG	1 cut(s)	1203
BseGI	GGATG	3 cut(s)	307, 1030, 1393
BseLI	CCNNNNNNNGG	2 cut(s)	607, 1379
BseMI	GCAATG	2 cut(s)	912, 1124
BseMII	CTCAG	4 cut(s)	157, 665, 1167, 1269
BseXI	GCAGC	1 cut(s)	832
BseYI	CCCAGC	1 cut(s)	1106
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	1429
BsiHKAI	GWGCWC	2 cut(s)	30, 540
BsiHKCI	CYCGRG	1 cut(s)	167
BslFI	GGGAC	3 cut(s)	261, 1331, 1356
BslI	CCNNNNNNNGG	2 cut(s)	607, 1379
BsmAI	GTCTC	3 cut(s)	572, 882, 1000
BsmFI	GGGAC	3 cut(s)	261, 1331, 1356
BsmI	GAATGC	1 cut(s)	1108
BsnI	GGCC	1 cut(s)	1429
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	30, 540
Bsp143I	GATC	6 cut(s)	306, 420, 627, 643, 980, 1084
BspACI	CCGC	2 cut(s)	46, 1057
BspANI	GGCC	1 cut(s)	1429
BspCNI	CTCAG	4 cut(s)	156, 666, 1168, 1270
BspFNI	CGCG	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	3 cut(s)	415, 988, 1079
BspQI	GCTCTTC	1 cut(s)	867
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	2 cut(s)	912, 1124
BssECI	CCNNGG	1 cut(s)	1203
BssMI	GATC	6 cut(s)	306, 420, 627, 643, 980, 1084
BssT1I	CCWWGG	1 cut(s)	1203
Bst2UI	CCWGG	1 cut(s)	1089
Bst4CI	ACNGT	4 cut(s)	265, 381, 1251, 1370
Bst6I	CTCTTC	1 cut(s)	867
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	9 cut(s)	11, 143, 255, 674, 918, 1176, 1278, 1330, 1347
BstF5I	GGATG	3 cut(s)	307, 1030, 1393
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	810
BstHHI	GCGC	1 cut(s)	809
BstKTI	GATC	6 cut(s)	309, 423, 630, 646, 983, 1087
BstMAI	GTCTC	3 cut(s)	572, 882, 1000
BstMBI	GATC	6 cut(s)	306, 420, 627, 643, 980, 1084
BstMWI	GCNNNNNNNGC	2 cut(s)	1283, 1399
BstNI	CCWGG	1 cut(s)	1089
BstSCI	CCNGG	1 cut(s)	1087
BstSFI	CTRYAG	3 cut(s)	224, 498, 777
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	832
BstX2I	RGATCY	1 cut(s)	643
BstXI	CCANNNNNNTGG	1 cut(s)	1437
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	1 cut(s)	1429
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	307, 1030, 1393
BtsI	GCAGTG	2 cut(s)	481, 1388
BtsIMutI	CAGTG	3 cut(s)	261, 481, 1388
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	809
Cfr13I	GGNCC	1 cut(s)	1427
CviAII	CATG	4 cut(s)	183, 758, 902, 1437
DdeI	CTNAG	9 cut(s)	11, 143, 255, 674, 918, 1176, 1278, 1330, 1347
DpnI	GATC	6 cut(s)	308, 422, 629, 645, 982, 1086
DpnII	GATC	6 cut(s)	306, 420, 627, 643, 980, 1084
DraI	TTTAAA	1 cut(s)	195
DrdI	GACNNNNNNGTC	1 cut(s)	1013
DseDI	GACNNNNNNGTC	1 cut(s)	1013
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	1203
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	4 cut(s)	275, 464, 476, 668
Eco88I	CYCGRG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	1087
EcoT14I	CCWWGG	1 cut(s)	1203
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	1203
FaeI	CATG	4 cut(s)	186, 761, 905, 1440
FalI	AAGNNNNNCTT	2 cut(s)	1206, 1238
FaqI	GGGAC	3 cut(s)	261, 1331, 1356
FatI	CATG	4 cut(s)	182, 757, 901, 1436
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	1068
FblI	GTMKAC	1 cut(s)	833
Fnu4HI	GCNGC	1 cut(s)	846
FokI	GGATG	3 cut(s)	314, 1037, 1380
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	1 cut(s)	846
FspBI	CTAG	3 cut(s)	810, 939, 1287
GlaI	GCGC	1 cut(s)	808
GluI	GCNGC	1 cut(s)	846
GsaI	CCCAGC	1 cut(s)	1110
GsuI	CTGGAG	2 cut(s)	584, 1118
HaeII	RGCGCY	1 cut(s)	810
HaeIII	GGCC	1 cut(s)	1429
HhaI	GCGC	1 cut(s)	809
Hin1II	CATG	4 cut(s)	186, 761, 905, 1440
Hin6I	GCGC	1 cut(s)	807
HinP1I	GCGC	1 cut(s)	807
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	6 cut(s)	4, 437, 679, 944, 1037, 1150
HphI	GGTGA	4 cut(s)	446, 463, 923, 1229
Hpy166II	GTNNAC	2 cut(s)	834, 1220
Hpy188I	TCNGA	9 cut(s)	12, 97, 420, 444, 495, 643, 648, 675, 949
Hpy188III	TCNNGA	5 cut(s)	167, 601, 793, 1045, 1097
Hpy8I	GTNNAC	2 cut(s)	834, 1220
Hpy99I	CGWCG	2 cut(s)	101, 1402
HpyAV	CCTTC	4 cut(s)	442, 970, 1348, 1353
HpyCH4III	ACNGT	4 cut(s)	265, 381, 1251, 1370
HpyCH4IV	ACGT	3 cut(s)	99, 328, 1008
HpyCH4V	TGCA	9 cut(s)	226, 332, 369, 691, 905, 1072, 1129, 1241, 1393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1283, 1399
HpyF3I	CTNAG	9 cut(s)	11, 143, 255, 674, 918, 1176, 1278, 1330, 1347
HpySE526I	ACGT	3 cut(s)	99, 328, 1008
Hsp92II	CATG	4 cut(s)	186, 761, 905, 1440
HspAI	GCGC	1 cut(s)	807
Kzo9I	GATC	6 cut(s)	306, 420, 627, 643, 980, 1084
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	3 cut(s)	19, 543, 1258
Lsp1109I	GCAGC	1 cut(s)	832
LweI	GCATC	3 cut(s)	1228, 1264, 1402
MaeI	CTAG	3 cut(s)	810, 939, 1287
MaeII	ACGT	3 cut(s)	99, 328, 1008
MaeIII	GTNAC	2 cut(s)	425, 1333
MalI	GATC	6 cut(s)	308, 422, 629, 645, 982, 1086
MboI	GATC	6 cut(s)	306, 420, 627, 643, 980, 1084
MboII	GAAGA	7 cut(s)	457, 661, 742, 884, 1091, 1147, 1178
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	2 cut(s)	30, 540
MluCI	AATT	8 cut(s)	190, 240, 336, 363, 604, 658, 719, 1413
MlyI	GAGTC	1 cut(s)	1159
MmeI	TCCRAC	2 cut(s)	120, 1162
MseI	TTAA	9 cut(s)	194, 269, 561, 588, 735, 825, 840, 1302, 1450
MslI	CAYNNNNRTG	1 cut(s)	1435
MspR9I	CCNGG	1 cut(s)	1089
Mva1269I	GAATGC	1 cut(s)	1108
MvaI	CCWGG	1 cut(s)	1089
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	1283, 1399
NdeI	CATATG	1 cut(s)	1068
NdeII	GATC	6 cut(s)	306, 420, 627, 643, 980, 1084
NlaIII	CATG	4 cut(s)	186, 761, 905, 1440
NmuCI	GTSAC	1 cut(s)	425
PaeR7I	CTCGAG	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	1 cut(s)	1014
PctI	GAATGC	1 cut(s)	1108
PfeI	GAWTC	5 cut(s)	4, 437, 679, 944, 1037
PflFI	GACNNNGTC	1 cut(s)	992
PflMI	CCANNNNNTGG	1 cut(s)	607
PkrI	GCNGC	1 cut(s)	847
PleI	GAGTC	1 cut(s)	1158
PpsI	GAGTC	1 cut(s)	1158
Ppu21I	YACGTR	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	1087
PspFI	CCCAGC	1 cut(s)	1106
PspGI	CCWGG	1 cut(s)	1087
PspPI	GGNCC	1 cut(s)	1427
PstI	CTGCAG	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	643
PsyI	GACNNNGTC	1 cut(s)	992
RseI	CAYNNNNRTG	1 cut(s)	1435
SacI	GAGCTC	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	9 cut(s)	194, 269, 561, 588, 735, 825, 840, 1302, 1450
SatI	GCNGC	1 cut(s)	846
Sau3AI	GATC	6 cut(s)	306, 420, 627, 643, 980, 1084
Sau96I	GGNCC	1 cut(s)	1427
SchI	GAGTC	1 cut(s)	1159
ScrFI	CCNGG	1 cut(s)	1089
SduI	GDGCHC	2 cut(s)	30, 540
SfaNI	GCATC	3 cut(s)	1228, 1264, 1402
SfcI	CTRYAG	3 cut(s)	224, 498, 777
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	1435
SmlI	CTYRAG	4 cut(s)	29, 71, 167, 512
SmoI	CTYRAG	4 cut(s)	29, 71, 167, 512
Sse9I	AATT	8 cut(s)	190, 240, 336, 363, 604, 658, 719, 1413
SsiI	CCGC	2 cut(s)	46, 1057
SspMI	CTAG	3 cut(s)	810, 939, 1287
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	1087
StyI	CCWWGG	1 cut(s)	1203
TaaI	ACNGT	4 cut(s)	265, 381, 1251, 1370
TaiI	ACGT	3 cut(s)	102, 331, 1011
TaqI	TCGA	5 cut(s)	138, 168, 962, 1017, 1433
TasI	AATT	8 cut(s)	190, 240, 336, 363, 604, 658, 719, 1413
TfiI	GAWTC	5 cut(s)	4, 437, 679, 944, 1037
Tru1I	TTAA	9 cut(s)	194, 269, 561, 588, 735, 825, 840, 1302, 1450
Tru9I	TTAA	9 cut(s)	194, 269, 561, 588, 735, 825, 840, 1302, 1450
TscAI	CASTG	3 cut(s)	268, 488, 1395
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	845
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	6 cut(s)	17, 651, 834, 1041, 1092, 1425
TspGWI	ACGGA	5 cut(s)	196, 413, 530, 982, 1386
TspRI	CASTG	3 cut(s)	268, 488, 1395
Tth111I	GACNNNGTC	1 cut(s)	992
Van91I	CCANNNNNTGG	1 cut(s)	607
XapI	RAATTY	1 cut(s)	604
XhoI	CTCGAG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	833
XspI	CTAG	3 cut(s)	810, 939, 1287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.