Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8191322.1

Orthogroup ID

OG0001305

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 474

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8191322.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ggtgatgtttgggctctctacaggaattggtccaatgactggaatgcattgacaccggacgaagtaatacacaagtatgaaatggtggaagtggttgaagattacaatgaggaacttggggttactgtaactcacctgctgaaagtttctggtttcaagacagtgtttcggcgtcatttggatcccacagctgtcatgatgagaattcccagagaagagatgtttagattgtctcatcaagtccctgcacacttgcttacaggtgaagaagatctaaatgctccaaaaggttgttgggatcttgatccagcagcaactccggctgatcttcttgaggtaataactgatgttcaagatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

120

Amino Acids

13.8

Weight (kDa)

4.58

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380
fragaria_vesca	FvH4_4g23600 FvH4_4g23600 FvH4_4g23600 FvH4_6g05390 FvH4_6g05390
malus_domestica	MD13G1120800.v1.1 MD16G1120800.v1.1
prunus_persica	Prupe.1G224400_v2.0.a1
pyrus_communis	pycom16g10320
rosa_chinensis	RchiOBHm_Chr4g0430021 RchiOBHm_Chr4g0430031 RchiOBHm_Chr7g0212821 RchiOBHm_Chr7g0212831
rosa_laevigata	RLG00000002867 RLG00000007011 RLG00000007012
rosa_multiflora	Rmu_co8191322.1_g000001 Rmu_sc0000394.1_g000043 Rmu_sc0000394.1_g000047 Rmu_sc0013698.1_g000012 Rmu_ssc0000150.1_g000033 Rmu_ssc0000150.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246530 Rroxscaffold_5G00371840 Rroxscaffold_5G00371850
rosa_rugosa	Rorug04G0239800 Rorug04G0239800 Rorug07G0136800
rosa_samantha	Rh4AG296700 Rh4AG296800 Rh4BG303000 Rh4BG303100 Rh4CG318500 Rh4CG318600 Rh4DG300300 Rh4DG300400 Rh7AG268400 Rh7BG263900 Rh7BG264000 Rh7CG287400 Rh7DG276500
rosa_wichuraiana	Rw4G025700 Rw4G025720 Rw7G023190 Rw7G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	144
AccB7I	CCANNNNNTGG	1 cut(s)	39
AclWI	GGATC	4 cut(s)	176, 189, 299, 306
AcsI	RAATTY	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	98, 157, 353
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	4 cut(s)	176, 189, 299, 306
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	3 cut(s)	14, 125, 275
AvaII	GGWCC	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	144
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	303
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	56, 320
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	5 cut(s)	181, 271, 298, 304, 325
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	144
BspPI	GGATC	4 cut(s)	176, 189, 299, 306
BsrI	ACTGG	1 cut(s)	44
BssMI	GATC	5 cut(s)	181, 271, 298, 304, 325
BssNI	GRCGYC	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	127, 163
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	172
BstKTI	GATC	5 cut(s)	184, 274, 301, 307, 328
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	5 cut(s)	181, 271, 298, 304, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	3 cut(s)	181, 271, 298
BstYI	RGATCY	3 cut(s)	181, 271, 298
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	144
CciI	TCATGA	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	161
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	3 cut(s)	14, 191, 323
CviKI_1	RGCY	3 cut(s)	14, 191, 323
DpnI	GATC	5 cut(s)	183, 273, 300, 306, 327
DpnII	GATC	5 cut(s)	181, 271, 298, 304, 325
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	16
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	78, 197
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HapII	CCGG	2 cut(s)	56, 320
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	199
HpaII	CCGG	2 cut(s)	56, 320
HphI	GGTGA	3 cut(s)	14, 125, 275
Hpy188III	TCNNGA	5 cut(s)	157, 196, 302, 332, 353
HpyCH4III	ACNGT	2 cut(s)	127, 163
HpyCH4V	TGCA	2 cut(s)	47, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	181, 271, 298, 304, 325
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	121, 127
MalI	GATC	5 cut(s)	183, 273, 300, 306, 327
MboI	GATC	5 cut(s)	181, 271, 298, 304, 325
MboII	GAAGA	5 cut(s)	110, 227, 278, 281, 320
MflI	RGATCY	3 cut(s)	181, 271, 298
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	2 cut(s)	25, 204
MnlI	CCTC	2 cut(s)	103, 328
Mph1103I	ATGCAT	1 cut(s)	49
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	56, 320
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	5 cut(s)	181, 271, 298, 304, 325
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	49
PagI	TCATGA	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	30
PsuI	RGATCY	3 cut(s)	181, 271, 298
PvuII	CAGCTG	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	75
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	5 cut(s)	181, 271, 298, 304, 325
Sau96I	GGNCC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	138, 193, 265, 292, 339
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	25, 204
TaaI	ACNGT	2 cut(s)	127, 163
TasI	AATT	2 cut(s)	25, 204
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.