Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Forward (+)

18119953 .. 18124053

Gene Structure 4101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1168900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGGAGCAGAGCTCCAAATATTTTTGTTTCATGCTTGGGCGAGTTCAAGAGCTTGGAGAGTTTCGACCTCAGCTTCAACAAAACCTCACTTCTCTCAAGGGGTTGAAGTCATGTGTCAATTGGAAATGGCTATCTGTCGCGAATAATAAGCTGCAGAACCTCAACGGAATAGTGTTAAATGCTGGCAACAATAAGCTTAAGGCGATGGATGAGGTCAAAGTCTATTGTGAGCTTACGTGCAATAATGAGATTGCTTCAATTTGCAGACTTGAACTGTTAAGAGAACTGAACACTCTTGTTCTTTCTAGAAATCCGATCCATGACATTGGTGATTCTCTGAAGAAGATGAAATCTATCACAAAGCTTACTTTCTGTCACTGCCAACTTCAGACTATAGAGGCTTCGCTCAAGTTCTGTATTGAACTGAAAGGGCTCCGTCTTGCTCATAATGATATTAAGAGTCTCTCAGCCGAGTTGGCTCTTAATAAGAAGCTCCAGAATTTGGACATGGGTAATAATGTAATCAATTCATTGGTCAATCTGTGGAATCTCAATCTGCAAGGAAACACTGTTGTTGAAAAGGATAAATTAGTAAAGAAGATTAAAAAGATGTTGCTGAACCTCCACGTATTCAATGCAAGGCCCATAGATAAATACATCAAGAATGGAAAGGGCGCTGGAATTGATGAAGATGATTCTTCACTTAATACTGCTAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

242

Amino Acids

27.23

Weight (kDa)

9.34

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccII	CGCG	1 cut(s)	143
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	2 cut(s)	362, 374
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	8 cut(s)	50, 80, 109, 261, 275, 425, 581, 637
AluBI	AGCT	8 cut(s)	15, 55, 76, 154, 199, 235, 367, 496
AluI	AGCT	8 cut(s)	15, 55, 76, 154, 199, 235, 367, 496
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	1 cut(s)	313
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	344
AsuNHI	GCTAGC	1 cut(s)	716
BanII	GRGCYC	2 cut(s)	17, 438
Bbv12I	GWGCWC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	2 cut(s)	309, 717
BfmI	CTRYAG	2 cut(s)	155, 396
BfoI	RGCGCY	1 cut(s)	681
BfrI	CTTAAG	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	1 cut(s)	437
BmtI	GCTAGC	1 cut(s)	720
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	83, 395
BsaAI	YACGTR	2 cut(s)	240, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	86, 483
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	646
BsiHKAI	GWGCWC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	17, 438
Bsp143I	GATC	1 cut(s)	318
Bsp68I	TCGCGA	1 cut(s)	143
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	2 cut(s)	85, 482
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	437
BspMAI	CTGCAG	1 cut(s)	159
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	1 cut(s)	313
BspTI	CTTAAG	1 cut(s)	200
BssMI	GATC	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	279, 574
BstAFI	CTTAAG	1 cut(s)	200
BstBAI	YACGTR	2 cut(s)	240, 631
BstC8I	GCNNGC	2 cut(s)	187, 718
BstDEI	CTNAG	2 cut(s)	72, 469
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	155, 396
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	646
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	379, 570
BtuMI	TCGCGA	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	187, 718
CfoI	GCGC	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	645
CviAII	CATG	4 cut(s)	34, 114, 323, 511
DdeI	CTNAG	2 cut(s)	72, 469
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	2 cut(s)	17, 438
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	362, 374
EcoICRI	GAGCTC	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	17, 438
FaeI	CATG	4 cut(s)	37, 117, 326, 514
FaiI	YATR	7 cut(s)	35, 115, 324, 398, 450, 512, 650
FatI	CATG	4 cut(s)	33, 113, 322, 510
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	2 cut(s)	17, 438
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	2 cut(s)	309, 717
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	646
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	4 cut(s)	37, 117, 326, 514
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HindIII	AAGCTT	2 cut(s)	197, 365
HinfI	GANTC	4 cut(s)	335, 463, 550, 698
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	318, 342, 393
Hpy188III	TCNNGA	5 cut(s)	50, 142, 309, 499, 664
HpyCH4III	ACNGT	2 cut(s)	279, 574
HpyCH4IV	ACGT	2 cut(s)	239, 630
HpyCH4V	TGCA	5 cut(s)	157, 243, 267, 562, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	2 cut(s)	72, 469
HpySE526I	ACGT	2 cut(s)	239, 630
Hsp92II	CATG	4 cut(s)	37, 117, 326, 514
HspAI	GCGC	1 cut(s)	678
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	4 cut(s)	7, 20, 441, 501
LpnPI	CCDG	3 cut(s)	171, 512, 666
Lsp1109I	GCAGC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	309, 717
MaeII	ACGT	2 cut(s)	239, 630
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	5 cut(s)	355, 358, 613, 693, 704
MfeI	CAATTG	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	17, 438
MluCI	AATT	6 cut(s)	121, 261, 502, 529, 590, 684
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	6 cut(s)	81, 98, 173, 208, 394, 635
MseI	TTAA	7 cut(s)	179, 201, 281, 459, 486, 606, 708
MspCI	CTTAAG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	716
NlaIII	CATG	4 cut(s)	37, 117, 326, 514
NlaIV	GGNNCC	1 cut(s)	437
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	377
NruI	TCGCGA	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	335, 550, 698
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
Ppu21I	YACGTR	2 cut(s)	240, 631
Psp124BI	GAGCTC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	645
PstI	CTGCAG	1 cut(s)	159
RruI	TCGCGA	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	7 cut(s)	179, 201, 281, 459, 486, 606, 708
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	645
SchI	GAGTC	1 cut(s)	472
SduI	GDGCHC	2 cut(s)	17, 438
SfcI	CTRYAG	2 cut(s)	155, 396
SmlI	CTYRAG	3 cut(s)	98, 200, 410
SmoI	CTYRAG	3 cut(s)	98, 200, 410
Sse9I	AATT	6 cut(s)	121, 261, 502, 529, 590, 684
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	2 cut(s)	309, 717
SstI	GAGCTC	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	279, 574
TaiI	ACGT	2 cut(s)	242, 633
TaqI	TCGA	1 cut(s)	67
TasI	AATT	6 cut(s)	121, 261, 502, 529, 590, 684
TfiI	GAWTC	3 cut(s)	335, 550, 698
Tru1I	TTAA	7 cut(s)	179, 201, 281, 459, 486, 606, 708
Tru9I	TTAA	7 cut(s)	179, 201, 281, 459, 486, 606, 708
TscAI	CASTG	2 cut(s)	386, 577
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	5 cut(s)	17, 22, 365, 522, 705
TspGWI	ACGGA	2 cut(s)	183, 428
TspRI	CASTG	2 cut(s)	386, 577
Van91I	CCANNNNNTGG	1 cut(s)	505
Vha464I	CTTAAG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	502
XbaI	TCTAGA	1 cut(s)	308
XspI	CTAG	2 cut(s)	309, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.