RchiOBHm_Chr4g0430021

Domain of unknown function (DUF3444)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001305
Physical Location & Seq
Forward (+)
54696593 .. 54700310
3718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39878

Sequence Viewer

Length: 2220 bp
ATGGAGTGCAATAGAGATGAGGCCACCAGGGCGAAAGAGATTGCGGAGAAGAAGTTTGCGGCAAGGGATGTAATGGGAGCCAAGAAATTTGCTTTGAAGGCTCAAAATTTGTTTCCGGGGCTGGAGGGTATGCCCCAAATGTTGGCAACACTTGATGTACATGTTGCTGCAGAGAACAGAGTAAATGGGGAAGTAGATTGGTATGGGGTACTTGGTCTCGAGCCAAGAGCAGATGACGAGGCGGTGAGGAAACAGTATAGGAAACTAGCTCTTATGCTTCACCCCGATAAGAACAAGTCTGTCGGGGCTGATGGAGCATTTAAGCTACTTTCTGAGGCATGGAGTTTGTTGTCTGATAAAGCTAAGAGGGGAGCGTATGACCAGAGGAGGAAGGCTTCGACTTCACAGGCCCCTCCTGGGGCCAATGGGTTCTACAATTTCACAAAAAGTTCAACCTCCAGTACAAAGCCTCCAAAGAGTACTTCAAGGGCAGCTCGCTCTTCAGCTCCTGGTTCAAATCTTAAACCGAAACCCAGTACCTTTTGGACCGTCTGTCACAAGTGCAGGATGCAGTATGAGTACATGAGAGTTTATCTTAATCATAACCTTCTGTGCCCGAATTGCCATGAAGCATTTTTTGCAGTCGAAATAACTCCTCCACCTACAGGTGCCTCCAAGTCATCCACCTCATGGAATCCATCACATCAGCGACAGAATTCGAATCATGAAAAAAGCACATATAATACAGGAAGAAGTAGAGATATAGGAGGACCTTCAGGATTCACTGAATCATATCACCAAAACAACTTCCAGTGGGGTCCATTCTCCAAAGCATCTGGTGCTTCTTCGGCTGCCCAAGCTGCAAGCGTGGTTCAACAGGCATACGAGAAAGCAAAGAGAGAGCGCGAGGAAGCTCAAGCAGCAACAAAAAGAGAGGAGGCCTTGCGGAGGAAGCATCAAGCCTCCTCCAAGAAGGTGAGTGGCACTTCATCTAATGCAGCAAAGAGAAGAAGAGGAATGGATGATGTTGGTGGTAGCATCAAGCCTCCAAGGGACGTTACGAATCAAATGGGTGGGGTAGCTGGAGCTGCAAACTTTTTTGGATCTAGACAGCCTAATTTTGAGTCAGGTAGGGTCAATGGAACCGCCAAGTCCAGTATCACAAGGGATTTCTCCGTGCTTGAAGTTCATAATTTACTGGCGGACAAGGCTAGGAAGGAAATTCGCAGGAAACTGAATGAACAGAAATCTGAAACTGCAGTCAAACAGGTGGTAAATGGGAATGAGACAGAGAAATCTTTGAAAAACGTTGACGCACAGCGTGATCAGAACAAGTCTGGTGAGTCAGTTGATAGAAAGAATGGAGCTAGTGAGAGGAAACATTCTGTCACTTCTAGTGACATAGCAGATGCAGAAACCTTGCAGTCAATGACAATAACTGTTCCAGATTCAGATTTTCATGATTTTGACAGGGACCGGACTGAAGAGTCTTTTGGAGAAAATCAGGTCTGGGCCGCATATGATGGCGATGATGGGATGCCTCGATATTATGCCATAATTCATAGTGTGATATCTTTAAACCCATTCAAAATGCGGATCAGTTGGCTTAACTCCAAAACAAATAGTGAATTGGGCCCTCTAAACTGGGTTGCTTCTGGTTTCACAAAAACATGTGGGGATTTCAGAGTTGGCAAGTATGAAATCAACAAATCACTCAATTCTTTTTCGCACAAAGTTCGGTGGACAAAAGGTGCACGAGGGATTATCTGTATATATCCCAAGAAGGGTGATGTTTGGGCTCTCTATAGGAATTGGTCCCCTGATTGGAATGAATTGACAGCCGACGAAGTAATACACAAGTATGATATGGTGGAAGTGGTTGAAGACTATAATGAAGAACTAGGTGTAACCGTAACTCCTCTGGTGAAAGTGGCTGGTTTCAAGTCAGTGTTCCACCGGCATTTGGATCCCAGAGAGGTTAGGAGGATTCCGAGAGAAGAGATGTTCCGATTCTCTCATCATGTTCCTTCATATTTGCATACCGGTCTAGAAGCATCAAATGCTCCAAAGGGTTGTCGGGAGCTAGATCCAGCAGCTACACCGTTAGAACTTCTTCAGGTAGTAACTGATGTGAAAGATGAAGAGATTATGGAGATAGATGAGAAACCTAAGGAAGTTGATGTGATAGATATGTTGATGTTGGAAATACTAATGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

739

Amino Acids

82.63

Weight (kDa)

9.0

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 66 - 127 2.2e-20 DnaJ domain
Zn_ribbon_20 PF23551 181 - 215 5.1e-20 Zinc beta-ribbon domain
DUF3444 PF11926 476 - 682 5.2e-81 Domain of unknown function (DUF3444)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1486
AccB1I GGYRCC 1 cut(s) 668
AccB7I CCANNNNNTGG 2 cut(s) 142, 690
AccII CGCG 1 cut(s) 906
AciI CCGC 8 cut(s) 44, 59, 242, 946, 1146, 1202, 1515, 1594
AclI AACGTT 1 cut(s) 1308
AclWI GGATC 5 cut(s) 1111, 1604, 1961, 1974, 2081
AcsI RAATTY 4 cut(s) 86, 106, 715, 1221
AcuI CTGAAG 4 cut(s) 486, 759, 1503, 2099
AdeI CACNNNGTG 1 cut(s) 1322
AfaI GTAC 6 cut(s) 159, 210, 463, 481, 538, 581
AfiI CCNNNNNNNGG 9 cut(s) 142, 417, 418, 665, 690, 948, 1784, 1824, 1963
AflIII ACRYGT 2 cut(s) 160, 1670
AgeI ACCGGT 1 cut(s) 2042
AhdI GACNNNNNGTC 1 cut(s) 552
AjnI CCWGG 3 cut(s) 26, 415, 508
AjuI GAANNNNNNNTTGG 4 cut(s) 466, 498, 1476, 1508
Alw21I GWGCWC 1 cut(s) 1756
Alw26I GTCTC 2 cut(s) 221, 1280
Alw44I GTGCAC 1 cut(s) 1752
AlwI GGATC 5 cut(s) 1111, 1604, 1961, 1974, 2081
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 6 cut(s) 21, 408, 420, 939, 1512, 1633
ApaI GGGCCC 1 cut(s) 1637
ApaLI GTGCAC 1 cut(s) 1752
ApeKI GCWGC 8 cut(s) 167, 491, 851, 860, 920, 998, 1088, 2093
ApoI RAATTY 4 cut(s) 86, 106, 715, 1221
AsiGI ACCGGT 1 cut(s) 2042
Asp700I GAANNNNTTC 1 cut(s) 2112
AspLEI GCGC 1 cut(s) 906
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 7 cut(s) 256, 272, 788, 988, 1352, 1799, 1936
AsuII TTCGAA 1 cut(s) 719
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 5 cut(s) 546, 770, 818, 1474, 1815
AxyI CCTNAGG 1 cut(s) 2169
BaeGI GKGCMC 3 cut(s) 617, 1637, 1756
BamHI GGATCC 1 cut(s) 1966
BanI GGYRCC 1 cut(s) 668
BanII GRGCYC 2 cut(s) 1637, 1801
BauI CACGAG 1 cut(s) 1755
BbsI GAAGAC 1 cut(s) 1890
Bbv12I GWGCWC 1 cut(s) 1756
BbvI GCAGC 8 cut(s) 154, 503, 838, 847, 932, 1010, 1075, 2105
BccI CCATC 4 cut(s) 305, 706, 1517, 1526
BcgI CGANNNNNNTGC 2 cut(s) 1718, 1752
BciT130I CCWGG 3 cut(s) 28, 417, 510
BclI TGATCA 1 cut(s) 1324
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 221, 1280
BfaI CTAG 8 cut(s) 266, 1107, 1212, 1368, 1395, 1901, 2048, 2084
BfmI CTRYAG 4 cut(s) 168, 663, 1257, 1804
BglI GCCNNNNNGGC 1 cut(s) 29
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 4 cut(s) 28, 117, 417, 510
Bme18I GGWCC 5 cut(s) 546, 770, 818, 1474, 1815
BmeRI GACNNNNNGTC 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 218
BmrFI CCNGG 4 cut(s) 28, 117, 417, 510
BmrI ACTGGG 2 cut(s) 528, 1654
BmsI GCATC 7 cut(s) 558, 842, 964, 1047, 1399, 1527, 2063
BmuI ACTGGG 2 cut(s) 528, 1654
BpiI GAAGAC 1 cut(s) 1890
BpmI CTGGAG 3 cut(s) 143, 442, 1104
Bpu14I TTCGAA 1 cut(s) 719
BpuEI CTTGAG 1 cut(s) 900
BpuMI CCSGG 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 27, 116, 416, 1049
BsaWI WCCGGW 2 cut(s) 1476, 2042
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 454, 484, 1900, 1930
Bsc4I CCNNNNNNNGG 9 cut(s) 142, 417, 418, 665, 690, 948, 1784, 1824, 1963
Bse118I RCCGGY 2 cut(s) 1956, 2042
Bse1I ACTGG 6 cut(s) 459, 534, 811, 1155, 1203, 1649
Bse21I CCTNAGG 1 cut(s) 2169
BseBI CCWGG 3 cut(s) 28, 417, 510
BseDI CCNNGG 4 cut(s) 27, 116, 416, 1049
BseGI GGATG 5 cut(s) 73, 573, 680, 1027, 1542
BseLI CCNNNNNNNGG 9 cut(s) 142, 417, 418, 665, 690, 948, 1784, 1824, 1963
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 6 cut(s) 459, 534, 811, 1155, 1203, 1649
BseRI GAGGAG 5 cut(s) 400, 645, 950, 955, 1908
BseSI GKGCMC 3 cut(s) 617, 1637, 1756
BseXI GCAGC 8 cut(s) 154, 503, 838, 847, 932, 1010, 1075, 2105
BsgI GTGCAG 1 cut(s) 583
Bsh1236I CGCG 1 cut(s) 906
BshFI GGCC 6 cut(s) 23, 410, 422, 941, 1514, 1635
BshNI GGYRCC 1 cut(s) 668
BshTI ACCGGT 1 cut(s) 2042
BsiHKAI GWGCWC 1 cut(s) 1756
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 4 cut(s) 116, 1477, 1957, 2043
BslFI GGGAC 3 cut(s) 1067, 1487, 1801
BslI CCNNNNNNNGG 9 cut(s) 142, 417, 418, 665, 690, 948, 1784, 1824, 1963
BsmAI GTCTC 2 cut(s) 221, 1280
BsmFI GGGAC 3 cut(s) 1067, 1487, 1801
BsnI GGCC 6 cut(s) 23, 410, 422, 941, 1514, 1635
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 719
Bsp120I GGGCCC 1 cut(s) 1633
Bsp1286I GDGCHC 4 cut(s) 617, 1637, 1756, 1801
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 5 cut(s) 1103, 1324, 1596, 1966, 2086
BspACI CCGC 8 cut(s) 44, 59, 242, 946, 1146, 1202, 1515, 1594
BspANI GGCC 6 cut(s) 23, 410, 422, 941, 1514, 1635
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 906
BspHI TCATGA 2 cut(s) 724, 1459
BspMAI CTGCAG 2 cut(s) 172, 1261
BspPI GGATC 5 cut(s) 1111, 1604, 1961, 1974, 2081
BspQI GCTCTTC 1 cut(s) 505
BspT104I TTCGAA 1 cut(s) 719
BspT107I GGYRCC 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 221
BsrFI RCCGGY 2 cut(s) 1956, 2042
BsrGI TGTACA 1 cut(s) 157
BsrI ACTGG 6 cut(s) 459, 534, 811, 1155, 1203, 1649
BssAI RCCGGY 2 cut(s) 1956, 2042
BssECI CCNNGG 4 cut(s) 27, 116, 416, 1049
BssMI GATC 5 cut(s) 1103, 1324, 1596, 1966, 2086
BssSI CACGAG 1 cut(s) 1755
BssT1I CCWWGG 1 cut(s) 1049
Bst2BI CACGAG 1 cut(s) 1755
Bst2UI CCWGG 3 cut(s) 28, 417, 510
Bst4CI ACNGT 5 cut(s) 255, 550, 1441, 1912, 2103
Bst6I CTCTTC 5 cut(s) 505, 1006, 1479, 1992, 2136
BstAPI GCANNNNNTGC 3 cut(s) 638, 839, 2060
BstAUI TGTACA 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 719
BstC8I GCNNGC 2 cut(s) 496, 865
BstDEI CTNAG 3 cut(s) 333, 363, 2169
BstENI CCTNNNNNAGG 1 cut(s) 946
BstF5I GGATG 5 cut(s) 73, 573, 680, 1027, 1542
BstFNI CGCG 1 cut(s) 906
BstHHI GCGC 1 cut(s) 906
BstKTI GATC 5 cut(s) 1106, 1327, 1599, 1969, 2089
BstMAI GTCTC 2 cut(s) 221, 1280
BstMBI GATC 5 cut(s) 1103, 1324, 1596, 1966, 2086
BstNI CCWGG 3 cut(s) 28, 417, 510
BstNSI RCATGY 2 cut(s) 164, 1674
BstSCI CCNGG 4 cut(s) 26, 115, 415, 508
BstSFI CTRYAG 4 cut(s) 168, 663, 1257, 1804
BstSLI GKGCMC 3 cut(s) 617, 1637, 1756
BstUI CGCG 1 cut(s) 906
BstV1I GCAGC 8 cut(s) 154, 503, 838, 847, 932, 1010, 1075, 2105
BstV2I GAAGAC 1 cut(s) 1890
BstX2I RGATCY 3 cut(s) 1103, 1966, 2086
BstYI RGATCY 3 cut(s) 1103, 1966, 2086
Bsu36I CCTNAGG 1 cut(s) 2169
BsuRI GGCC 6 cut(s) 23, 410, 422, 941, 1514, 1635
BtgZI GCGATG 1 cut(s) 1542
BtsCI GGATG 5 cut(s) 73, 573, 680, 1027, 1542
BtsIMutI CAGTG 3 cut(s) 783, 818, 1953
Cac8I GCNNGC 2 cut(s) 496, 865
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 2 cut(s) 724, 1459
CfoI GCGC 1 cut(s) 906
Cfr10I RCCGGY 2 cut(s) 1956, 2042
CseI GACGC 1 cut(s) 1322
Csp6I GTAC 6 cut(s) 158, 209, 462, 480, 537, 580
CspAI ACCGGT 1 cut(s) 2042
CviAII CATG 9 cut(s) 161, 339, 583, 626, 690, 725, 1460, 1671, 2021
CviQI GTAC 6 cut(s) 158, 209, 462, 480, 537, 580
DdeI CTNAG 3 cut(s) 333, 363, 2169
DpnI GATC 5 cut(s) 1105, 1326, 1598, 1968, 2088
DpnII GATC 5 cut(s) 1103, 1324, 1596, 1966, 2086
DraI TTTAAA 1 cut(s) 1578
DraIII CACNNNGTG 1 cut(s) 1322
DrdI GACNNNNNNGTC 1 cut(s) 1486
DriI GACNNNNNGTC 1 cut(s) 552
DseDI GACNNNNNNGTC 1 cut(s) 1486
Eam1104I CTCTTC 5 cut(s) 505, 1006, 1479, 1992, 2136
Eam1105I GACNNNNNGTC 1 cut(s) 552
EarI CTCTTC 5 cut(s) 505, 1006, 1479, 1992, 2136
EciI GGCGGA 1 cut(s) 1217
Eco130I CCWWGG 1 cut(s) 1049
Eco147I AGGCCT 1 cut(s) 941
Eco24I GRGCYC 2 cut(s) 1637, 1801
Eco31I GGTCTC 1 cut(s) 221
Eco32I GATATC 1 cut(s) 1572
Eco47I GGWCC 5 cut(s) 546, 770, 818, 1474, 1815
Eco57I CTGAAG 4 cut(s) 486, 759, 1503, 2099
Eco81I CCTNAGG 1 cut(s) 2169
Eco88I CYCGRG 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 946
EcoO109I RGGNCCY 3 cut(s) 409, 770, 1634
EcoRI GAATTC 1 cut(s) 715
EcoRII CCWGG 3 cut(s) 26, 415, 508
EcoRV GATATC 1 cut(s) 1572
EcoT14I CCWWGG 1 cut(s) 1049
EcoT38I GRGCYC 2 cut(s) 1637, 1801
ErhI CCWWGG 1 cut(s) 1049
FaeI CATG 9 cut(s) 164, 342, 586, 629, 693, 728, 1463, 1674, 2024
FaqI GGGAC 3 cut(s) 1067, 1487, 1801
FatI CATG 9 cut(s) 160, 338, 582, 625, 689, 724, 1459, 1670, 2020
FauNDI CATATG 1 cut(s) 1519
FbaI TGATCA 1 cut(s) 1324
FokI GGATG 5 cut(s) 80, 580, 667, 1034, 1549
FriOI GRGCYC 2 cut(s) 1637, 1801
FspBI CTAG 8 cut(s) 266, 1107, 1212, 1368, 1395, 1901, 2048, 2084
GlaI GCGC 1 cut(s) 905
GsuI CTGGAG 3 cut(s) 143, 442, 1104
HaeIII GGCC 6 cut(s) 23, 410, 422, 941, 1514, 1635
HapII CCGG 4 cut(s) 116, 1477, 1957, 2043
HgaI GACGC 1 cut(s) 1322
HhaI GCGC 1 cut(s) 906
Hin1II CATG 9 cut(s) 164, 342, 586, 629, 693, 728, 1463, 1674, 2024
Hin6I GCGC 1 cut(s) 904
HinP1I GCGC 1 cut(s) 904
HincII GTYRAC 1 cut(s) 1312
HindII GTYRAC 1 cut(s) 1312
HpaII CCGG 4 cut(s) 116, 1477, 1957, 2043
HphI GGTGA 7 cut(s) 256, 272, 788, 988, 1352, 1799, 1936
Hpy166II GTNNAC 3 cut(s) 1312, 1743, 1754
Hpy188I TCNGA 8 cut(s) 334, 355, 1252, 1329, 1453, 1685, 1992, 2009
Hpy188III TCNNGA 8 cut(s) 218, 725, 777, 1107, 1445, 1460, 2048, 2078
Hpy8I GTNNAC 3 cut(s) 1312, 1743, 1754
Hpy99I CGWCG 1 cut(s) 1847
HpyAV CCTTC 8 cut(s) 91, 385, 617, 783, 967, 1210, 1777, 2037
HpyCH4III ACNGT 5 cut(s) 255, 550, 1441, 1912, 2103
HpyCH4IV ACGT 2 cut(s) 1056, 1308
HpyF3I CTNAG 3 cut(s) 333, 363, 2169
HpySE526I ACGT 2 cut(s) 1056, 1308
Hsp92II CATG 9 cut(s) 164, 342, 586, 629, 693, 728, 1463, 1674, 2024
HspAI GCGC 1 cut(s) 904
Ksp22I TGATCA 1 cut(s) 1324
Kzo9I GATC 5 cut(s) 1103, 1324, 1596, 1966, 2086
LguI GCTCTTC 1 cut(s) 505
LmnI GCTCC 8 cut(s) 77, 314, 371, 511, 1085, 1364, 2068, 2080
Lsp1109I GCAGC 8 cut(s) 154, 503, 838, 847, 932, 1010, 1075, 2105
LweI GCATC 7 cut(s) 558, 842, 964, 1047, 1399, 1527, 2063
MaeI CTAG 8 cut(s) 266, 1107, 1212, 1368, 1395, 1901, 2048, 2084
MaeII ACGT 2 cut(s) 1056, 1308
MaeIII GTNAC 7 cut(s) 554, 1057, 1387, 1397, 1906, 1912, 2122
MalI GATC 5 cut(s) 1105, 1326, 1598, 1968, 2088
MboI GATC 5 cut(s) 1103, 1324, 1596, 1966, 2086
MflI RGATCY 3 cut(s) 1103, 1966, 2086
MhlI GDGCHC 4 cut(s) 617, 1637, 1756, 1801
MlyI GAGTC 3 cut(s) 1133, 1352, 1496
MmeI TCCRAC 1 cut(s) 2181
MroXI GAANNNNTTC 1 cut(s) 2112
MseI TTAA 5 cut(s) 321, 522, 597, 1577, 1608
MslI CAYNNNNRTG 1 cut(s) 1860
MspI CCGG 4 cut(s) 116, 1477, 1957, 2043
MspR9I CCNGG 4 cut(s) 28, 117, 417, 510
MvaI CCWGG 3 cut(s) 28, 417, 510
MvnI CGCG 1 cut(s) 906
NciI CCSGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 1519
NdeII GATC 5 cut(s) 1103, 1324, 1596, 1966, 2086
NlaIII CATG 9 cut(s) 164, 342, 586, 629, 693, 728, 1463, 1674, 2024
NmuCI GTSAC 3 cut(s) 554, 1387, 1397
NspI RCATGY 2 cut(s) 164, 1674
NspV TTCGAA 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 218
PagI TCATGA 2 cut(s) 724, 1459
PceI AGGCCT 1 cut(s) 941
PciI ACATGT 2 cut(s) 160, 1670
PciSI GCTCTTC 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 2112
PfeI GAWTC 8 cut(s) 694, 721, 780, 788, 1063, 1448, 1987, 2010
PflMI CCANNNNNTGG 2 cut(s) 142, 690
PinAI ACCGGT 1 cut(s) 2042
PleI GAGTC 3 cut(s) 1132, 1351, 1495
PpsI GAGTC 3 cut(s) 1132, 1351, 1495
PpuMI RGGWCCY 1 cut(s) 770
PscI ACATGT 2 cut(s) 160, 1670
Psp1406I AACGTT 1 cut(s) 1308
Psp5II RGGWCCY 1 cut(s) 770
Psp6I CCWGG 3 cut(s) 26, 415, 508
PspGI CCWGG 3 cut(s) 26, 415, 508
PspOMI GGGCCC 1 cut(s) 1633
PspPPI RGGWCCY 1 cut(s) 770
PstI CTGCAG 2 cut(s) 172, 1261
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 3 cut(s) 1103, 1966, 2086
RsaI GTAC 6 cut(s) 159, 210, 463, 481, 538, 581
RsaNI GTAC 6 cut(s) 158, 209, 462, 480, 537, 580
RseI CAYNNNNRTG 1 cut(s) 1860
SapI GCTCTTC 1 cut(s) 505
SaqAI TTAA 5 cut(s) 321, 522, 597, 1577, 1608
Sau3AI GATC 5 cut(s) 1103, 1324, 1596, 1966, 2086
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 3 cut(s) 1133, 1352, 1496
ScrFI CCNGG 4 cut(s) 28, 117, 417, 510
SduI GDGCHC 4 cut(s) 617, 1637, 1756, 1801
SfaNI GCATC 7 cut(s) 558, 842, 964, 1047, 1399, 1527, 2063
SfcI CTRYAG 4 cut(s) 168, 663, 1257, 1804
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 719
SinI GGWCC 5 cut(s) 546, 770, 818, 1474, 1815
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 1860
SmlI CTYRAG 2 cut(s) 218, 915
SmoI CTYRAG 2 cut(s) 218, 915
SseBI AGGCCT 1 cut(s) 941
SsiI CCGC 8 cut(s) 44, 59, 242, 946, 1146, 1202, 1515, 1594
SspMI CTAG 8 cut(s) 266, 1107, 1212, 1368, 1395, 1901, 2048, 2084
StuI AGGCCT 1 cut(s) 941
StyD4I CCNGG 4 cut(s) 26, 115, 415, 508
StyI CCWWGG 1 cut(s) 1049
TaaI ACNGT 5 cut(s) 255, 550, 1441, 1912, 2103
TaiI ACGT 2 cut(s) 1059, 1311
TaqI TCGA 5 cut(s) 219, 398, 645, 719, 1543
TatI WGTACW 4 cut(s) 157, 461, 479, 579
TauI GCSGC 2 cut(s) 62, 1517
TfiI GAWTC 8 cut(s) 694, 721, 780, 788, 1063, 1448, 1987, 2010
Tru1I TTAA 5 cut(s) 321, 522, 597, 1577, 1608
Tru9I TTAA 5 cut(s) 321, 522, 597, 1577, 1608
TscAI CASTG 3 cut(s) 790, 818, 1953
TseFI GTSAC 3 cut(s) 554, 1387, 1397
TseI GCWGC 8 cut(s) 167, 491, 851, 860, 920, 998, 1088, 2093
Tsp45I GTSAC 3 cut(s) 554, 1387, 1397
TspGWI ACGGA 1 cut(s) 1165
TspRI CASTG 3 cut(s) 790, 818, 1953
Van91I CCANNNNNTGG 2 cut(s) 142, 690
VneI GTGCAC 1 cut(s) 1752
VpaK11BI GGWCC 5 cut(s) 546, 770, 818, 1474, 1815
XagI CCTNNNNNAGG 1 cut(s) 946
XapI RAATTY 4 cut(s) 86, 106, 715, 1221
XbaI TCTAGA 2 cut(s) 1106, 2047
XceI RCATGY 2 cut(s) 164, 1674
XhoI CTCGAG 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 2112
XspI CTAG 8 cut(s) 266, 1107, 1212, 1368, 1395, 1901, 2048, 2084
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.