Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Forward (+)

11084891 .. 11091103

Gene Structure 6213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G137100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGAACCGTCTGAGTTTGGAGCAGGTGCTCAAGGACAACAACACTCGCGACCCCAACTCCATTTCAAGTCTCAAGCTCAATCACAAGGCTCTTTCGGATGTGTCGTGCTTGAGCGAGTTCAAGAACTTGGAGAGGCTCGACCTCAGCTTCAACAATCTCACTTCTCTTGAGGGGTTAAAGTCATGTGTCAATTTAAAATGGCTGTCAGTTGCAAACAATAAACTGCAAAGCCTCAAAGGTATTGAAGGACTTTCTAAGCTCACTGTGTTAAATGCAGGCAAGAATAAGCTCAAGGTAATGGATGAGGTCATGTCTATTGTTAGCTTACGTGCAGTGATATTGAACGATAATGAGATTGCTTCAGTTTGCAGACTTGAACCTCTGAGAGACTTGAACACTCTTGTTCTTTCTAGAAATCCGATCCGTGACATTGGTGATTCTCTGATGAAGGTGAAATCTATCACAAAGCTTTCTCTCTCCCACTGCCAACTCCAAACTATACACTCTTCACTCAAGTCCTGTATTGAACTGAAAGAGCTCCGTCTTGCTCATAACGATATTAAGGGTCTCCCAGCCGAGTTGGCTCTTAATAAGAAACTCCAGAATCTGGACTTGGGGAATAATGTGATCACAAGATGGTCCGATCTGAAGGTACTCAATTCATTGGTCAATCTGAAAAATCTCAATCTGCAAGGGAACCCTATTGTTGAAAAAGATAAATTAGCAAAGAAGATTAAAAGAATATTGCCGAACCTGCACGTATTCAATGCAAGACCAATAGATAAATACACCAAGAATGAAAAGGGTGCTGGAGTTGATGAAGTTGATGATTCTTCACTTAATGCTGCTAACAAGCAAGAAAGTCAAACAGAAAAACGAAAAGATAGAGACTTCAAACATCTTATGATGGCTGGAACAAAGGGTGGTATTGGTAAGCTTGAAAACTCTAGTGATTCTGATACGAAGAAATTGAAACTGAAAAAGCAGAAACCAGATGACAATGTCTCAAACCACGAAGTTTTGGTCCAGGGGGATGAAAAAAGTGATCATGTCAAGAAAAAGAGCTACAAACATCAGGTGTTAAATGAAAATGATCCTAGTAATCTTCAAAAAGCTGGGGATTTGGAGAAGGAATCACAGAAAAAGAAGCAGAAAAAGAATCCACTCCATACCGAAGATAATACCAAGGTTGGGAAAAAACTAGAGAAAGCAAAGGTGAAACAAGAAGGTGAACTTGATGTTATTGATGATGCAGACACACCGTTTTTGGAGCTTTTTTCTTTTAACATGGGAGATGCTGAGGTTGGTGGTGAAAACAAAGTTAATGACAAGGTCAGTGAAGAGGTGAATTTGTTGGGTGGCTTAGTAACCTTCCCTTCTAAGAGGAAAAAAGCTAAAAACCGCGGCACTGGTTATACACTACAGCCATTGCCTTTGGATGAAATTGGAACAGGCGGACCATCAACATGGGGTGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

494

Amino Acids

54.89

Weight (kDa)

9.18

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	13
Acc36I	ACCTGC	2 cut(s)	13, 762
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccII	CGCG	2 cut(s)	48, 1404
AciI	CCGC	3 cut(s)	1402, 1404, 1455
AclWI	GGATC	2 cut(s)	415, 1088
AcsI	RAATTY	1 cut(s)	1348
AcuI	CTGAAG	2 cut(s)	345, 668
AfaI	GTAC	1 cut(s)	654
AfiI	CCNNNNNNNGG	2 cut(s)	607, 1191
AjnI	CCWGG	1 cut(s)	1026
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
Alw21I	GWGCWC	2 cut(s)	30, 540
Alw26I	GTCTC	5 cut(s)	74, 381, 572, 882, 1009
AlwI	GGATC	2 cut(s)	415, 1088
AlwNI	CAGNNNCTG	1 cut(s)	607
ApeKI	GCWGC	1 cut(s)	845
ApoI	RAATTY	1 cut(s)	1348
ArsI	GACNNNNNNTTYG	2 cut(s)	1008, 1040
AspS9I	GGNCC	3 cut(s)	639, 1024, 1457
AsuHPI	GGTGA	6 cut(s)	446, 463, 1228, 1241, 1322, 1357
AvaII	GGWCC	3 cut(s)	639, 1024, 1457
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	30, 540
BbvCI	CCTCAGC	2 cut(s)	143, 1299
BbvI	GCAGC	1 cut(s)	832
BccI	CCATC	3 cut(s)	630, 901, 1468
BciT130I	CCWGG	1 cut(s)	1028
BclI	TGATCA	2 cut(s)	627, 1045
BcoDI	GTCTC	5 cut(s)	74, 381, 572, 882, 1009
BfaI	CTAG	4 cut(s)	411, 948, 1098, 1202
BfmI	CTRYAG	1 cut(s)	1421
BfuAI	ACCTGC	2 cut(s)	13, 762
BglI	GCCNNNNNGGC	1 cut(s)	581
BisI	GCNGC	2 cut(s)	846, 1405
BlsI	GCNGC	2 cut(s)	847, 1406
Bme1390I	CCNGG	1 cut(s)	1028
Bme18I	GGWCC	3 cut(s)	639, 1024, 1457
BmgT120I	GGNCC	3 cut(s)	639, 1024, 1457
BmiI	GGNNCC	1 cut(s)	698
BmrFI	CCNGG	1 cut(s)	1028
BmsI	GCATC	2 cut(s)	1240, 1285
BpmI	CTGGAG	2 cut(s)	584, 831
Bpu10I	CCTNAGC	2 cut(s)	143, 1299
BpuEI	CTTGAG	6 cut(s)	14, 56, 130, 188, 275, 497
BsaAI	YACGTR	2 cut(s)	329, 760
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	1027, 1185, 1402
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 1191
Bse1I	ACTGG	1 cut(s)	1414
Bse3DI	GCAATG	1 cut(s)	1427
BseBI	CCWGG	1 cut(s)	1028
BseDI	CCNNGG	3 cut(s)	1027, 1185, 1402
BseGI	GGATG	4 cut(s)	103, 307, 1039, 1444
BseLI	CCNNNNNNNGG	2 cut(s)	607, 1191
BseMI	GCAATG	1 cut(s)	1427
BseMII	CTCAG	3 cut(s)	157, 374, 1290
BseNI	ACTGG	1 cut(s)	1414
BseXI	GCAGC	1 cut(s)	832
BseYI	CCCAGC	2 cut(s)	571, 1115
BsgI	GTGCAG	2 cut(s)	351, 740
Bsh1236I	CGCG	2 cut(s)	48, 1404
BsiHKAI	GWGCWC	2 cut(s)	30, 540
BslI	CCNNNNNNNGG	2 cut(s)	607, 1191
BsmAI	GTCTC	5 cut(s)	74, 381, 572, 882, 1009
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	30, 540
Bsp143I	GATC	5 cut(s)	420, 627, 643, 1045, 1093
Bsp68I	TCGCGA	1 cut(s)	48
BspACI	CCGC	3 cut(s)	1402, 1404, 1455
BspCNI	CTCAG	3 cut(s)	156, 375, 1291
BspFNI	CGCG	2 cut(s)	48, 1404
BspLI	GGNNCC	1 cut(s)	698
BspMI	ACCTGC	2 cut(s)	13, 762
BspPI	GGATC	2 cut(s)	415, 1088
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	1427
BsrI	ACTGG	1 cut(s)	1414
BssECI	CCNNGG	3 cut(s)	1027, 1185, 1402
BssMI	GATC	5 cut(s)	420, 627, 643, 1045, 1093
BssT1I	CCWWGG	1 cut(s)	1185
Bst2UI	CCWGG	1 cut(s)	1028
Bst4CI	ACNGT	3 cut(s)	8, 265, 1263
Bst6I	CTCTTC	2 cut(s)	511, 1335
BstBAI	YACGTR	2 cut(s)	329, 760
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	7 cut(s)	11, 143, 255, 383, 1299, 1363, 1380
BstDSI	CCRYGG	1 cut(s)	1402
BstF5I	GGATG	4 cut(s)	103, 307, 1039, 1444
BstFNI	CGCG	2 cut(s)	48, 1404
BstKTI	GATC	5 cut(s)	423, 630, 646, 1048, 1096
BstMAI	GTCTC	5 cut(s)	74, 381, 572, 882, 1009
BstMBI	GATC	5 cut(s)	420, 627, 643, 1045, 1093
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 754
BstNI	CCWGG	1 cut(s)	1028
BstSCI	CCNGG	1 cut(s)	1026
BstSFI	CTRYAG	1 cut(s)	1421
BstUI	CGCG	2 cut(s)	48, 1404
BstV1I	GCAGC	1 cut(s)	832
BstXI	CCANNNNNNTGG	1 cut(s)	1467
BtgI	CCRYGG	1 cut(s)	1402
BtsCI	GGATG	4 cut(s)	103, 307, 1039, 1444
BtsI	GCAGTG	2 cut(s)	339, 481
BtsIMutI	CAGTG	5 cut(s)	261, 339, 481, 1342, 1407
BtuMI	TCGCGA	1 cut(s)	48
BveI	ACCTGC	2 cut(s)	13, 762
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	607
Cfr13I	GGNCC	3 cut(s)	639, 1024, 1457
Cfr42I	CCGCGG	1 cut(s)	1405
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	5 cut(s)	183, 310, 1049, 1288, 1467
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	7 cut(s)	11, 143, 255, 383, 1299, 1363, 1380
DpnI	GATC	5 cut(s)	422, 629, 645, 1047, 1095
DpnII	GATC	5 cut(s)	420, 627, 643, 1045, 1093
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	511, 1335
EarI	CTCTTC	2 cut(s)	511, 1335
EciI	GGCGGA	1 cut(s)	1470
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	1185
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	3 cut(s)	639, 1024, 1457
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	345, 668
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	1026
EcoT14I	CCWWGG	1 cut(s)	1185
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	1185
FaeI	CATG	5 cut(s)	186, 313, 1052, 1291, 1470
FalI	AAGNNNNNCTT	2 cut(s)	1218, 1250
FatI	CATG	5 cut(s)	182, 309, 1048, 1287, 1466
FbaI	TGATCA	2 cut(s)	627, 1045
Fnu4HI	GCNGC	2 cut(s)	846, 1405
FokI	GGATG	4 cut(s)	110, 314, 1046, 1451
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	2 cut(s)	846, 1405
FspBI	CTAG	4 cut(s)	411, 948, 1098, 1202
GluI	GCNGC	2 cut(s)	846, 1405
GsaI	CCCAGC	2 cut(s)	575, 1119
GsuI	CTGGAG	2 cut(s)	584, 831
Hin1II	CATG	5 cut(s)	186, 313, 1052, 1291, 1470
HindIII	AAGCTT	2 cut(s)	467, 935
HinfI	GANTC	6 cut(s)	437, 604, 830, 953, 1133, 1159
HphI	GGTGA	6 cut(s)	446, 463, 1228, 1241, 1322, 1357
Hpy166II	GTNNAC	1 cut(s)	1232
Hpy188I	TCNGA	9 cut(s)	12, 97, 384, 420, 444, 643, 648, 675, 958
Hpy188III	TCNNGA	7 cut(s)	47, 121, 167, 411, 601, 608, 1054
Hpy8I	GTNNAC	1 cut(s)	1232
HpyAV	CCTTC	7 cut(s)	239, 442, 643, 1123, 1220, 1381, 1386
HpyCH4III	ACNGT	3 cut(s)	8, 265, 1263
HpyCH4IV	ACGT	2 cut(s)	328, 759
HpyCH4V	TGCA	9 cut(s)	212, 226, 275, 332, 369, 691, 757, 770, 1253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 754
HpyF3I	CTNAG	7 cut(s)	11, 143, 255, 383, 1299, 1363, 1380
HpySE526I	ACGT	2 cut(s)	328, 759
Hsp92II	CATG	5 cut(s)	186, 313, 1052, 1291, 1470
Ksp22I	TGATCA	2 cut(s)	627, 1045
KspI	CCGCGG	1 cut(s)	1405
Kzo9I	GATC	5 cut(s)	420, 627, 643, 1045, 1093
LmnI	GCTCC	3 cut(s)	19, 543, 1270
Lsp1109I	GCAGC	1 cut(s)	832
LweI	GCATC	2 cut(s)	1240, 1285
MaeI	CTAG	4 cut(s)	411, 948, 1098, 1202
MaeII	ACGT	2 cut(s)	328, 759
MaeIII	GTNAC	2 cut(s)	425, 1366
MalI	GATC	5 cut(s)	422, 629, 645, 1047, 1095
MboI	GATC	5 cut(s)	420, 627, 643, 1045, 1093
MboII	GAAGA	7 cut(s)	498, 742, 825, 976, 1097, 1187, 1352
MhlI	GDGCHC	2 cut(s)	30, 540
MluCI	AATT	6 cut(s)	190, 658, 719, 968, 1348, 1443
MnlI	CCTC	9 cut(s)	126, 152, 163, 242, 298, 390, 1294, 1336, 1377
MslI	CAYNNNNRTG	1 cut(s)	1465
MspA1I	CMGCKG	1 cut(s)	1404
MspR9I	CCNGG	1 cut(s)	1028
MvaI	CCWGG	1 cut(s)	1028
MvnI	CGCG	2 cut(s)	48, 1404
MwoI	GCNNNNNNNGC	2 cut(s)	581, 754
NdeII	GATC	5 cut(s)	420, 627, 643, 1045, 1093
NlaIII	CATG	5 cut(s)	186, 313, 1052, 1291, 1470
NlaIV	GGNNCC	1 cut(s)	698
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	425
NruI	TCGCGA	1 cut(s)	48
PaqCI	CACCTGC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	6 cut(s)	437, 604, 830, 953, 1133, 1159
PflFI	GACNNNGTC	2 cut(s)	1001, 1331
PflMI	CCANNNNNTGG	1 cut(s)	607
PkrI	GCNGC	2 cut(s)	847, 1406
Ppu21I	YACGTR	2 cut(s)	329, 760
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	1026
PspFI	CCCAGC	2 cut(s)	571, 1115
PspGI	CCWGG	1 cut(s)	1026
PspN4I	GGNNCC	1 cut(s)	698
PspPI	GGNCC	3 cut(s)	639, 1024, 1457
PstNI	CAGNNNCTG	1 cut(s)	607
PsyI	GACNNNGTC	2 cut(s)	1001, 1331
RruI	TCGCGA	1 cut(s)	48
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	1 cut(s)	1465
SacI	GAGCTC	1 cut(s)	540
SacII	CCGCGG	1 cut(s)	1405
SatI	GCNGC	2 cut(s)	846, 1405
Sau3AI	GATC	5 cut(s)	420, 627, 643, 1045, 1093
Sau96I	GGNCC	3 cut(s)	639, 1024, 1457
ScrFI	CCNGG	1 cut(s)	1028
SduI	GDGCHC	2 cut(s)	30, 540
SfaNI	GCATC	2 cut(s)	1240, 1285
SfcI	CTRYAG	1 cut(s)	1421
Sfr303I	CCGCGG	1 cut(s)	1405
SgrBI	CCGCGG	1 cut(s)	1405
SinI	GGWCC	3 cut(s)	639, 1024, 1457
SmiMI	CAYNNNNRTG	1 cut(s)	1465
SmlI	CTYRAG	6 cut(s)	29, 71, 109, 167, 290, 512
SmoI	CTYRAG	6 cut(s)	29, 71, 109, 167, 290, 512
Sse9I	AATT	6 cut(s)	190, 658, 719, 968, 1348, 1443
SsiI	CCGC	3 cut(s)	1402, 1404, 1455
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	4 cut(s)	411, 948, 1098, 1202
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	1026
StyI	CCWWGG	1 cut(s)	1185
TaaI	ACNGT	3 cut(s)	8, 265, 1263
TaiI	ACGT	2 cut(s)	331, 762
TaqI	TCGA	1 cut(s)	138
TasI	AATT	6 cut(s)	190, 658, 719, 968, 1348, 1443
TauI	GCSGC	1 cut(s)	1407
TfiI	GAWTC	6 cut(s)	437, 604, 830, 953, 1133, 1159
TscAI	CASTG	5 cut(s)	268, 339, 488, 1342, 1414
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	845
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	8 cut(s)	17, 461, 651, 813, 834, 1050, 1101, 1455
TspGWI	ACGGA	2 cut(s)	413, 530
TspRI	CASTG	5 cut(s)	268, 339, 488, 1342, 1414
Tth111I	GACNNNGTC	2 cut(s)	1001, 1331
Van91I	CCANNNNNTGG	1 cut(s)	607
VpaK11BI	GGWCC	3 cut(s)	639, 1024, 1457
XapI	RAATTY	1 cut(s)	1348
XbaI	TCTAGA	1 cut(s)	410
XspI	CTAG	4 cut(s)	411, 948, 1098, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.