Rh7BG264000

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001305
Physical Location & Seq
Forward (+)
24104943 .. 24105668
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG264000.1

Sequence Viewer

Length: 726 bp
ATGACGTCAATTGATGTTCCTGATCCTGATTTTCACAATTTTGATGAGGATCGAACAGAAAAGTCTTTTAAAAAAAATCAGGTCTGGGCCGCCTATGATGAGGTTAATGGGATGCCTCGGTATTATGCCAAAATTCAGAGTGTAAGTTCTTTAGATCCTTTCACAATGCGGATCAGTTGGCTTGATTCAAAAACCAATAGAGAACTGGGGCCTCTAAACTGGGTGTCTTCTGGTTTCTCAAAAACATGTGGGGAGTTCAGAGTAGGCAAGCATGAAGAATGCAAAAACGCACTCAATTCTTTTTCACACAAAGTTTGGTGGAAAAAAGGTGCACGGGGAACAGTGTGTATATATCCTAGGAAGGGTGATGTTTGGGCTCTCTACAGGAATTGGTCCAATGACTGGAATGCATTGACACCGGACGAAGTAATACACAAGTATGAAATGGTGGAAGTGGTTGAAGATTACAATGAGGAACTTGGGGTTACTGTAACTCACCTGCTGAAAGTTTCTGGTTTCAAGACAGTGTTTCGGCGTCATTTGGATCCCACAGCTGTCATGATGAGAATTCCCAGAGAAGAGATGTTTAGATTGTCTCATCAAGTCCCTGCACACTTGCTTACAGGTGAAGAAGCTCCAAATGCTCCAAAAGGTTGTTGGGATCTTGATCCAGCAGCAACTCCGGCTGATCTTCTTGAGGTAATAACTGATGTTCAAGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

241

Amino Acids

27.78

Weight (kDa)

5.54

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3444 PF11926 3 - 211 6.4e-80 Domain of unknown function (DUF3444)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 507
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 507
AccB7I CCANNNNNTGG 1 cut(s) 402
AciI CCGC 2 cut(s) 90, 169
AclWI GGATC 8 cut(s) 17, 57, 149, 179, 539, 552, 662, 669
AcsI RAATTY 2 cut(s) 132, 567
AcyI GRCGYC 2 cut(s) 5, 535
AfiI CCNNNNNNNGG 2 cut(s) 362, 402
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 4 cut(s) 189, 461, 520, 716
AluBI AGCT 2 cut(s) 554, 635
AluI AGCT 2 cut(s) 554, 635
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 600
Alw44I GTGCAC 1 cut(s) 330
AlwI GGATC 8 cut(s) 17, 57, 149, 179, 539, 552, 662, 669
AoxI GGCC 2 cut(s) 87, 209
ApaLI GTGCAC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 2 cut(s) 132, 567
AspA2I CCTAGG 1 cut(s) 356
AspS9I GGNCC 3 cut(s) 87, 209, 393
AsuHPI GGTGA 3 cut(s) 377, 488, 638
AvaII GGWCC 1 cut(s) 393
AvrII CCTAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 334
BamHI GGATCC 1 cut(s) 544
BanII GRGCYC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 382
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 2 cut(s) 90, 675
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 2 cut(s) 91, 676
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 3 cut(s) 87, 209, 393
BmiI GGNNCC 2 cut(s) 210, 546
BmrI ACTGGG 2 cut(s) 215, 229
BmsI GCATC 1 cut(s) 102
BmuI ACTGGG 2 cut(s) 215, 229
BpiI GAAGAC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 716
BsaBI GATNNNNATC 2 cut(s) 48, 666
BsaHI GRCGYC 2 cut(s) 5, 535
BsaJI CCNNGG 2 cut(s) 116, 356
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 402
Bse1I ACTGG 3 cut(s) 210, 224, 407
Bse8I GATNNNNATC 2 cut(s) 48, 666
BseDI CCNNGG 2 cut(s) 116, 356
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 2 cut(s) 48, 666
BseLI CCNNNNNNNGG 2 cut(s) 362, 402
BseNI ACTGG 3 cut(s) 210, 224, 407
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 594
BshFI GGCC 2 cut(s) 89, 211
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 419, 683
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 2 cut(s) 362, 402
BsmAI GTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 590
BsmI GAATGC 2 cut(s) 284, 412
BsnI GGCC 2 cut(s) 89, 211
Bsp1286I GDGCHC 2 cut(s) 334, 379
Bsp143I GATC 8 cut(s) 22, 49, 154, 171, 544, 661, 667, 688
BspACI CCGC 2 cut(s) 90, 169
BspANI GGCC 2 cut(s) 89, 211
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 210, 546
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 8 cut(s) 17, 57, 149, 179, 539, 552, 662, 669
BsrI ACTGG 3 cut(s) 210, 224, 407
BssECI CCNNGG 2 cut(s) 116, 356
BssMI GATC 8 cut(s) 22, 49, 154, 171, 544, 661, 667, 688
BssNI GRCGYC 2 cut(s) 5, 535
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 3 cut(s) 343, 490, 526
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 2 cut(s) 5, 535
BstC8I GCNNGC 1 cut(s) 269
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 8 cut(s) 25, 52, 157, 174, 547, 664, 670, 691
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 8 cut(s) 22, 49, 154, 171, 544, 661, 667, 688
BstMWI GCNNNNNNNGC 2 cut(s) 641, 683
BstNSI RCATGY 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 686
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 3 cut(s) 154, 544, 661
BstYI RGATCY 3 cut(s) 154, 544, 661
BsuRI GGCC 2 cut(s) 89, 211
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 348, 531
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 269
CciI TCATGA 1 cut(s) 558
Cfr13I GGNCC 3 cut(s) 87, 209, 393
CseI GACGC 1 cut(s) 524
CviAII CATG 3 cut(s) 246, 272, 559
CviJI RGCY 7 cut(s) 89, 181, 211, 377, 554, 635, 686
CviKI_1 RGCY 7 cut(s) 89, 181, 211, 377, 554, 635, 686
DpnI GATC 8 cut(s) 24, 51, 156, 173, 546, 663, 669, 690
DpnII GATC 8 cut(s) 22, 49, 154, 171, 544, 661, 667, 688
DraI TTTAAA 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 3 cut(s) 249, 275, 562
FaiI YATR 8 cut(s) 96, 126, 247, 273, 350, 352, 441, 560
FaqI GGGAC 1 cut(s) 590
FatI CATG 3 cut(s) 245, 271, 558
Fnu4HI GCNGC 2 cut(s) 90, 675
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 2 cut(s) 90, 675
FspBI CTAG 1 cut(s) 357
GluI GCNGC 2 cut(s) 90, 675
HaeIII GGCC 2 cut(s) 89, 211
HapII CCGG 2 cut(s) 419, 683
HgaI GACGC 1 cut(s) 524
Hin1I GRCGYC 2 cut(s) 5, 535
Hin1II CATG 3 cut(s) 249, 275, 562
HinfI GANTC 1 cut(s) 185
HpaII CCGG 2 cut(s) 419, 683
HphI GGTGA 3 cut(s) 377, 488, 638
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 138, 260
Hpy188III TCNNGA 7 cut(s) 20, 26, 520, 559, 665, 695, 716
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 3 cut(s) 343, 490, 526
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 4 cut(s) 282, 332, 410, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 641, 683
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 2 cut(s) 5, 535
Hsp92II CATG 3 cut(s) 249, 275, 562
Kzo9I GATC 8 cut(s) 22, 49, 154, 171, 544, 661, 667, 688
LmnI GCTCC 2 cut(s) 640, 649
Lsp1109I GCAGC 1 cut(s) 686
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 484, 490
MalI GATC 8 cut(s) 24, 51, 156, 173, 546, 663, 669, 690
MboI GATC 8 cut(s) 22, 49, 154, 171, 544, 661, 667, 688
MboII GAAGA 6 cut(s) 219, 287, 473, 590, 641, 683
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 3 cut(s) 154, 544, 661
MhlI GDGCHC 2 cut(s) 334, 379
MluCI AATT 6 cut(s) 9, 37, 132, 295, 388, 567
MnlI CCTC 6 cut(s) 40, 94, 126, 222, 466, 691
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 2 cut(s) 69, 105
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 2 cut(s) 419, 683
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 2 cut(s) 284, 412
MwoI GCNNNNNNNGC 2 cut(s) 641, 683
NdeII GATC 8 cut(s) 22, 49, 154, 171, 544, 661, 667, 688
NlaIII CATG 3 cut(s) 249, 275, 562
NlaIV GGNNCC 2 cut(s) 210, 546
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 249
PagI TCATGA 1 cut(s) 558
PaqCI CACCTGC 1 cut(s) 507
PciI ACATGT 1 cut(s) 245
PctI GAATGC 2 cut(s) 284, 412
PfeI GAWTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 402
PkrI GCNGC 2 cut(s) 91, 676
PscI ACATGT 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 210, 546
PspPI GGNCC 3 cut(s) 87, 209, 393
PsuI RGATCY 3 cut(s) 154, 544, 661
PvuII CAGCTG 1 cut(s) 554
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 69, 105
SatI GCNGC 2 cut(s) 90, 675
Sau3AI GATC 8 cut(s) 22, 49, 154, 171, 544, 661, 667, 688
Sau96I GGNCC 3 cut(s) 87, 209, 393
SduI GDGCHC 2 cut(s) 334, 379
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 382
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 6 cut(s) 9, 37, 132, 295, 388, 567
SsiI CCGC 2 cut(s) 90, 169
SspMI CTAG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 3 cut(s) 343, 490, 526
TaiI ACGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 52
TasI AATT 6 cut(s) 9, 37, 132, 295, 388, 567
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 69, 105
Tru9I TTAA 2 cut(s) 69, 105
TscAI CASTG 2 cut(s) 348, 531
TseI GCWGC 1 cut(s) 674
TspDTI ATGAA 2 cut(s) 288, 456
TspRI CASTG 2 cut(s) 348, 531
Van91I CCANNNNNTGG 1 cut(s) 402
VneI GTGCAC 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 2 cut(s) 132, 567
XceI RCATGY 1 cut(s) 249
XcmI CCANNNNNNNNNTGG 2 cut(s) 202, 654
XmaJI CCTAGG 1 cut(s) 356
XspI CTAG 1 cut(s) 357
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.