RLG00000007011

Domain of unknown function (DUF3444)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001305
Physical Location & Seq
Reverse (-)
12660733 .. 12661881
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007011

Sequence Viewer

Length: 1149 bp
ATGGAGTGTAATAAAGATGAGGGCATCAGGGCAAAAGAAATTGCAGAGAGGAAGTTCGGTGAAAAGGATCTAATGGGGGCAAAGAAATTTGCATTGAAGGCTCAATCCTTGTATCCAGGGATTGATGGTATTCAGCAACTTCTGGCGACACTTGATGTATATATGTGTGCAGAGAACAAGATAGGTGGGGAAGCTGATTGGTATGGCATAATTGGTGTGGATCCAGAAGCAGATGATGAGACAGTGAAGAAACAGTATAGAAAACTAGCTCTTAGTCTTCACCCTGATAAGAATAAGTTTATAGGGGCAGATGGAGCATTCAACCTACTTAAGGAGGCATGGGATTTGTTGTCTGATAAAACTAAGAGAGTAGCCTATGACAGGAGGAGGAATGTTTTTGTGCACCAAAAGGTAGTACACCAGAAAGTTTCAACCGCGCAAGGTTCACAGGGGGCCAATGGTTCTGCACACCAGAAAGTTTCAACTGCAGGTCAGGGTTCGCATGGGGCCACTGGTACAACAACAAAAGGTAGAGCATCCAATGCAAAGGCTCAGACGGCTACCAAACGGGCAGCTCCCTTTTCCGCTCCTGCTTCTGTCGAACCAATACCCAAAAGCTTTTGGAGCGAGTGTCCAAAATGCAGGATGCGATTCGAGTATTCAGGAAAGCATCTCAGGTGTAATATTTTTTGCCCGAATTGTAATAAACTATTTCAGGCAGTAGAGATAGTTCCACCAGCCATATGTGGTTCAAAGTCAACCACCCCATTTTATACAGGAAGGAGTACTCCAGCCTCTGAAAATGTTGGAGAGACAGGTTTTATCAGTCATGTGTCACTTACGGAAAAGAGTGTAACCTGGGTTCCATTTTCAAGAGCCGCTGGTGCTTCTCAAGCTGCCAAAGTTGCAAGGGTAGACCTGCAGGGATCTGCCAGAGCTGCTCGCCCTTCTAAACCTGCCAAAGCCTCAAATGAGGAAAAGCGAGCATCTAAGAAAGGGAGGAAATGCAATATAGATGAGGAGACTCTAGCAAGAGCTAGAGAGAGTTTCACTCGGGATCTGAATGACGATGAAAGAAAGAAGAGGTTTGATGCCAGAAGAAAGAAGGACTTTGATGCCAGCGGAAGGAGGGATAATGATATCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

383

Amino Acids

41.98

Weight (kDa)

9.58

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 66 - 127 3.1e-20 DnaJ domain
Zn_ribbon_20 PF23551 207 - 241 2.9e-07 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 479, 927, 964
AccBSI CCGCTC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 915
AccII CGCG 1 cut(s) 437
AciI CCGC 4 cut(s) 435, 585, 879, 1122
AclWI GGATC 5 cut(s) 75, 215, 228, 934, 1065
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 3 cut(s) 417, 517, 787
AfiI CCNNNNNNNGG 3 cut(s) 331, 381, 1125
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 6 cut(s) 97, 322, 432, 483, 753, 873
AjnI CCWGG 2 cut(s) 115, 857
AluBI AGCT 7 cut(s) 194, 269, 575, 618, 896, 938, 1037
AluI AGCT 7 cut(s) 194, 269, 575, 618, 896, 938, 1037
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 3 cut(s) 233, 806, 1016
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 5 cut(s) 75, 215, 228, 934, 1065
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 1 cut(s) 1053
AoxI GGCC 2 cut(s) 453, 507
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 572, 896, 938
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 2 cut(s) 453, 507
AsuHPI GGTGA 2 cut(s) 71, 272
AvaI CYCGRG 1 cut(s) 1053
BaeGI GKGCMC 1 cut(s) 405
BamHI GGATCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 3 cut(s) 584, 883, 925
BccI CCATC 2 cut(s) 119, 305
BceAI ACGGC 1 cut(s) 573
BciT130I CCWGG 2 cut(s) 117, 859
BciVI GTATCC 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 233, 806, 1016
BfaI CTAG 3 cut(s) 266, 1028, 1038
BfmI CTRYAG 3 cut(s) 486, 920, 1145
BfrI CTTAAG 1 cut(s) 329
BfuAI ACCTGC 3 cut(s) 479, 927, 964
BfuI GTATCC 1 cut(s) 123
BisI GCNGC 4 cut(s) 573, 879, 897, 939
BlsI GCNGC 4 cut(s) 574, 880, 898, 940
BmcAI AGTACT 1 cut(s) 787
Bme1390I CCNGG 2 cut(s) 117, 859
BmeT110I CYCGRG 1 cut(s) 1053
BmgT120I GGNCC 2 cut(s) 453, 507
BmiI GGNNCC 4 cut(s) 222, 454, 508, 864
BmrFI CCNGG 2 cut(s) 117, 859
BmsI GCATC 7 cut(s) 33, 545, 636, 679, 995, 1081, 1105
BpiI GAAGAC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 1036, 1068
BpmI CTGGAG 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 876
BsaJI CCNNGG 2 cut(s) 116, 858
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 381, 1125
Bse1I ACTGG 1 cut(s) 517
BseBI CCWGG 2 cut(s) 117, 859
BseDI CCNNGG 2 cut(s) 116, 858
BseGI GGATG 2 cut(s) 536, 651
BseLI CCNNNNNNNGG 3 cut(s) 331, 381, 1125
BseMII CTCAG 2 cut(s) 566, 688
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 2 cut(s) 400, 1034
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 3 cut(s) 584, 883, 925
BsgI GTGCAG 2 cut(s) 189, 450
Bsh1236I CGCG 1 cut(s) 437
BshFI GGCC 2 cut(s) 455, 509
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 1053
BslI CCNNNNNNNGG 3 cut(s) 331, 381, 1125
BsmAI GTCTC 3 cut(s) 233, 806, 1016
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 2 cut(s) 455, 509
BsoBI CYCGRG 1 cut(s) 1053
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 4 cut(s) 67, 220, 926, 1057
BspACI CCGC 4 cut(s) 435, 585, 879, 1122
BspANI GGCC 2 cut(s) 455, 509
BspCNI CTCAG 2 cut(s) 565, 687
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 4 cut(s) 222, 454, 508, 864
BspMAI CTGCAG 2 cut(s) 490, 924
BspMI ACCTGC 3 cut(s) 479, 927, 964
BspPI GGATC 5 cut(s) 75, 215, 228, 934, 1065
BspTI CTTAAG 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 587
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 2 cut(s) 116, 858
BssMI GATC 4 cut(s) 67, 220, 926, 1057
Bst2UI CCWGG 2 cut(s) 117, 859
Bst4CI ACNGT 2 cut(s) 244, 255
Bst6I CTCTTC 1 cut(s) 1076
BstAFI CTTAAG 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 943, 984, 1120
BstDEI CTNAG 5 cut(s) 272, 363, 552, 674, 990
BstENI CCTNNNNNAGG 2 cut(s) 329, 379
BstF5I GGATG 2 cut(s) 536, 651
BstFNI CGCG 1 cut(s) 437
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 4 cut(s) 70, 223, 929, 1060
BstMAI GTCTC 3 cut(s) 233, 806, 1016
BstMBI GATC 4 cut(s) 67, 220, 926, 1057
BstMWI GCNNNNNNNGC 9 cut(s) 98, 314, 542, 557, 624, 884, 893, 905, 938
BstNI CCWGG 2 cut(s) 117, 859
BstSCI CCNGG 2 cut(s) 115, 857
BstSFI CTRYAG 3 cut(s) 486, 920, 1145
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 3 cut(s) 584, 883, 925
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 4 cut(s) 67, 220, 926, 1057
BstYI RGATCY 4 cut(s) 67, 220, 926, 1057
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 2 cut(s) 455, 509
BtsCI GGATG 2 cut(s) 536, 651
BtsIMutI CAGTG 2 cut(s) 249, 510
BveI ACCTGC 3 cut(s) 479, 927, 964
Cac8I GCNNGC 3 cut(s) 943, 984, 1120
CaiI CAGNNNCTG 1 cut(s) 797
CfoI GCGC 1 cut(s) 439
Cfr13I GGNCC 2 cut(s) 453, 507
Csp6I GTAC 3 cut(s) 416, 516, 786
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 3 cut(s) 339, 503, 830
CviQI GTAC 3 cut(s) 416, 516, 786
DdeI CTNAG 5 cut(s) 272, 363, 552, 674, 990
DpnI GATC 4 cut(s) 69, 222, 928, 1059
DpnII GATC 4 cut(s) 67, 220, 926, 1057
Eam1104I CTCTTC 1 cut(s) 1076
EarI CTCTTC 1 cut(s) 1076
Eco32I GATATC 1 cut(s) 1141
Eco88I CYCGRG 1 cut(s) 1053
EcoNI CCTNNNNNAGG 2 cut(s) 329, 379
EcoRII CCWGG 2 cut(s) 115, 857
EcoRV GATATC 1 cut(s) 1141
FaeI CATG 3 cut(s) 342, 506, 833
FalI AAGNNNNNCTT 2 cut(s) 1094, 1126
FatI CATG 3 cut(s) 338, 502, 829
FauNDI CATATG 1 cut(s) 743
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 4 cut(s) 573, 879, 897, 939
FokI GGATG 2 cut(s) 523, 658
Fsp4HI GCNGC 4 cut(s) 573, 879, 897, 939
FspBI CTAG 3 cut(s) 266, 1028, 1038
GlaI GCGC 1 cut(s) 438
GluI GCNGC 4 cut(s) 573, 879, 897, 939
GsuI CTGGAG 1 cut(s) 774
HaeIII GGCC 2 cut(s) 455, 509
HhaI GCGC 1 cut(s) 439
Hin1II CATG 3 cut(s) 342, 506, 833
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 2 cut(s) 651, 1024
HphI GGTGA 2 cut(s) 71, 272
Hpy166II GTNNAC 5 cut(s) 403, 418, 446, 759, 916
Hpy188I TCNGA 4 cut(s) 355, 555, 799, 1062
Hpy188III TCNNGA 4 cut(s) 224, 663, 873, 1055
Hpy8I GTNNAC 5 cut(s) 403, 418, 446, 759, 916
HpyAV CCTTC 5 cut(s) 91, 774, 957, 1099, 1119
HpyCH4III ACNGT 2 cut(s) 244, 255
HpyF10VI GCNNNNNNNGC 9 cut(s) 98, 314, 542, 557, 624, 884, 893, 905, 938
HpyF3I CTNAG 5 cut(s) 272, 363, 552, 674, 990
Hsp92II CATG 3 cut(s) 342, 506, 833
HspAI GCGC 1 cut(s) 437
Kzo9I GATC 4 cut(s) 67, 220, 926, 1057
LmnI GCTCC 4 cut(s) 314, 580, 592, 624
Lsp1109I GCAGC 3 cut(s) 584, 883, 925
LweI GCATC 7 cut(s) 33, 545, 636, 679, 995, 1081, 1105
MaeI CTAG 3 cut(s) 266, 1028, 1038
MaeIII GTNAC 2 cut(s) 834, 853
MalI GATC 4 cut(s) 69, 222, 928, 1059
MbiI CCGCTC 1 cut(s) 587
MboI GATC 4 cut(s) 67, 220, 926, 1057
MboII GAAGA 4 cut(s) 259, 269, 1093, 1110
MflI RGATCY 4 cut(s) 67, 220, 926, 1057
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 4 cut(s) 39, 86, 210, 697
MlyI GAGTC 1 cut(s) 1018
MmeI TCCRAC 1 cut(s) 787
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 881, 1122
MspCI CTTAAG 1 cut(s) 329
MspR9I CCNGG 2 cut(s) 117, 859
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 2 cut(s) 117, 859
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 9 cut(s) 98, 314, 542, 557, 624, 884, 893, 905, 938
NdeI CATATG 1 cut(s) 743
NdeII GATC 4 cut(s) 67, 220, 926, 1057
NlaIII CATG 3 cut(s) 342, 506, 833
NlaIV GGNNCC 4 cut(s) 222, 454, 508, 864
NmuCI GTSAC 1 cut(s) 834
PctI GAATGC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 651
PkrI GCNGC 4 cut(s) 574, 880, 898, 940
PleI GAGTC 1 cut(s) 1018
PpsI GAGTC 1 cut(s) 1018
Psp6I CCWGG 2 cut(s) 115, 857
PspGI CCWGG 2 cut(s) 115, 857
PspN4I GGNNCC 4 cut(s) 222, 454, 508, 864
PspPI GGNCC 2 cut(s) 453, 507
PsrI GAACNNNNNNTAC 4 cut(s) 714, 746, 846, 878
PstI CTGCAG 2 cut(s) 490, 924
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 4 cut(s) 67, 220, 926, 1057
RsaI GTAC 3 cut(s) 417, 517, 787
RsaNI GTAC 3 cut(s) 416, 516, 786
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 4 cut(s) 573, 879, 897, 939
Sau3AI GATC 4 cut(s) 67, 220, 926, 1057
Sau96I GGNCC 2 cut(s) 453, 507
SbfI CCTGCAGG 1 cut(s) 924
ScaI AGTACT 1 cut(s) 787
SchI GAGTC 1 cut(s) 1018
ScrFI CCNGG 2 cut(s) 117, 859
SdaI CCTGCAGG 1 cut(s) 924
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 7 cut(s) 33, 545, 636, 679, 995, 1081, 1105
SfcI CTRYAG 3 cut(s) 486, 920, 1145
SmlI CTYRAG 2 cut(s) 329, 891
SmoI CTYRAG 2 cut(s) 329, 891
Sse8387I CCTGCAGG 1 cut(s) 924
Sse9I AATT 4 cut(s) 39, 86, 210, 697
SsiI CCGC 4 cut(s) 435, 585, 879, 1122
SspI AATATT 1 cut(s) 685
SspMI CTAG 3 cut(s) 266, 1028, 1038
StyD4I CCNGG 2 cut(s) 115, 857
TaaI ACNGT 2 cut(s) 244, 255
TaqI TCGA 2 cut(s) 600, 654
TasI AATT 4 cut(s) 39, 86, 210, 697
TatI WGTACW 2 cut(s) 415, 785
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 1 cut(s) 651
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 249, 517
TseFI GTSAC 1 cut(s) 834
TseI GCWGC 3 cut(s) 572, 896, 938
Tsp45I GTSAC 1 cut(s) 834
TspDTI ATGAA 1 cut(s) 1086
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 2 cut(s) 249, 517
Vha464I CTTAAG 1 cut(s) 329
VneI GTGCAC 1 cut(s) 401
XagI CCTNNNNNAGG 2 cut(s) 329, 379
XapI RAATTY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 915
XspI CTAG 3 cut(s) 266, 1028, 1038
ZrmI AGTACT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.