AT5G37380

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001305
Physical Location & Seq
Reverse (-)
14816734 .. 14819346
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37380.5

Sequence Viewer

Length: 1296 bp
ATGGAGTGCAACAAAGACGAGGCGACGAGGGCGAAAGAAATTGCAGAGAACAAGTTCAAAATGAAAGACATTGCCGGGGCTAAGAAATTTGCCTTGAAAGCTCAAAATCTGTATCCAGAGATAGAAGGTGTTTCTCAGATGTTAGCAACCTTGGATGTGTATATCGCTGCAGAAAACAAAGTAAACGAGGATGTCGACTGGTATGGAATACTCAATGCAAGTCCTCGGGATGATGATGAAACGTTGAAGAGAAAGTACAGGAAGCTTGCTCTAATGCTTCACCCCGATAAAAACAAGTCTATAGGAGCTGAAGGGGCATTCAAACATGTTTCTGAAGCTTGGAAATTCTTGTCAGATAAGGAAAAGAGAGCAGCTTATGATCGTAGGAAAAGTTTGCACTCAGTTTATCAGAAGGTCTCAGTTTCATCTTCTAATAACGGGTTCTGCAATTTCGCCAAGACTACTTTCACTACAAATGCAAGGACGACGACCCCGAGAAACAATCCGCCGGCCCAGAAGACCAATCCGCCAGCCCAGAAGACCAATCCGCCTGCCCAGAAGACCAATCCGCCAGCCCAGAAGAACAATCCTCCGACCCAAAAGAACAATCCGCAAAAGCCAGTTGGTACTACACAGAAAACAGGACGTACTGATAATCACACAACAACACCAAACTCATTTACTGCATCTGGGTCATCAGACCAATCAAAGTCGAATACTTTCTGGACAGTCTGCAGGAGATGCATGATGCAGTACGAGTATCTAAGAGTTTATGTCAACTGTAACCTTCGGTGTCCTAATTGTCTACAGTCCTATTTGGCAGTAGAAGTCCCTAAACCAGGTATTTCAAGCCGTTGGAGTAGTTGCAGCCGTCTAAAGTCAGCTGCAAACCACAATACTACTTCAGGTTTATTTAATAACTCCAAGTGGACATTCTCAAGAACCAGCAGTGCAGCTCATGCTGCAAGTGTGGTTCAACATGCTTATGAGAAGGTAAAGAAAGATCGCGAGCAGGCGAAAGCAACCGCGAGAAGAGAAAAGAAGAATGCCAAAAGAAAGAGCACAACTGATTCGTCTGCTTCTGGTAGTTCGCTTAAAAAGAGGAAAGTTTGTTTAGAAACTGATATCGGTTGCTCTAGTGGAAGAGAGGTCACTTACCGTGTGACTGGTGAAAACGGAAAAAACATGGGAAAGTTAGAACATGGAACCAAAGAGAGTGCGGACAAGTTGTCTCTTAGAAGAACCCAGAGAAAGATTAGCAAGGAGAATGTTACAAGAGAGGTAAAGTCGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

431

Amino Acids

48.25

Weight (kDa)

9.91

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 66 - 127 1.9e-20 DnaJ domain
Zn_ribbon_20 PF23551 241 - 275 3.3e-24 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 195, 805
AccII CGCG 3 cut(s) 1008, 1028, 1291
AciI CCGC 7 cut(s) 506, 527, 548, 569, 611, 1026, 1220
AclI AACGTT 1 cut(s) 242
AcsI RAATTY 2 cut(s) 86, 344
AcuI CTGAAG 3 cut(s) 330, 354, 888
AfaI GTAC 4 cut(s) 257, 628, 649, 755
AfiI CCNNNNNNNGG 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 6 cut(s) 58, 97, 247, 322, 849, 977
AhdI GACNNNNNGTC 1 cut(s) 1228
AjnI CCWGG 1 cut(s) 838
AjuI GAANNNNNNNTTGG 4 cut(s) 449, 481, 917, 949
AluBI AGCT 7 cut(s) 101, 265, 308, 338, 374, 884, 956
AluI AGCT 7 cut(s) 101, 265, 308, 338, 374, 884, 956
Alw21I GWGCWC 1 cut(s) 1064
Alw26I GTCTC 2 cut(s) 421, 1236
Ama87I CYCGRG 2 cut(s) 225, 493
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 6 cut(s) 167, 371, 867, 884, 953, 962
ApoI RAATTY 2 cut(s) 86, 344
Asp700I GAANNNNTTC 2 cut(s) 53, 719
AspS9I GGNCC 1 cut(s) 511
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 272, 1181
AvaI CYCGRG 2 cut(s) 225, 493
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbsI GAAGAC 3 cut(s) 524, 545, 566
Bbv12I GWGCWC 1 cut(s) 1064
BbvI GCAGC 6 cut(s) 154, 383, 871, 879, 949, 965
BceAI ACGGC 2 cut(s) 837, 855
BciT130I CCWGG 1 cut(s) 840
BciVI GTATCC 1 cut(s) 123
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 421, 1236
BfaI CTAG 1 cut(s) 1137
BfmI CTRYAG 4 cut(s) 168, 300, 733, 806
BfuI GTATCC 1 cut(s) 123
BisI GCNGC 6 cut(s) 168, 372, 868, 885, 954, 963
BlsI GCNGC 6 cut(s) 169, 373, 869, 886, 955, 964
Bme1390I CCNGG 2 cut(s) 76, 840
BmeRI GACNNNNNGTC 1 cut(s) 1228
BmeT110I CYCGRG 2 cut(s) 225, 493
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 1207
BmrFI CCNGG 2 cut(s) 76, 840
BmsI GCATC 3 cut(s) 695, 731, 738
BpiI GAAGAC 3 cut(s) 524, 545, 566
BpuEI CTTGAG 1 cut(s) 922
BpuMI CCSGG 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 3 cut(s) 75, 150, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 839
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 3 cut(s) 203, 620, 1171
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 840
BseDI CCNNGG 3 cut(s) 75, 150, 224
BseGI GGATG 3 cut(s) 160, 196, 235
BseLI CCNNNNNNNGG 1 cut(s) 839
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 3 cut(s) 149, 414, 432
BseNI ACTGG 3 cut(s) 203, 620, 1171
BseXI GCAGC 6 cut(s) 154, 383, 871, 879, 949, 965
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 3 cut(s) 1008, 1028, 1291
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 1064
BsiHKCI CYCGRG 2 cut(s) 225, 493
BsiSI CCGG 2 cut(s) 75, 509
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 1 cut(s) 839
BsmAI GTCTC 2 cut(s) 421, 1236
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 2 cut(s) 317, 1051
BsnI GGCC 1 cut(s) 512
Bso31I GGTCTC 1 cut(s) 421
BsoBI CYCGRG 2 cut(s) 225, 493
Bsp1286I GDGCHC 1 cut(s) 1064
Bsp143I GATC 2 cut(s) 379, 1003
Bsp68I TCGCGA 1 cut(s) 1008
BspACI CCGC 7 cut(s) 506, 527, 548, 569, 611, 1026, 1220
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 3 cut(s) 148, 413, 431
BspFNI CGCG 3 cut(s) 1008, 1028, 1291
BspLI GGNNCC 1 cut(s) 1207
BspMAI CTGCAG 2 cut(s) 172, 737
BspTNI GGTCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 3 cut(s) 203, 620, 1171
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 3 cut(s) 75, 150, 224
BssMI GATC 2 cut(s) 379, 1003
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 4 cut(s) 730, 782, 810, 1160
Bst6I CTCTTC 3 cut(s) 242, 1027, 1138
BstAPI GCANNNNNTGC 2 cut(s) 741, 959
BstC8I GCNNGC 7 cut(s) 267, 510, 531, 552, 573, 1010, 1014
BstDEI CTNAG 6 cut(s) 81, 135, 400, 418, 764, 1235
BstENI CCTNNNNNAGG 1 cut(s) 837
BstF5I GGATG 3 cut(s) 160, 196, 235
BstFNI CGCG 3 cut(s) 1008, 1028, 1291
BstKTI GATC 2 cut(s) 382, 1006
BstMAI GTCTC 2 cut(s) 421, 1236
BstMBI GATC 2 cut(s) 379, 1003
BstMWI GCNNNNNNNGC 6 cut(s) 29, 98, 314, 741, 959, 962
BstNI CCWGG 1 cut(s) 840
BstNSI RCATGY 2 cut(s) 329, 983
BstSCI CCNGG 2 cut(s) 74, 838
BstSFI CTRYAG 4 cut(s) 168, 300, 733, 806
BstUI CGCG 3 cut(s) 1008, 1028, 1291
BstV1I GCAGC 6 cut(s) 154, 383, 871, 879, 949, 965
BstV2I GAAGAC 3 cut(s) 524, 545, 566
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 512
BtsCI GGATG 3 cut(s) 160, 196, 235
BtsI GCAGTG 1 cut(s) 955
BtsIMutI CAGTG 1 cut(s) 955
BtuMI TCGCGA 1 cut(s) 1008
Cac8I GCNNGC 7 cut(s) 267, 510, 531, 552, 573, 1010, 1014
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 511
CsiI ACCWGGT 1 cut(s) 838
Csp6I GTAC 4 cut(s) 256, 627, 648, 754
CviAII CATG 6 cut(s) 326, 745, 959, 980, 1186, 1202
CviQI GTAC 4 cut(s) 256, 627, 648, 754
DdeI CTNAG 6 cut(s) 81, 135, 400, 418, 764, 1235
DpnI GATC 2 cut(s) 381, 1005
DpnII GATC 2 cut(s) 379, 1003
DriI GACNNNNNGTC 1 cut(s) 1228
Eam1104I CTCTTC 3 cut(s) 242, 1027, 1138
Eam1105I GACNNNNNGTC 1 cut(s) 1228
EarI CTCTTC 3 cut(s) 242, 1027, 1138
EciI GGCGGA 4 cut(s) 495, 516, 537, 558
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 1126
Eco57I CTGAAG 3 cut(s) 330, 354, 888
Eco88I CYCGRG 2 cut(s) 225, 493
EcoNI CCTNNNNNAGG 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 838
EcoRV GATATC 1 cut(s) 1126
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 746
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 6 cut(s) 329, 748, 962, 983, 1189, 1205
FaqI GGGAC 1 cut(s) 815
FatI CATG 6 cut(s) 325, 744, 958, 979, 1185, 1201
FblI GTMKAC 2 cut(s) 195, 805
Fnu4HI GCNGC 6 cut(s) 168, 372, 868, 885, 954, 963
FokI GGATG 3 cut(s) 167, 203, 242
Fsp4HI GCNGC 6 cut(s) 168, 372, 868, 885, 954, 963
FspBI CTAG 1 cut(s) 1137
GluI GCNGC 6 cut(s) 168, 372, 868, 885, 954, 963
HaeIII GGCC 1 cut(s) 512
HapII CCGG 2 cut(s) 75, 509
Hin1II CATG 6 cut(s) 329, 748, 962, 983, 1189, 1205
HincII GTYRAC 2 cut(s) 196, 778
HindII GTYRAC 2 cut(s) 196, 778
HindIII AAGCTT 2 cut(s) 263, 336
HinfI GANTC 1 cut(s) 1070
HpaII CCGG 2 cut(s) 75, 509
HphI GGTGA 2 cut(s) 272, 1181
Hpy166II GTNNAC 5 cut(s) 184, 196, 778, 806, 930
Hpy188I TCNGA 6 cut(s) 138, 334, 355, 411, 594, 700
Hpy188III TCNNGA 5 cut(s) 116, 227, 724, 939, 1007
Hpy8I GTNNAC 5 cut(s) 184, 196, 778, 806, 930
Hpy99I CGWCG 2 cut(s) 28, 490
HpyAV CCTTC 5 cut(s) 119, 305, 406, 797, 985
HpyCH4III ACNGT 4 cut(s) 730, 782, 810, 1160
HpyCH4IV ACGT 2 cut(s) 242, 646
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 98, 314, 741, 959, 962
HpyF3I CTNAG 6 cut(s) 81, 135, 400, 418, 764, 1235
HpySE526I ACGT 2 cut(s) 242, 646
Hsp92II CATG 6 cut(s) 329, 748, 962, 983, 1189, 1205
KroI GCCGGC 1 cut(s) 508
KroNI GCCGGC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 379, 1003
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 6 cut(s) 154, 383, 871, 879, 949, 965
LweI GCATC 3 cut(s) 695, 731, 738
MabI ACCWGGT 1 cut(s) 838
MaeI CTAG 1 cut(s) 1137
MaeII ACGT 2 cut(s) 242, 646
MaeIII GTNAC 4 cut(s) 782, 1150, 1162, 1270
MalI GATC 2 cut(s) 381, 1005
MboI GATC 2 cut(s) 379, 1003
MhlI GDGCHC 1 cut(s) 1064
MluCI AATT 5 cut(s) 39, 86, 344, 448, 799
MmeI TCCRAC 2 cut(s) 617, 836
MnlI CCTC 8 cut(s) 13, 21, 181, 234, 600, 1095, 1141, 1273
Mph1103I ATGCAT 1 cut(s) 746
MroNI GCCGGC 1 cut(s) 508
MroXI GAANNNNTTC 2 cut(s) 53, 719
MseI TTAA 2 cut(s) 915, 1095
MslI CAYNNNNRTG 1 cut(s) 984
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 2 cut(s) 75, 509
MspR9I CCNGG 2 cut(s) 76, 840
Mva1269I GAATGC 2 cut(s) 317, 1051
MvaI CCWGG 1 cut(s) 840
MvnI CGCG 3 cut(s) 1008, 1028, 1291
MwoI GCNNNNNNNGC 6 cut(s) 29, 98, 314, 741, 959, 962
NaeI GCCGGC 1 cut(s) 510
NciI CCSGG 1 cut(s) 76
NdeII GATC 2 cut(s) 379, 1003
NgoMIV GCCGGC 1 cut(s) 508
NlaIII CATG 6 cut(s) 329, 748, 962, 983, 1189, 1205
NlaIV GGNNCC 1 cut(s) 1207
NmuCI GTSAC 2 cut(s) 1150, 1162
NruI TCGCGA 1 cut(s) 1008
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 2 cut(s) 329, 983
PciI ACATGT 1 cut(s) 325
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 491
PctI GAATGC 2 cut(s) 317, 1051
PdiI GCCGGC 1 cut(s) 510
PdmI GAANNNNTTC 2 cut(s) 53, 719
PfeI GAWTC 1 cut(s) 1070
PkrI GCNGC 6 cut(s) 169, 373, 869, 886, 955, 964
PscI ACATGT 1 cut(s) 325
Psp1406I AACGTT 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 1 cut(s) 1207
PspPI GGNCC 1 cut(s) 511
PstI CTGCAG 2 cut(s) 172, 737
PvuII CAGCTG 1 cut(s) 884
RruI TCGCGA 1 cut(s) 1008
RsaI GTAC 4 cut(s) 257, 628, 649, 755
RsaNI GTAC 4 cut(s) 256, 627, 648, 754
RseI CAYNNNNRTG 1 cut(s) 984
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 915, 1095
SatI GCNGC 6 cut(s) 168, 372, 868, 885, 954, 963
Sau3AI GATC 2 cut(s) 379, 1003
Sau96I GGNCC 1 cut(s) 511
ScrFI CCNGG 2 cut(s) 76, 840
SduI GDGCHC 1 cut(s) 1064
SexAI ACCWGGT 1 cut(s) 838
SfaNI GCATC 3 cut(s) 695, 731, 738
SfcI CTRYAG 4 cut(s) 168, 300, 733, 806
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 1 cut(s) 937
SmoI CTYRAG 1 cut(s) 937
Sse9I AATT 5 cut(s) 39, 86, 344, 448, 799
SsiI CCGC 7 cut(s) 506, 527, 548, 569, 611, 1026, 1220
SspMI CTAG 1 cut(s) 1137
StyD4I CCNGG 2 cut(s) 74, 838
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 4 cut(s) 730, 782, 810, 1160
TaiI ACGT 2 cut(s) 245, 649
TaqI TCGA 2 cut(s) 195, 713
TasI AATT 5 cut(s) 39, 86, 344, 448, 799
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 1070
Tru1I TTAA 2 cut(s) 915, 1095
Tru9I TTAA 2 cut(s) 915, 1095
TscAI CASTG 1 cut(s) 955
TseFI GTSAC 2 cut(s) 1150, 1162
TseI GCWGC 6 cut(s) 167, 371, 867, 884, 953, 962
Tsp45I GTSAC 2 cut(s) 1150, 1162
TspDTI ATGAA 3 cut(s) 77, 252, 414
TspGWI ACGGA 1 cut(s) 1191
TspRI CASTG 1 cut(s) 955
XagI CCTNNNNNAGG 1 cut(s) 837
XapI RAATTY 2 cut(s) 86, 344
XceI RCATGY 2 cut(s) 329, 983
XmiI GTMKAC 2 cut(s) 195, 805
XmnI GAANNNNTTC 2 cut(s) 53, 719
XspI CTAG 1 cut(s) 1137
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.