FvH4_3g25730

Protein phosphatase 1 regulatory subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
18596182 .. 18603554
7373 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25730.t1

Sequence Viewer

Length: 1410 bp
ATGAATCGGTTGAGCTTGGATCAGGTGCTCAAGGACAACAACACTCGCGACCCCAACTCCATTTCTTCTCTCGTCCTCACTCACCGTGCTCTCTCCGATGTCTCGTGCTTGGGCGAGCTCAAGAACTTGGAGAGGCTCGATCTCAGCTCCAACACCCTCACTTCGCTCGAGGGGTTGAAGTCATGCGTCAATTTGAAGTGGCTATGCGTTTCGCAGAACAAGCTGCAAAGCCTCAAGGGAATTGAAGGACTTTCTAAGCTCACTGTGTTAAATGCAGGCAAGAATAAGCTCACAGTGATGGATGAGGTCAAGTCAATTGTGAGTTTGCGCGCATTAATTTTAAATGACAATGAGATTGCTTCAATTTGCAGACTTGAACAGATGAAAGAGTTGAACACTCTTGTTCTTTCTAAAAACCCGATTCGTGATATTGGTGATTCTCTGATGAATGTCAAATCTATAACAAAGCTTTCTCTTTCTCACTGCCAACTTCAGAGTTTAGAGTCTTCGCTCAAGTCATGTGTTGAACTGAAAGAGCTCCGGCTCGCTCACAATGCTATTGAGGGTCTCCCTGCTGAGTTGGCTCAGAATAAGAGACTCCAGAATCTGGATCTGGGGAATAATGTGATTACCAGATGGTCTGAACTGAAGGTGCTTGATGCTTTGGTCAATCTGAAGAATCTCAATCTCCAAGGGAACCCTGTTGCTGAAAAGGATAAATTAGCAAAGAAGATCAAAAAGATGCTGCCAAACCTGCATGTTTTCAATGCAAGACCAATAGATAAATACACCAGGAATGAGAAGGGTGCCCGGGTTGATGCAGTTGATGAAGAAGAGCAAAAACATAGAGACTCAAAACATCAAGGGTTCGGTGAAACTAAGGATAGTAACCTTGATAATGCTAGAGAATTGGATATGAAGAGGAAACGAAATAGGGAGAAAGCAAATGAGAATGCCTCGGACCAGGAAGCTTTGGTCCAAGGGAATGAAGAACGGGATAGCATAAAGAAAAAGAAAAGGGATCAGGCTGTAAATGAGGATTTGAGCAATCTTAAAGAAGCTGCTGATTTGGAGGAATCAAAGGGAAAGAAGCTGAAAAAGAAAGGCCATAAAGACGATGATACCAAGGTTAAAAAGATACTACATAAGAAAAAGCAACAAAGTGAACTTGATATTATTGATGATGCAGACACTTCATTTTTGGAGCTCCTTTCGGATGACAAAGTAGTAGATGCTGAGGATGATGGCAGACAGAGAAAACTTAAGGATAAGGCTAGTCAAGACACAAAATTGTCAAGTGGCATAGTAACCATCACTTCAAGTAAAGCTAAGAAGCGGAGCACAGCTTCTACTTTACCACTATTGCCTGTGGATGAAATTGGAGTTGGCGGTCCATCAACATGGGACTGA

Protein Analysis

470

Amino Acids

52.41

Weight (kDa)

8.89

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 176 - 234 9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 762
AccB1I GGYRCC 1 cut(s) 806
AccB7I CCANNNNNTGG 1 cut(s) 607
AccII CGCG 2 cut(s) 48, 330
AciI CCGC 2 cut(s) 1336, 1389
AclWI GGATC 3 cut(s) 27, 618, 1029
AcuI CTGAAG 3 cut(s) 476, 668, 695
AfiI CCNNNNNNNGG 1 cut(s) 607
AflII CTTAAG 1 cut(s) 1262
AgsI TTSAA 9 cut(s) 178, 196, 245, 363, 377, 394, 527, 766, 1320
AjnI CCWGG 2 cut(s) 791, 963
AjuI GAANNNNNNNTTGG 2 cut(s) 1368, 1400
Alw21I GWGCWC 6 cut(s) 30, 91, 120, 540, 1209, 1343
Alw26I GTCTC 4 cut(s) 106, 572, 589, 843
AlwI GGATC 3 cut(s) 27, 618, 1029
AlwNI CAGNNNCTG 1 cut(s) 607
Ama87I CYCGRG 2 cut(s) 167, 810
AoxI GGCC 1 cut(s) 1105
ApeKI GCWGC 3 cut(s) 223, 745, 1061
AseI ATTAAT 1 cut(s) 335
AspLEI GCGC 2 cut(s) 330, 332
AspS9I GGNCC 3 cut(s) 961, 976, 1391
AsuC2I CCSGG 2 cut(s) 811, 812
AsuHPI GGTGA 3 cut(s) 74, 446, 884
AvaI CYCGRG 2 cut(s) 167, 810
AvaII GGWCC 3 cut(s) 961, 976, 1391
BaeGI GKGCMC 1 cut(s) 811
BaeI ACNNNNGTAYC 2 cut(s) 1113, 1146
BanI GGYRCC 1 cut(s) 806
BanII GRGCYC 3 cut(s) 120, 540, 1209
BauI CACGAG 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 6 cut(s) 30, 91, 120, 540, 1209, 1343
BbvCI CCTCAGC 1 cut(s) 1236
BbvI GCAGC 3 cut(s) 210, 732, 1048
BccI CCATC 5 cut(s) 292, 630, 1238, 1319, 1402
BciT130I CCWGG 2 cut(s) 793, 965
BcnI CCSGG 2 cut(s) 811, 812
BcoDI GTCTC 4 cut(s) 106, 572, 589, 843
BfaI CTAG 2 cut(s) 903, 1275
BfrI CTTAAG 1 cut(s) 1262
BfuAI ACCTGC 1 cut(s) 762
BisI GCNGC 3 cut(s) 224, 746, 1062
BlsI GCNGC 3 cut(s) 225, 747, 1063
Bme1390I CCNGG 4 cut(s) 793, 811, 812, 965
Bme18I GGWCC 3 cut(s) 961, 976, 1391
BmeT110I CYCGRG 2 cut(s) 167, 810
BmgT120I GGNCC 3 cut(s) 961, 976, 1391
BmiI GGNNCC 2 cut(s) 698, 808
BmrFI CCNGG 4 cut(s) 793, 811, 812, 965
BmsI GCATC 5 cut(s) 649, 732, 808, 1174, 1222
BpiI GAAGAC 1 cut(s) 498
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpmI CTGGAG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 1236
BpuEI CTTGAG 4 cut(s) 14, 104, 218, 497
BpuMI CCSGG 2 cut(s) 811, 812
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 5 cut(s) 691, 810, 957, 979, 1125
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 607
BseBI CCWGG 2 cut(s) 793, 965
BseDI CCNNGG 5 cut(s) 691, 810, 957, 979, 1125
BseGI GGATG 4 cut(s) 307, 1222, 1246, 1378
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMII CTCAG 4 cut(s) 157, 567, 599, 1227
BsePI GCGCGC 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 3 cut(s) 210, 732, 1048
Bsh1236I CGCG 2 cut(s) 48, 330
BshFI GGCC 1 cut(s) 1107
BshNI GGYRCC 1 cut(s) 806
BsiHKAI GWGCWC 6 cut(s) 30, 91, 120, 540, 1209, 1343
BsiHKCI CYCGRG 2 cut(s) 167, 810
BsiSI CCGG 2 cut(s) 541, 811
BslI CCNNNNNNNGG 1 cut(s) 607
BsmAI GTCTC 4 cut(s) 106, 572, 589, 843
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 1 cut(s) 1107
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 2 cut(s) 167, 810
Bsp1286I GDGCHC 7 cut(s) 30, 91, 120, 540, 811, 1209, 1343
Bsp143I GATC 5 cut(s) 19, 139, 610, 732, 1021
Bsp68I TCGCGA 1 cut(s) 48
BspACI CCGC 2 cut(s) 1336, 1389
BspANI GGCC 1 cut(s) 1107
BspCNI CTCAG 4 cut(s) 156, 568, 598, 1228
BspFNI CGCG 2 cut(s) 48, 330
BspLI GGNNCC 2 cut(s) 698, 808
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 3 cut(s) 27, 618, 1029
BspQI GCTCTTC 1 cut(s) 828
BspT107I GGYRCC 1 cut(s) 806
BspTI CTTAAG 1 cut(s) 1262
BspTNI GGTCTC 1 cut(s) 572
BssECI CCNNGG 5 cut(s) 691, 810, 957, 979, 1125
BssHII GCGCGC 1 cut(s) 328
BssMI GATC 5 cut(s) 19, 139, 610, 732, 1021
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 3 cut(s) 691, 979, 1125
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 793, 965
Bst4CI ACNGT 3 cut(s) 86, 265, 295
Bst6I CTCTTC 2 cut(s) 828, 914
BstAFI CTTAAG 1 cut(s) 1262
BstC8I GCNNGC 4 cut(s) 116, 277, 330, 546
BstDEI CTNAG 7 cut(s) 143, 255, 576, 585, 879, 1236, 1329
BstF5I GGATG 4 cut(s) 307, 1222, 1246, 1378
BstFNI CGCG 2 cut(s) 48, 330
BstHHI GCGC 2 cut(s) 330, 332
BstKTI GATC 5 cut(s) 22, 142, 613, 735, 1024
BstMAI GTCTC 4 cut(s) 106, 572, 589, 843
BstMBI GATC 5 cut(s) 19, 139, 610, 732, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 220, 554, 581, 754
BstNI CCWGG 2 cut(s) 793, 965
BstNSI RCATGY 1 cut(s) 761
BstSCI CCNGG 4 cut(s) 791, 809, 810, 963
BstSLI GKGCMC 1 cut(s) 811
BstUI CGCG 2 cut(s) 48, 330
BstV1I GCAGC 3 cut(s) 210, 732, 1048
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 610
BstXI CCANNNNNNTGG 1 cut(s) 1401
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 1 cut(s) 1107
BtsCI GGATG 4 cut(s) 307, 1222, 1246, 1378
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 3 cut(s) 261, 300, 481
BtuMI TCGCGA 1 cut(s) 48
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 4 cut(s) 116, 277, 330, 546
CaiI CAGNNNCTG 1 cut(s) 607
CfoI GCGC 2 cut(s) 330, 332
Cfr13I GGNCC 3 cut(s) 961, 976, 1391
Cfr9I CCCGGG 1 cut(s) 810
CseI GACGC 1 cut(s) 175
CviAII CATG 4 cut(s) 183, 519, 758, 1401
DdeI CTNAG 7 cut(s) 143, 255, 576, 585, 879, 1236, 1329
DpnI GATC 5 cut(s) 21, 141, 612, 734, 1023
DpnII GATC 5 cut(s) 19, 139, 610, 732, 1021
DraI TTTAAA 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 828, 914
EarI CTCTTC 2 cut(s) 828, 914
Ecl136II GAGCTC 3 cut(s) 118, 538, 1207
Eco130I CCWWGG 3 cut(s) 691, 979, 1125
Eco24I GRGCYC 3 cut(s) 120, 540, 1209
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 3 cut(s) 961, 976, 1391
Eco53kI GAGCTC 3 cut(s) 118, 538, 1207
Eco57I CTGAAG 3 cut(s) 476, 668, 695
Eco88I CYCGRG 2 cut(s) 167, 810
EcoICRI GAGCTC 3 cut(s) 118, 538, 1207
EcoRII CCWGG 2 cut(s) 791, 963
EcoT14I CCWWGG 3 cut(s) 691, 979, 1125
EcoT38I GRGCYC 3 cut(s) 120, 540, 1209
ErhI CCWWGG 3 cut(s) 691, 979, 1125
FaeI CATG 4 cut(s) 186, 522, 761, 1404
FatI CATG 4 cut(s) 182, 518, 757, 1400
Fnu4HI GCNGC 3 cut(s) 224, 746, 1062
FokI GGATG 4 cut(s) 314, 1229, 1253, 1385
FriOI GRGCYC 3 cut(s) 120, 540, 1209
Fsp4HI GCNGC 3 cut(s) 224, 746, 1062
FspBI CTAG 2 cut(s) 903, 1275
GlaI GCGC 2 cut(s) 329, 331
GluI GCNGC 3 cut(s) 224, 746, 1062
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 1 cut(s) 1107
HapII CCGG 2 cut(s) 541, 811
HgaI GACGC 1 cut(s) 175
HhaI GCGC 2 cut(s) 330, 332
Hin1II CATG 4 cut(s) 186, 522, 761, 1404
Hin6I GCGC 2 cut(s) 328, 330
HinP1I GCGC 2 cut(s) 328, 330
HindIII AAGCTT 2 cut(s) 467, 969
HinfI GANTC 9 cut(s) 4, 421, 437, 503, 597, 604, 679, 851, 1076
HpaII CCGG 2 cut(s) 541, 811
HphI GGTGA 3 cut(s) 74, 446, 884
Hpy166II GTNNAC 1 cut(s) 1166
Hpy188I TCNGA 8 cut(s) 97, 444, 495, 588, 643, 675, 961, 1216
Hpy188III TCNNGA 6 cut(s) 47, 121, 425, 601, 608, 1280
Hpy8I GTNNAC 1 cut(s) 1166
HpyAV CCTTC 3 cut(s) 239, 643, 796
HpyCH4III ACNGT 3 cut(s) 86, 265, 295
HpyCH4V TGCA 7 cut(s) 226, 275, 369, 757, 770, 821, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 554, 581, 754
HpyF3I CTNAG 7 cut(s) 143, 255, 576, 585, 879, 1236, 1329
Hsp92II CATG 4 cut(s) 186, 522, 761, 1404
HspAI GCGC 2 cut(s) 328, 330
Kzo9I GATC 5 cut(s) 19, 139, 610, 732, 1021
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 5 cut(s) 152, 543, 1204, 1212, 1338
Lsp1109I GCAGC 3 cut(s) 210, 732, 1048
LweI GCATC 5 cut(s) 649, 732, 808, 1174, 1222
MaeI CTAG 2 cut(s) 903, 1275
MaeIII GTNAC 2 cut(s) 887, 1306
MalI GATC 5 cut(s) 21, 141, 612, 734, 1023
MboI GATC 5 cut(s) 19, 139, 610, 732, 1021
MboII GAAGA 8 cut(s) 57, 498, 688, 742, 842, 845, 931, 1001
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 7 cut(s) 30, 91, 120, 540, 811, 1209, 1343
MluCI AATT 9 cut(s) 190, 240, 315, 336, 363, 719, 908, 1289, 1377
MlyI GAGTC 3 cut(s) 512, 591, 845
MmeI TCCRAC 1 cut(s) 174
MseI TTAA 6 cut(s) 269, 335, 341, 1053, 1131, 1263
MslI CAYNNNNRTG 2 cut(s) 296, 1399
MspCI CTTAAG 1 cut(s) 1262
MspI CCGG 2 cut(s) 541, 811
MspR9I CCNGG 4 cut(s) 793, 811, 812, 965
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 958
MvaI CCWGG 2 cut(s) 793, 965
MvnI CGCG 2 cut(s) 48, 330
MwoI GCNNNNNNNGC 4 cut(s) 220, 554, 581, 754
NciI CCSGG 2 cut(s) 811, 812
NdeII GATC 5 cut(s) 19, 139, 610, 732, 1021
NlaIII CATG 4 cut(s) 186, 522, 761, 1404
NlaIV GGNNCC 2 cut(s) 698, 808
NruI TCGCGA 1 cut(s) 48
NspI RCATGY 1 cut(s) 761
PaeR7I CTCGAG 1 cut(s) 167
PauI GCGCGC 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 828
PctI GAATGC 1 cut(s) 958
PfeI GAWTC 6 cut(s) 4, 421, 437, 604, 679, 1076
PflMI CCANNNNNTGG 1 cut(s) 607
PkrI GCNGC 3 cut(s) 225, 747, 1063
PleI GAGTC 3 cut(s) 511, 591, 845
PpsI GAGTC 3 cut(s) 511, 591, 845
PshBI ATTAAT 1 cut(s) 335
Psp124BI GAGCTC 3 cut(s) 120, 540, 1209
Psp6I CCWGG 2 cut(s) 791, 963
PspGI CCWGG 2 cut(s) 791, 963
PspN4I GGNNCC 2 cut(s) 698, 808
PspPI GGNCC 3 cut(s) 961, 976, 1391
PspXI VCTCGAGB 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 607
PsuI RGATCY 1 cut(s) 610
PteI GCGCGC 1 cut(s) 328
RruI TCGCGA 1 cut(s) 48
RseI CAYNNNNRTG 2 cut(s) 296, 1399
SacI GAGCTC 3 cut(s) 120, 540, 1209
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 6 cut(s) 269, 335, 341, 1053, 1131, 1263
SatI GCNGC 3 cut(s) 224, 746, 1062
Sau3AI GATC 5 cut(s) 19, 139, 610, 732, 1021
Sau96I GGNCC 3 cut(s) 961, 976, 1391
SchI GAGTC 3 cut(s) 512, 591, 845
ScrFI CCNGG 4 cut(s) 793, 811, 812, 965
SduI GDGCHC 7 cut(s) 30, 91, 120, 540, 811, 1209, 1343
SfaNI GCATC 5 cut(s) 649, 732, 808, 1174, 1222
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 3 cut(s) 961, 976, 1391
SlaI CTCGAG 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 812
SmiMI CAYNNNNRTG 2 cut(s) 296, 1399
SmlI CTYRAG 6 cut(s) 29, 119, 167, 233, 512, 1262
SmoI CTYRAG 6 cut(s) 29, 119, 167, 233, 512, 1262
Sse9I AATT 9 cut(s) 190, 240, 315, 336, 363, 719, 908, 1289, 1377
SsiI CCGC 2 cut(s) 1336, 1389
SspMI CTAG 2 cut(s) 903, 1275
SstI GAGCTC 3 cut(s) 120, 540, 1209
StyD4I CCNGG 4 cut(s) 791, 809, 810, 963
StyI CCWWGG 3 cut(s) 691, 979, 1125
TaaI ACNGT 3 cut(s) 86, 265, 295
TaqI TCGA 2 cut(s) 138, 168
TasI AATT 9 cut(s) 190, 240, 315, 336, 363, 719, 908, 1289, 1377
TfiI GAWTC 6 cut(s) 4, 421, 437, 604, 679, 1076
Tru1I TTAA 6 cut(s) 269, 335, 341, 1053, 1131, 1263
Tru9I TTAA 6 cut(s) 269, 335, 341, 1053, 1131, 1263
TscAI CASTG 3 cut(s) 268, 300, 488
TseI GCWGC 3 cut(s) 223, 745, 1061
TspDTI ATGAA 8 cut(s) 17, 398, 461, 843, 932, 1002, 1185, 1389
TspMI CCCGGG 1 cut(s) 810
TspRI CASTG 3 cut(s) 268, 300, 488
Van91I CCANNNNNTGG 1 cut(s) 607
Vha464I CTTAAG 1 cut(s) 1262
VpaK11BI GGWCC 3 cut(s) 961, 976, 1391
VspI ATTAAT 1 cut(s) 335
XceI RCATGY 1 cut(s) 761
XhoI CTCGAG 1 cut(s) 167
XmaI CCCGGG 1 cut(s) 810
XspI CTAG 2 cut(s) 903, 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.