Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001305

Physical Location & Seq

Genomic Coordinates Forward (+)

53374063 .. 53376433

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAGTGTAATAAAGATGAGGGCATCAGGGCAAAAGAGATTGCAGAGAGGAAGTTCGGCGAAAAGGATCTAATGGGGGCAAAGAAATTTGCATTGAAGGCTCAATCCTTGTATCCAGGGATTGATGGTATTCAGCAACTTCTGGCGACACTTGATGTATATATGTGTGCAGAGAACAAGATAGGTGGGGAAGCTGATTGGTATGGCATAATTGGTGTGGATCCAGAAGCAGATGATGAGACAGTGAAGAAACAGTATAGAAAACTAGCTCTTAGTCTTCACCCTGATAAGAATAAGTTTGTAGGGGCAGATGGAGCATTCAACCTACTTAAGGAGGCATGGGATTTGTTGTCTGATAAAACTAAGAGAGTAGCATATGACAGGAGGAGGAATGTTTTTTGTGCACCAAAAAAGGTAGTACACCAGAAAGTTTCAACTGCGCAAGGTTCACATGGGGCCAATGGTTCTGCACACCAGAAAGTTTCAACTGCAGGTCAGGGTTCGCATGGGGTCACTGGGACAACAACAAAAGGTAGAGCATCCAATGCAAAGGCTCAGACAGCTACCAAACGGGCAGCTCCCTCTTCCGCTCCTGCTTCTGTCGAACCAATACCCAAAAGCTTTTGGAGCGAGTGTCCAAAATGCAGGATGCGATTCGAGTATTCAGGACAGTATCTCAGGTGTAATATTTTTTGCCCGAATTGTAATAAACTATTTCAGGCCGTAGAGATAGTTCCACCAGCCATATGTGGTTCAAAGTCAACCACCCCATTTTATACAGGAAGGATTACTCCAGCCTCTGAAAATGTTGGAGAGACAGGTTTTATCAGTCATGTGTCACTTACGGAAAAGAGTGTAACGTGGGTTCCATTTTCAAGAGCTGCTGGTGCTTCTCAAGCTGCCAAAGCTGCAAGGGTAGACCTGCAGGGATCTGCCAGAGCTGCTCGCCCTTCTAAACCTGCCAAAGCCTCAAATGAGGAAAAGCGAGCATCTAAGAAAGGGAGGAAATGCAATATAGATGAGGAGACTCTAGCAAGAGCTAGAGAGAGTTTCACTCGGGATCTGAATGACGATGAAAGAAAGAAGAGGTTCGATGCCAGAAGAAAGAAGGACTTTGATGCCAGCGGAAGGAGGGATAATGATATCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

383

Amino Acids

42.0

Weight (kDa)

9.54

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	66 - 127	2.4e-20	DnaJ domain
Zn_ribbon_20	PF23551	208 - 242	5.5e-08	Zinc beta-ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380
fragaria_vesca	FvH4_4g23600 FvH4_4g23600 FvH4_4g23600 FvH4_6g05390 FvH4_6g05390
malus_domestica	MD13G1120800.v1.1 MD16G1120800.v1.1
prunus_persica	Prupe.1G224400_v2.0.a1
pyrus_communis	pycom16g10320
rosa_chinensis	RchiOBHm_Chr4g0430021 RchiOBHm_Chr4g0430031 RchiOBHm_Chr7g0212821 RchiOBHm_Chr7g0212831
rosa_laevigata	RLG00000002867 RLG00000007011 RLG00000007012
rosa_multiflora	Rmu_co8191322.1_g000001 Rmu_sc0000394.1_g000043 Rmu_sc0000394.1_g000047 Rmu_sc0013698.1_g000012 Rmu_ssc0000150.1_g000033 Rmu_ssc0000150.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246530 Rroxscaffold_5G00371840 Rroxscaffold_5G00371850
rosa_rugosa	Rorug04G0239800 Rorug04G0239800 Rorug07G0136800
rosa_samantha	Rh4AG296700 Rh4AG296800 Rh4BG303000 Rh4BG303100 Rh4CG318500 Rh4CG318600 Rh4DG300300 Rh4DG300400 Rh7AG268400 Rh7BG263900 Rh7BG264000 Rh7CG287400 Rh7DG276500
rosa_wichuraiana	Rw4G025700 Rw4G025720 Rw7G023190 Rw7G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	441
Acc36I	ACCTGC	3 cut(s)	482, 930, 967
AccBSI	CCGCTC	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	918
AciI	CCGC	2 cut(s)	588, 1125
AclWI	GGATC	5 cut(s)	75, 215, 228, 937, 1068
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	331, 1128
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	6 cut(s)	97, 322, 435, 486, 756, 876
AjnI	CCWGG	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	3 cut(s)	233, 809, 1019
Alw44I	GTGCAC	1 cut(s)	402
AlwI	GGATC	5 cut(s)	75, 215, 228, 937, 1068
AlwNI	CAGNNNCTG	1 cut(s)	800
Ama87I	CYCGRG	1 cut(s)	1056
AoxI	GGCC	2 cut(s)	456, 720
ApaLI	GTGCAC	1 cut(s)	402
ApeKI	GCWGC	5 cut(s)	575, 881, 899, 908, 941
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	1088
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	1056
BaeGI	GKGCMC	1 cut(s)	406
BamHI	GGATCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	5 cut(s)	587, 868, 886, 895, 928
BccI	CCATC	2 cut(s)	119, 305
BceAI	ACGGC	1 cut(s)	707
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	3 cut(s)	233, 809, 1019
BfaI	CTAG	3 cut(s)	266, 1031, 1041
BfmI	CTRYAG	3 cut(s)	489, 923, 1148
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	3 cut(s)	482, 930, 967
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	5 cut(s)	576, 882, 900, 909, 942
BlsI	GCNGC	5 cut(s)	577, 883, 901, 910, 943
Bme1390I	CCNGG	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	1056
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	3 cut(s)	222, 457, 867
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	6 cut(s)	33, 548, 639, 998, 1084, 1108
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	1039, 1071
BpmI	CTGGAG	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	879
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 1128
Bse1I	ACTGG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	539, 654
BseLI	CCNNNNNNNGG	2 cut(s)	331, 1128
BseMII	CTCAG	2 cut(s)	569, 691
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	2 cut(s)	400, 1037
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	5 cut(s)	587, 868, 886, 895, 928
BsgI	GTGCAG	2 cut(s)	189, 453
BshFI	GGCC	2 cut(s)	458, 722
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	1056
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	331, 1128
BsmAI	GTCTC	3 cut(s)	233, 809, 1019
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	458, 722
BsoBI	CYCGRG	1 cut(s)	1056
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	4 cut(s)	67, 220, 929, 1060
BspACI	CCGC	2 cut(s)	588, 1125
BspANI	GGCC	2 cut(s)	458, 722
BspCNI	CTCAG	2 cut(s)	568, 690
BspLI	GGNNCC	3 cut(s)	222, 457, 867
BspMAI	CTGCAG	2 cut(s)	493, 927
BspMI	ACCTGC	3 cut(s)	482, 930, 967
BspPI	GGATC	5 cut(s)	75, 215, 228, 937, 1068
BspTI	CTTAAG	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	4 cut(s)	67, 220, 929, 1060
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	244, 255, 672
Bst6I	CTCTTC	2 cut(s)	589, 1079
BstAFI	CTTAAG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	946, 987, 1123
BstDEI	CTNAG	5 cut(s)	272, 363, 555, 677, 993
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	539, 654
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	4 cut(s)	70, 223, 932, 1063
BstMAI	GTCTC	3 cut(s)	233, 809, 1019
BstMBI	GATC	4 cut(s)	67, 220, 929, 1060
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	3 cut(s)	489, 923, 1148
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	5 cut(s)	587, 868, 886, 895, 928
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	4 cut(s)	67, 220, 929, 1060
BstYI	RGATCY	4 cut(s)	67, 220, 929, 1060
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	458, 722
BtsCI	GGATG	2 cut(s)	539, 654
BtsIMutI	CAGTG	2 cut(s)	249, 513
BveI	ACCTGC	3 cut(s)	482, 930, 967
Cac8I	GCNNGC	3 cut(s)	946, 987, 1123
CaiI	CAGNNNCTG	1 cut(s)	800
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	419
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	4 cut(s)	339, 452, 506, 833
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	5 cut(s)	272, 363, 555, 677, 993
DpnI	GATC	4 cut(s)	69, 222, 931, 1062
DpnII	GATC	4 cut(s)	67, 220, 929, 1060
Eam1104I	CTCTTC	2 cut(s)	589, 1079
EarI	CTCTTC	2 cut(s)	589, 1079
Eco32I	GATATC	1 cut(s)	1144
Eco88I	CYCGRG	1 cut(s)	1056
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	1144
FaeI	CATG	4 cut(s)	342, 455, 509, 836
FalI	AAGNNNNNCTT	2 cut(s)	1097, 1129
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	4 cut(s)	338, 451, 505, 832
FauNDI	CATATG	2 cut(s)	376, 746
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	5 cut(s)	576, 882, 900, 909, 942
FokI	GGATG	2 cut(s)	526, 661
Fsp4HI	GCNGC	5 cut(s)	576, 882, 900, 909, 942
FspBI	CTAG	3 cut(s)	266, 1031, 1041
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	5 cut(s)	576, 882, 900, 909, 942
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	458, 722
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	4 cut(s)	342, 455, 509, 836
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	2 cut(s)	654, 1027
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	5 cut(s)	404, 421, 449, 762, 919
Hpy188I	TCNGA	4 cut(s)	355, 558, 802, 1065
Hpy188III	TCNNGA	4 cut(s)	224, 666, 876, 1058
Hpy8I	GTNNAC	5 cut(s)	404, 421, 449, 762, 919
HpyAV	CCTTC	5 cut(s)	91, 777, 960, 1102, 1122
HpyCH4III	ACNGT	3 cut(s)	244, 255, 672
HpyCH4IV	ACGT	1 cut(s)	860
HpyF3I	CTNAG	5 cut(s)	272, 363, 555, 677, 993
HpySE526I	ACGT	1 cut(s)	860
Hsp92II	CATG	4 cut(s)	342, 455, 509, 836
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	4 cut(s)	67, 220, 929, 1060
LmnI	GCTCC	4 cut(s)	314, 583, 595, 627
Lsp1109I	GCAGC	5 cut(s)	587, 868, 886, 895, 928
LweI	GCATC	6 cut(s)	33, 548, 639, 998, 1084, 1108
MaeI	CTAG	3 cut(s)	266, 1031, 1041
MaeII	ACGT	1 cut(s)	860
MaeIII	GTNAC	3 cut(s)	511, 837, 856
MalI	GATC	4 cut(s)	69, 222, 931, 1062
MbiI	CCGCTC	1 cut(s)	590
MboI	GATC	4 cut(s)	67, 220, 929, 1060
MboII	GAAGA	5 cut(s)	259, 269, 576, 1096, 1113
MflI	RGATCY	4 cut(s)	67, 220, 929, 1060
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	3 cut(s)	86, 210, 700
MlyI	GAGTC	1 cut(s)	1021
MmeI	TCCRAC	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	1088
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	1125
MspCI	CTTAAG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	117
NdeI	CATATG	2 cut(s)	376, 746
NdeII	GATC	4 cut(s)	67, 220, 929, 1060
NlaIII	CATG	4 cut(s)	342, 455, 509, 836
NlaIV	GGNNCC	3 cut(s)	222, 457, 867
NmuCI	GTSAC	2 cut(s)	511, 837
NsbI	TGCGCA	1 cut(s)	441
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	1088
PfeI	GAWTC	1 cut(s)	654
PkrI	GCNGC	5 cut(s)	577, 883, 901, 910, 943
PleI	GAGTC	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	1021
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	222, 457, 867
PspPI	GGNCC	1 cut(s)	456
PsrI	GAACNNNNNNTAC	4 cut(s)	717, 749, 849, 881
PstI	CTGCAG	2 cut(s)	493, 927
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	4 cut(s)	67, 220, 929, 1060
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	5 cut(s)	576, 882, 900, 909, 942
Sau3AI	GATC	4 cut(s)	67, 220, 929, 1060
Sau96I	GGNCC	1 cut(s)	456
SbfI	CCTGCAGG	1 cut(s)	927
SchI	GAGTC	1 cut(s)	1021
ScrFI	CCNGG	1 cut(s)	117
SdaI	CCTGCAGG	1 cut(s)	927
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	6 cut(s)	33, 548, 639, 998, 1084, 1108
SfcI	CTRYAG	3 cut(s)	489, 923, 1148
SmlI	CTYRAG	2 cut(s)	329, 894
SmoI	CTYRAG	2 cut(s)	329, 894
Sse8387I	CCTGCAGG	1 cut(s)	927
Sse9I	AATT	3 cut(s)	86, 210, 700
SsiI	CCGC	2 cut(s)	588, 1125
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	3 cut(s)	266, 1031, 1041
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	244, 255, 672
TaiI	ACGT	1 cut(s)	863
TaqI	TCGA	3 cut(s)	603, 657, 1092
TasI	AATT	3 cut(s)	86, 210, 700
TatI	WGTACW	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	2 cut(s)	249, 520
TseFI	GTSAC	2 cut(s)	511, 837
TseI	GCWGC	5 cut(s)	575, 881, 899, 908, 941
Tsp45I	GTSAC	2 cut(s)	511, 837
TspDTI	ATGAA	1 cut(s)	1089
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	2 cut(s)	249, 520
Vha464I	CTTAAG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	918
XmnI	GAANNNNTTC	1 cut(s)	1088
XspI	CTAG	3 cut(s)	266, 1031, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.