Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004769

Physical Location & Seq

Genomic Coordinates Forward (+)

14013499 .. 14014009

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTGAAACCAATGTTGATATCGAAAATGCTAGTCATTCTGATACAAAGAAATCGAAATGGAAAAGGCAGGGATCAAAAGACAATGCCTCAAACAATGTTGTTGTCGAGGGGGATGAAAAACGAGATCCTGTCAAGAAAAAGAACCGCAAACATCAAATCATCGCAACAGAAGACAATACCAAGGTTGGAAAGAAATCAGAGAAATTCCAGATGAGAAAAGGTGACCTTGATGTTATCGATGATACAGATACACCATTTTTGGAGCTTTTTTCTGTTGATGCTGAGGTTGCTGGTGAAGAAAAGGCTAAGGACAAGGTAATAGAATTGGGTGGCTTAGTAACCTTCCCTTGTAAGAGTAAAAAAGCAAAAAACTTGGCCTCCACCGATTCTACTCTACAGCCGTCGCATGTTGATGAAATTGGAACAGGCGGGCCATCAACATGGGGTGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

153

Amino Acids

16.69

Weight (kDa)

5.7

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22320 AT5G22320
fragaria_vesca	FvH4_3g25730 FvH4_3g25730 FvH4_3g25730 FvH4_3g25730
malus_domestica	MD03G1150100.v1.1 MD11G1168900.v1.1 MD11G1169000.v1.1
prunus_persica	Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1 Prupe.6G137100_v2.0.a1
pyrus_communis	pycom03g10420 pycom11g14210
rosa_chinensis	RchiOBHm_Chr5g0023971 RchiOBHm_Chr5g0046091
rosa_laevigata	RLG00000034140 RLG00000034385
rosa_multiflora	Rmu_co8377827.1_g000001 Rmu_sc0001035.1_g000048 Rmu_sc0001035.1_g000052
rosa_roxburghii	Rroxscaffold_1G00035350 Rroxscaffold_4G00313920 Rroxscaffold_6G00393790
rosa_rugosa	Rorug05G0225900 Rorug05G0226000
rosa_samantha	Rh5BG315000 Rh5CG341300 Rh5DG325200
rosa_wichuraiana	Rw5G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	148, 432
AclWI	GGATC	2 cut(s)	82, 122
AcsI	RAATTY	1 cut(s)	206
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
AlwI	GGATC	2 cut(s)	82, 122
AoxI	GGCC	2 cut(s)	378, 434
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	17, 236, 308
BbsI	GAAGAC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	285
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	434
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	2 cut(s)	285, 309
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	380, 436
BshVI	ATCGAT	1 cut(s)	240
BsnI	GGCC	2 cut(s)	380, 436
Bsp143I	GATC	2 cut(s)	74, 127
BspACI	CCGC	2 cut(s)	148, 432
BspANI	GGCC	2 cut(s)	380, 436
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	240
BspPI	GGATC	2 cut(s)	82, 122
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	74, 127
BssT1I	CCWWGG	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	3 cut(s)	285, 309, 337
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	77, 130
BstMBI	GATC	2 cut(s)	74, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	413
BstPI	GGTNACC	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	380, 436
BsuTUI	ATCGAT	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	240
CviAII	CATG	2 cut(s)	410, 444
CviJI	RGCY	6 cut(s)	268, 308, 336, 380, 403, 436
CviKI_1	RGCY	6 cut(s)	268, 308, 336, 380, 403, 436
DdeI	CTNAG	3 cut(s)	285, 309, 337
DpnI	GATC	2 cut(s)	76, 129
DpnII	GATC	2 cut(s)	74, 127
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	22
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	413, 447
FaiI	YATR	2 cut(s)	411, 445
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	2 cut(s)	409, 443
FauI	CCCGC	1 cut(s)	425
FokI	GGATG	1 cut(s)	128
FspBI	CTAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	380, 436
Hin1II	CATG	2 cut(s)	413, 447
HinfI	GANTC	1 cut(s)	389
HphI	GGTGA	3 cut(s)	17, 236, 308
Hpy188I	TCNGA	2 cut(s)	43, 202
Hpy188III	TCNNGA	2 cut(s)	136, 211
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	285, 309, 337
Hsp92II	CATG	2 cut(s)	413, 447
Kzo9I	GATC	2 cut(s)	74, 127
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	5 cut(s)	56, 144, 224, 279, 414
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	224, 340
MalI	GATC	2 cut(s)	76, 129
MboI	GATC	2 cut(s)	74, 127
MboII	GAAGA	2 cut(s)	185, 311
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	3 cut(s)	206, 326, 420
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	100, 103, 280, 391
MslI	CAYNNNNRTG	2 cut(s)	414, 442
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	2 cut(s)	74, 127
NlaIII	CATG	2 cut(s)	413, 447
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	127
RseI	CAYNNNNRTG	2 cut(s)	414, 442
Sau3AI	GATC	2 cut(s)	74, 127
Sau96I	GGNCC	1 cut(s)	434
SetI	ASST	7 cut(s)	189, 226, 231, 270, 291, 321, 347
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	2 cut(s)	414, 442
Sse9I	AATT	3 cut(s)	206, 326, 420
SsiI	CCGC	2 cut(s)	148, 432
SspMI	CTAG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	183
TaqI	TCGA	4 cut(s)	24, 56, 108, 240
TasI	AATT	3 cut(s)	206, 326, 420
TfiI	GAWTC	1 cut(s)	389
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	132, 432
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	413
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.